Job Description P0A011 Confidence 96.06% Date Tue Jul 17 17:05:03 BST 2012 Rank 92 Aligned Residues 158 % Identity 15% Template c1djnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:trimethylamine dehydrogenase; PDBTitle: structural and biochemical characterization of recombinant wild type2 trimethylamine dehydrogenase from methylophilus methylotrophus (sp.3 w3a1) Resolution 2.20 Å

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		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.															.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Query Sequence		S	A	K	R	L	K	E	Q	G	A	N	A	V	K	F	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	Y	D	V	D	D	A	E	E	I	N	I	Q	K	K	A	Y	I	E	R	I	G	S	E	C	V	A	E	.	.	.	D	I	P	F	F	L	E	V	L	T	Y	D	D	N	I	P	D	N
Query Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation
Template Sequence		A	A	K	R	S	R	D	A	G	F	D	I	V	Y	V	Y	G	A	H	S	Y	L	P	L	Q	F	L	N	P	Y	Y	N	K	R	T	D	K	Y	G	G	S	L	E	N	R	A	R	F	W	L	E	T	L	E	K	V	K	H	A	V	G	S	D	C	A	I	A	T	R	F	G	V	D	T	V	Y	G	P	G	Q
Template Known Secondary structure									T	T		S								T	T									T	T	T					S	T	T	S	S	S																				T	T	T	S											S	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	V	E	F	A	K	V	K	P	R	K	V	N	E	A	M	K	L	F	S	E	P	R	F	N	V	D	V	L	K	V	E	V	P	V	N	M	K	Y	V	E	G	F	A	E	G	E	V	V	Y	T	K	E	E	A	A	Q	H	F	K	D	Q	D	A	A	T	H	L	P	Y	I	Y	L	S	A	G	V	S	A
Query Conservation
Alig confidence				.	.	.	.	.	.	.													.	.										.
Template Conservation				.	.	.	.	.	.	.													.	.										.
Template Sequence		I	E	.	.	.	.	.	.	.	A	E	V	D	G	Q	K	F	V	E	M	A	.	.	D	S	L	V	D	M	W	D	I	.	T	I	G	D	I	A	E	W	G	E	D	A	G	P	S	R	F	Y	Q	Q	G	H	T	I	P	W	V	K	L	V	K	Q	V	S	K	K	P	V	L	G	V	G	R	Y	T	D	P
Template Known Secondary structure				.	.	.	.	.	.	.	T	T	T										.	.	T	T	T		S					.			S		S	T	T	G	G	G	T	S			T	T	T			T	T	T	T									T	T		S	S						S
Template Predicted Secondary structure				.	.	.	.	.	.	.													.	.										.
Template SS confidence
		234	.								.	.	.	.	240	.	.	.	.	.	.	.			.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	F	Q	E	T	L	K	F	A	H	E	A	G	A	K	F	N	G	V	L	C	G	R	A	T	W	S	G	A
Query Conservation
Alig confidence										.	.	.						.	.
Template Conservation										.	.	.						.	.
Template Sequence		E	K	M	I	E	I	V	T	.	.	.	K	G	Y	A	D	.	.	I	I	G	C	A	R	P	S	I	A	D	P
Template Known Secondary structure										.	.	.	T	T	S		S	.	.	B				S							T
Template Predicted Secondary structure										.	.	.						.	.
Template SS confidence
		304	.	.	.	.	.	310	.				.	.	.	.	.			.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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