Job Description P48940 Confidence 2.35% Date Tue Jul 17 17:05:10 BST 2012 Rank 67 Aligned Residues 116 % Identity 15% Template c3mv2A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of a-cop in complex with e-cop Resolution 2.90 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.			.	.	.	.	.	.	.	.	70						.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																			.	.										.	.	.	.	.																										.	.	.	.	.	.
Query SS confidence																																			.	.										.	.	.	.	.																										.	.	.	.	.	.
Query Sequence		K	I	M	L	D	G	K	R	G	T	A	Q	R	I	L	Y	S	A	F	D	L	V	E	Q	R	S	G	R	D	A	L	E	V	.	.	F	E	E	A	I	N	N	I	M	.	.	.	.	.	P	V	L	E	V	K	A	R	R	V	G	G	S	N	Y	Q	V	P	V	E	V	R	P	E	R	.	.	.	.	.	.
Query Conservation																																			.	.										.	.	.	.	.																										.	.	.	.	.	.
Alig confidence																																			.	.										.	.	.	.	.														.	.	.	.	.	.	.	.					.	.	.	.	.	.
Template Conservation																																																																.	.	.	.	.	.	.	.
Template Sequence		K	N	F	K	L	N	K	P	D	I	A	I	E	C	F	R	E	A	I	Y	R	I	T	L	L	M	V	D	D	A	E	D	E	K	L	A	H	K	I	L	E	T	A	R	E	Y	I	L	G	L	S	I	E	L	E	R	R	S	L	K	E	G	.	.	.	.	.	.	.	.	N	T	V	R	M	L	E	L	A	A
Template Known Secondary structure						T	T																		T			B		S	S																												T			T	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																.	.	.	.	.	.	.	.
Template SS confidence
		999	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060									.	.	.	.	.	.	.	.	.	1070
												96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	R	T	T	L	G	L	R	W	L	V	N	Y	A	R	L	R	G	E	K	T	M	E	D	R	L	A	N	E	I	L	D	A	A	N	N	T	G	G	A	V	K	K	R	E	D	T	H	K	M	A	E	A	N	K	A	F	A	H
Query Conservation		.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation																																															.
Template Sequence		Y	F	T	K	A	K	L	S	P	I	H	R	T	N	A	L	Q	V	A	M	S	Q	H	F	K	H	K	N	F	L	Q	A	S	Y	F	A	G	E	F	L	K	I	I	S	S	.	G	P	R	A	E	Q	A	R	K	I	K	N	K	A	D	S	M	A	S	D	A	I
Template Known Secondary structure			G	G	G	S																					T	T														T	T			S	.	S															T	S				S	S
Template Predicted Secondary structure																																															.
Template SS confidence
		1071	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.		.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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