Job Description P48940 Confidence 100.00% Date Tue Jul 17 17:05:10 BST 2012 Rank 11 Aligned Residues 130 % Identity 28% Template c2zkqg_ PDB info PDB header:ribosomal protein/rna Chain: G: PDB Molecule:rna helix; PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map Resolution 8.70 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		N	S	K	L	V	T	K	L	I	N	K	I	M	L	D	.	.	.	.	G	K	R	G	T	A	Q	R	I	L	Y	S	A	F	D	L	V	E	Q	R	S	G	R	D	A	L	E	V	F	E	E	A	I	N	N	I	M	P	V	L	E	V	K	A	R	R	V	G	G	S	N	Y	Q	V	P	V	E	V	R	P	E
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.																																																										.
Template Conservation																																																																														.
Template Sequence		Q	C	P	I	V	E	R	L	T	N	S	M	M	M	H	G	R	N	N	G	K	K	L	M	T	V	R	I	V	K	H	A	F	E	I	I	H	L	L	T	G	E	N	P	L	Q	V	L	V	N	A	I	I	N	S	G	P	R	E	D	S	T	R	I	G	R	A	G	T	V	R	R	Q	A	V	D	.	S	P	L
Template Known Secondary structure																			T	T																							S														S		S									T	T									.
Template Predicted Secondary structure																																																																														.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110				.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence		R	R	T	T	L	G	L	R	W	L	V	N	Y	A	R	L	.	.	.	R	G	E	K	T	M	E	D	R	L	A	N	E	I	L	D	A	A	N	N	T	G	G	A	V	K	K	R	E	D	T	H	K	M	A	E	A	N	K
Query Conservation																		.	.	.
Alig confidence																		.	.	.
Template Conservation
Template Sequence		R	R	V	N	Q	A	I	W	L	L	C	T	G	A	R	E	A	A	F	R	N	I	K	T	I	A	E	C	L	A	D	E	L	I	A	A	K	G	S	S	S	Y	A	I	K	K	K	D	E	L	E	R	V	A	K	S	N	R
Template Known Secondary structure																						S	S	S													T	T
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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