Job Description P48940 Confidence 100.00% Date Tue Jul 17 17:05:10 BST 2012 Rank 9 Aligned Residues 141 % Identity 27% Template c1s1hG_ PDB info PDB header:ribosome Chain: G: PDB Molecule:40s ribosomal protein s5; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. Resolution 11.70 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.					.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																									.	.	.	.
Query SS confidence																									.	.	.	.
Query Sequence		K	R	D	V	L	P	D	P	I	H	N	S	K	L	V	T	K	L	I	N	K	I	M	.	.	.	.	L	D	G	K	R	G	T	A	Q	R	I	L	Y	S	A	F	D	L	V	E	Q	R	S	G	R	D	A	L	E	V	F	E	E	A	I	N	N	I	M	P	V	L	E	V	K	A	R	R	V	G	G	S	N
Query Conservation																									.	.	.	.
Alig confidence																									.	.	.	.
Template Conservation
Template Sequence		R	Y	A	N	K	R	F	R	K	A	Q	C	P	I	I	E	R	L	T	N	S	L	M	M	N	G	R	N	N	G	K	K	L	K	A	V	R	I	I	K	H	T	L	D	I	I	N	V	L	T	D	Q	N	P	I	Q	V	V	V	D	A	I	T	N	T	G	P	R	E	D	T	T	R	V	G	G	G	G	A	A
Template Known Secondary structure				S									S	S	S															T	T																				S	S	S																S									S	S	S
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110				.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.																								.	.
Query SS confidence																												.	.	.																								.	.
Query Sequence		Y	Q	V	P	V	E	V	R	P	E	R	R	T	T	L	G	L	R	W	L	V	N	Y	A	R	L	.	.	.	R	G	E	K	T	M	E	D	R	L	A	N	E	I	L	D	A	A	N	N	T	G	G	.	.	A	V	K	K	R	E	D	T	H	K	M	A	E	A	N	K
Query Conservation																												.	.	.																								.	.
Alig confidence																												.	.	.																								.	.
Template Conservation
Template Sequence		R	R	Q	A	V	D	V	S	P	L	R	R	V	N	Q	A	I	A	L	L	T	I	G	A	R	E	A	A	F	R	N	I	K	T	I	A	E	T	L	A	E	E	L	I	N	A	A	K	G	S	S	T	S	Y	A	I	K	K	K	D	E	L	E	R	V	A	K	S	N	R
Template Known Secondary structure																													S				S	S	S	S												S	S	T	T			S													T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions