Job Description P14738 Confidence 99.87% Date Tue Jul 17 17:05:09 BST 2012 Rank 2 Aligned Residues 289 % Identity 20% Template c3at0A_ PDB info PDB header:cell adhesion/blood clotting Chain: A: PDB Molecule:clumping factor b; PDBTitle: structural and biochemical characterization of clfb:ligand2 interactions Resolution 2.50 Å

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		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.								.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.
Query Sequence		G	T	D	V	T	S	K	V	T	V	E	I	G	S	I	E	G	H	N	N	T	N	K	V	E	P	H	A	G	Q	R	A	V	L	K	Y	K	L	K	F	E	N	G	L	H	Q	G	D	Y	F	D	F	T	L	S	N	N	V	N	T	H	G	V	S	T	A	R	K	.	.	.	.	.	.	.	V	P	E	I	K
Query Conservation																																																																						.	.	.	.	.	.	.
Alig confidence																				.	.	.	.																																															.	.	.	.	.	.	.
Template Conservation																				.	.	.	.
Template Sequence		G	T	N	V	N	D	K	V	T	A	S	N	F	K	L	E	K	T	.	.	.	.	T	F	D	P	N	Q	S	G	N	T	F	M	A	A	N	F	T	V	T	D	K	V	K	S	G	D	Y	F	T	A	K	L	P	D	S	L	T	G	N	G	D	V	D	Y	S	N	S	N	N	T	M	P	I	A	D	I	K	S
Template Known Secondary structure				B		G	G	G									S		S	.	.	.	.				G	G	G	T													S				T	T									T	T			S	S	T	T	B			T	T	T	T	T
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.					230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340					.
Predicted Secondary structure														.																																																															.	.	.	.
Query SS confidence														.																																																															.	.	.	.
Query Sequence		N	G	S	V	V	M	A	T	G	E	V	L	.	E	G	G	K	I	R	Y	T	F	T	N	D	I	E	D	K	V	D	V	T	A	E	L	E	I	N	L	F	I	D	P	K	T	V	Q	T	N	G	N	Q	T	I	T	S	T	L	N	E	E	Q	T	S	K	E	L	D	V	K	Y	K	D	G	.	.	.	.	I
Query Conservation														.																																																															.	.	.	.
Alig confidence														.																																																															.	.	.	.
Template Conservation
Template Sequence		T	N	G	D	V	V	A	K	A	T	Y	D	I	L	T	K	T	Y	T	F	V	F	T	D	Y	V	N	N	K	E	N	I	N	G	Q	F	S	L	P	L	F	T	D	R	A	K	A	P	K	S	G	T	Y	D	A	N	I	N	I	A	D	E	M	F	N	N	K	I	T	Y	N	Y	S	S	P	I	A	G	I	D
Template Known Secondary structure		T	T	S	S									T	T	T	T								G	G	G	G	G		S	S													T	T	T	S		S	S										S	S														S			B		S
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.			.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.							390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																						.	.																													.	.	.	.	.	.
Query SS confidence																						.	.																													.	.	.	.	.	.
Query Sequence		G	N	Y	Y	A	N	L	N	G	S	I	E	T	F	N	K	A	N	N	R	.	.	F	S	H	V	A	F	I	K	P	N	N	G	K	T	T	S	V	T	V	T	G	T	L	M	K	G	S	N	.	.	.	.	.	.	Q	N	G	N	Q	P	K	V	R	I	F	E	Y	L	G	N	N	E	D	I	A	K	S	V
Query Conservation																						.	.																													.	.	.	.	.	.
Alig confidence																						.	.																													.	.	.	.	.	.													.
Template Conservation																																																																						.
Template Sequence		K	P	N	G	A	N	I	S	S	Q	I	I	G	V	D	T	A	S	G	Q	N	T	Y	K	Q	T	V	F	V	N	P	K	Q	R	V	L	G	N	T	W	V	Y	I	K	G	Y	Q	D	K	I	E	E	S	S	G	K	V	S	A	T	D	T	K	L	R	I	F	E	.	V	N	D	T	S	K	L	S	E	S	Y
Template Known Secondary structure		S	T	T			B											S	S	S	S										S	T	T													S	S	S	S		G	G	G						S	T	T	T								.		S		G	G	G			S	S
Template Predicted Secondary structure																																																																						.
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.		.	.	.	.	440	.	.	.	.	.	.
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	N	T	T	D	T	S	K	F	K	E	V	T	S	N	M	S	G	N	L	N	L	Q	N	N	G	S	Y	S	L	N	I	E	N	L	D	K	T	Y	V	V	H	Y	D	G	E	Y	L	N	G	T	D	E	V	D	F	R	T	Q	M	V	G	H	P	E	Q	L	Y	K	Y	Y	Y	D	R
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		Y	A	D	P	N	D	.	S	N	L	K	E	V	T	D	Q	F	K	N	R	I	Y	Y	E	H	P	N	V	A	S	I	K	F	G	D	I	T	K	T	Y	V	V	L	V	E	G	H	Y	D	N	T	G	K	N	L	K	T	Q	V	I	Q	E	N	V	D	P	V	T	N	R	D	Y	S	I	F
Template Known Secondary structure					T	T		.	T	T					G	G	G	G	T	T	S						T	T											S												S	S															T	T	T	S
Template Predicted Secondary structure								.
Template SS confidence
		447	.	.	450	.	.		.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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