Job Description P14738 Confidence 99.91% Date Tue Jul 17 17:05:09 BST 2012 Rank 1 Aligned Residues 326 % Identity 23% Template c1n67A_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:clumping factor; PDBTitle: clumping factor a from staphylococcus aureus Resolution 1.90 Å

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		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	D	V	T	S	K	V	T	V	E	I	G	S	I	E	G	H	N	N	T	N	K	V	E	P	H	A	G	Q	R	A	V	L	K	Y	K	L	K	F	E	N	G	L	H	Q	G	D	Y	F	D	F	T	L	S	N	N	V	N	T	H	G	V	S	T	A	R	K	V	P	E	I	K	N	G	S	V	V	M	A
Query Conservation
Alig confidence																				.	.	.
Template Conservation																				.	.	.
Template Sequence		G	T	D	I	T	N	Q	L	T	N	V	T	V	G	I	D	S	G	.	.	.	T	T	V	Y	P	H	Q	A	G	Y	V	K	L	N	Y	G	F	S	V	P	N	S	A	V	K	G	D	T	F	K	I	T	V	P	K	E	L	N	L	N	G	V	T	S	T	A	K	V	P	P	I	M	A	G	D	Q	V	L	A
Template Known Secondary structure				B		G	G	G												.	.	.	S				T	T	B	T													T	T			T	T						B			T	T				S	S	S	S	T	T									T	T
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.				.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	E	V	L	E	G	G	K	I	R	Y	T	F	T	N	D	I	E	D	K	V	D	V	T	A	E	L	E	I	N	L	F	I	D	P	K	T	V	Q	T	N	G	N	Q	T	I	T	S	T	L	N	E	E	Q	T	S	K	E	L	D	V	K	Y	K	D	G	I	G	N	Y	Y	A	N	L	N	G	S	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	G	V	I	D	S	D	G	N	V	I	Y	T	F	T	D	Y	V	N	T	K	D	D	V	K	A	T	L	T	M	P	A	Y	I	D	P	E	N	V	K	K	T	G	N	V	T	L	A	T	G	I	G	S	T	T	A	N	K	T	V	L	V	D	Y	E	K	Y	G	K	F	Y	N	L	S	I	K	G	T	I	D
Template Known Secondary structure							T	T	S								T							S													T	T	T			S	S										T	T																		T	T							B
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	N	K	A	N	N	R	F	S	H	V	A	F	I	K	P	N	N	G	K	T	T	S	V	T	V	T	G	T	L	M	K	G	S	N	Q	N	G	N	Q	P	K	V	R	I	F	E	Y	L	G	N	N	E	D	I	A	K	S	V	Y	A	N	T	T	D	T	S	K	F	K	E	V	T	S	N	M	S	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	I	D	K	T	N	N	T	Y	R	Q	T	I	Y	V	N	P	S	G	D	N	V	I	A	P	V	L	T	G	N	L	K	P	N	T	D	S	N	A	L	I	D	Q	Q	N	T	S	I	K	V	Y	K	V	D	N	A	A	D	L	S	E	S	Y	F	V	N	P	E	N	F	E	D	V	T	N	S	V	N	I	T
Template Known Secondary structure					T	T	T	T										T	T															T	T	S							S	T	T	T									S		G	G	G	S		T	T					G	G	G					G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
		434	.	.	.	.	.	440	.	.	.	.	.	.	.					.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.		.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.																				.
Query SS confidence																.	.	.	.																				.
Query Sequence		L	N	L	Q	N	N	G	S	Y	S	L	N	I	E	.	.	.	.	N	L	D	K	T	Y	V	V	H	Y	D	G	E	Y	L	N	G	T	D	.	E	V	D	F	R	T	Q	M	V	G	H	P	E	Q	L	Y	K	Y	Y	Y	D	R	G	Y	T	L	T	W	D	N	G	L	V	L	Y	S	N	K	A	N	G	N
Query Conservation																.	.	.	.																				.
Alig confidence				.	.											.	.	.	.																				.																	.	.	.	.	.	.
Template Conservation				.	.																																																			.	.	.	.	.	.
Template Sequence		F	P	.	.	N	P	N	Q	Y	K	V	E	F	N	T	P	D	D	Q	I	T	T	P	Y	I	V	V	V	N	G	H	I	D	P	N	S	K	G	D	L	A	L	R	S	T	L	Y	G	Y	N	S	N	I	I	.	.	.	.	.	.	W	R	S	M	S	W	D	N	E	V	A	F	N	N	G	S	G	S	G	D
Template Known Secondary structure				.	.		T	T									T	T	S				S												T	T			S													T	T			.	.	.	.	.	.												T	T		S	S		S		S
Template Predicted Secondary structure				.	.																																																			.	.	.	.	.	.
Template SS confidence
		466	.			.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.							.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
		509	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	N	G	P	I	I	Q	N	N	K	F	E	Y	K	E	D	T	I	K	E	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	D	K	P	V	V	P	E	Q	P	D	E	P	G	E	I	E	P	I	P	E
Template Known Secondary structure		S											S	S	T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		538	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions