Job Description A2AAY5 Confidence 99.31% Date Tue Jul 30 13:00:07 BST 2013 Rank 199 Aligned Residues 117 % Identity 22% Template c2i4kA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:sorting nexin-1; PDBTitle: solution structure of the px domain of sorting nexin 1 Resolution UNK

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.					.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																.														.	.	.	.
Query SS confidence																.														.	.	.	.
Query Sequence		V	E	V	K	V	L	D	V	Q	K	R	R	V	P	.	N	K	H	Y	V	Y	I	I	R	V	T	W	S	.	.	.	.	S	G	A	T	E	A	I	Y	R	R	Y	S	K	F	F	D	L	Q	M	Q	M	L	D	K	F	P	M	E
Query Conservation																.														.	.	.	.
Alig confidence																.														.	.	.	.
Template Conservation
Template Sequence		L	T	V	G	I	T	D	P	E	K	I	G	D	G	M	N	A	Y	V	A	Y	K	V	T	T	Q	T	S	L	P	L	F	R	S	K	Q	F	A	V	K	R	R	F	S	D	F	L	G	L	Y	E	K	L	S	E	K	H	S	Q	N
Template Known Secondary structure						B					B				S	S				B				B						S	S	S	S		S	S				B																	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
		63	.	.	.			.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		G	G	Q	K	.	.	D	P	K	Q	R	I	I	P	F	L	P	G	K	I	L	F	R	R	S	H	I	R	D	V	A	V	K	R	L	I	P	I	D	E	Y	C	K	A	L	I	Q	L	P	P	Y	I	S	Q	C	D	E	V	L	Q
Query Conservation						.	.
Alig confidence						.	.																																										.
Template Conservation																																																	.
Template Sequence		G	F	I	V	P	P	P	P	E	K	S	L	I	G	M	T	K	V	K	V	G	K	E	D	S	S	S	A	E	F	L	E	K	R	R	A	A	L	E	R	Y	L	Q	R	I	V	N	.	H	P	T	M	L	Q	D	P	D	V	R	E
Template Known Secondary structure		S					S	S	S	S			S	S	S	S	S	S					S				S	S	T	T																			.							S					T
Template Predicted Secondary structure																																																	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.
		121	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	F	E	T	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	E	K	E
Template Known Secondary structure		T	T	T
Template Predicted Secondary structure
Template SS confidence
		123	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D