Job Description A2AAY5 Confidence 100.00% Date Tue Jul 30 13:00:07 BST 2013 Rank 1 Aligned Residues 248 % Identity 21% Template c2dybA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:neutrophil cytosol factor 4; PDBTitle: the crystal structure of human p40(phox) Resolution 3.15 Å Model Dimensions (Å) X:46.613 Y:86.893 Z:46.419

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	R	R	S	I	V	E	V	K	V	L	D	V	Q	K	R	R	V	P	N	K	H	Y	V	Y	I	I	R	V	T	W	S	S	G	A	T	E	A	I	Y	R	R	Y	S	K	F	F	D	L	Q	M	Q	M	L	D	K	F	P	M	E
Query Conservation
Alig confidence																																																												.	.
Template Conservation																																																												.	.
Template Sequence		P	D	D	V	A	I	S	A	N	I	A	D	I	E	E	K	R	G	F	T	S	H	F	V	F	V	I	E	V	K	T	K	G	G	S	K	Y	L	I	Y	R	R	Y	R	Q	F	H	A	L	Q	S	K	L	E	E	R	F	G	.	.
Template Known Secondary structure			T	T	S														S	S	S												T	T	S																							T		.	.
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	Q	K	D	P	K	Q	R	I	I	P	F	L	P	G	K	I	L	F	R	R	S	H	I	R	D	V	A	V	K	R	L	I	P	I	D	E	Y	C	K	A	L	I	Q	L	P	P	Y	I	S	Q	C	D	E	V	L	Q	F	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.														.	.
Template Conservation		.	.	.	.	.	.	.	.	.														.	.
Template Sequence		.	.	.	.	.	.	.	.	.	T	L	P	T	L	P	A	K	V	Y	V	G	V	.	.	K	Q	E	I	A	E	M	R	I	P	A	L	N	A	Y	M	K	S	L	L	S	L	P	V	W	V	L	M	D	E	D	V	R	I	F	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.												S		.	.																						S						T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.														.	.
Template SS confidence
											85	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	R	P	E	D	L	N	P	P	K	E	E	H	I	G	K	K	K	S	G	N	D	P	T	S	V	D	P	M	V	L	E	Q	Y	V	V	V	A	D	Y	Q	K	Q	E	S	S	E	I	S	L	S	V	G	Q	V	V	D	I	I
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.
Template Sequence		Y	Q	S	P	Y	D	S	E	Q	V	P	Q	A	L	R	R	L	R	P	R	R	M	A	.	.	.	.	.	.	.	.	A	P	R	A	E	A	L	F	D	F	T	G	N	S	K	L	E	L	N	F	K	A	G	D	V	I	F	L	L
Template Known Secondary structure		S																	S						.	.	.	.	.	.	.	.							S	S		B			S	S	S	S	B			B		T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.									.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.																												.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	K	N	E	S	G	W	W	F	V	S	T	A	E	E	Q	G	W	V	P	A	T	C	L	E	G	Q	D	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	D	E
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	R	I	N	K	D	W	L	E	G	T	V	R	G	A	T	G	I	F	P	L	S	F	V	K	I	L	K	D	F	P	E	E	D	D	P	T	N	W	L	R	C	Y	Y	Y	E	D	T	I	S	T	I	K	D	I	A	V	E	E	D
Template Known Secondary structure					S	S	S							T	T							G	G	G										T	T													S	S											S
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.				.	.	.	.	.	.	.	270
Predicted Secondary structure																														.	.																				.	.	.
Query SS confidence																														.	.																				.	.	.
Query Sequence		F	S	L	Q	P	E	E	E	E	K	Y	T	V	I	Y	P	Y	T	A	R	D	Q	D	E	M	N	L	E	.	.	R	G	A	V	V	E	V	V	Q	K	N	L	E	G	W	W	K	I	R	.	.	.	Y	Q	G	K	E	G	W	A
Query Conservation																														.	.																				.	.	.
Alig confidence																														.	.																				.	.	.
Template Conservation
Template Sequence		L	S	S	T	P	L	L	K	D	L	L	E	L	T	R	R	E	F	Q	R	E	D	I	A	L	N	Y	R	D	A	E	G	D	L	V	R	L	L	S	D	E	D	V	A	L	M	V	R	Q	A	R	G	L	P	S	Q	K	R	L	F
Template Known Secondary structure		T	T																	T		S									S	S	S							S												T	T	S			B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		271
Predicted Secondary structure
Query SS confidence
Query Sequence		P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		321

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D