Job Description Q9R0C8 Confidence 99.06% Date Wed Jul 10 14:10:18 BST 2013 Rank 280 Aligned Residues 307 % Identity 12% Template c2q13A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:dcc-interacting protein 13 alpha; PDBTitle: crystal structure of bar-ph domain of appl1 Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.				.	.	220	.	.	.	.	.										.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.									.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.									.	.	.	.	.	.	.	.	.
Query Sequence		E	N	D	I	R	S	C	C	L	A	E	I	R	Q	T	E	E	K	Y	T	E	T	L	E	S	I	E	K	Y	.	.	.	F	M	A	P	L	K	R	F	.	.	.	.	.	.	.	.	.	L	T	A	A	E	F	D	S	V	F	I
Query Conservation																															.	.	.									.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	A	T	A	I	S	N	Y	M	N	Q	L	Y	Q	A	M	H	R	I	Y	D	A	Q	N	E	L	S	A	A	T	H	L	T	S	K	L	L	K	E	Y	E	K	Q	R	F	P	L	D	E	V	M	S	S	T	L	Q	Q	F	S	K
Template Known Secondary structure																																								T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	P	D	L	V	K	V	H	R	S	L	M	Q	E	I	H	D	S	I	V	N	K	D	D	Q	N	L	Y	Q	V	F	I	N	Y	K	E	R	L	V	I	Y	G	Q	Y	C	S	G	V	E	S	A	I	S	N	L	D	Y	I	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	I	D	E	L	S	S	C	H	A	V	L	S	T	Q	L	A	D	A	M	M	F	P	I	T	Q	F	K	E	R	D	L	K	E	I	L	T	L	K	E	V	F	Q	I	A	S	N	D	H	D	A	A	I	N	R	Y	S	R	L	S
Template Known Secondary structure																					T										T																												T
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		297	.				.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure				.	.	.																																						.																	.
Query SS confidence				.	.	.																																						.																	.
Query Sequence		K	T	.	.	.	K	E	D	V	K	L	K	L	E	E	C	S	K	R	A	N	N	G	K	F	T	L	R	D	L	L	V	V	P	M	Q	R	V	L	K	Y	H	.	L	L	L	Q	E	L	V	K	H	T	H	D	P	M	E	K	.
Query Conservation				.	.	.																																						.																	.
Alig confidence				.	.	.																																						.																	.
Template Conservation
Template Sequence		K	K	R	E	N	D	K	V	K	Y	E	V	T	E	D	V	Y	T	S	R	K	K	Q	H	Q	T	M	M	H	Y	F	C	A	L	N	T	L	Q	Y	K	K	K	I	A	L	L	E	P	L	L	G	Y	M	Q	A	Q	I	S	F	F
Template Known Secondary structure		S	S	S
Template Predicted Secondary structure
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
														352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	A	N	L	K	L	A	L	D	A	M	K	D	L	A	Q	Y	V	N	E	V	K	R	D	N	E	T	L	R	E	I	K	Q	F	Q	L	S	I	E	N	L	N	Q	P	V	L	L	F	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																													.	.
Template Conservation																																										.	.
Template Sequence		K	M	G	S	E	N	L	N	E	Q	L	E	E	F	L	A	N	I	G	T	S	V	Q	N	V	R	R	E	M	D	S	D	I	E	T	M	Q	Q	T	I	.	.	E	D	L	E	V	A	S	D	P	L	Y	V	P	D	P	D	P	T
Template Known Secondary structure								S																																		.	.								G	G	G	S	S	S	S			T	T
Template Predicted Secondary structure																																										.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.			.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		R	P	Q	G	D	G	E	I	R	I	T	T	L	.	.	D	K	H	T	K	Q	E	R	H	I	F	L	F	D	L	A	V	I	V	C	K	R	K	G	D	N	Y	E	M	K	E	I	I	D	L	Q	Q	Y	K	I	A	N	N	P	T
Query Conservation															.	.
Alig confidence															.	.																												.	.															.	.
Template Conservation																																												.	.															.	.
Template Sequence		K	F	P	V	N	R	N	L	T	R	K	A	G	Y	L	N	A	R	T	W	D	R	Q	F	Y	F	T	Q	G	G	N	L	M	S	Q	A	R	G	D	V	A	G	.	.	G	L	A	M	D	I	D	N	C	S	V	M	A	V	.	.
Template Known Secondary structure		T	S							S																				T	T							S	S		S	S		.	.							T	T							.	.
Template Predicted Secondary structure																																												.	.															.	.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.			.	.	.	.	.	.	.	.	320	.	.	.	.	.
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	D	K	E	N	K	K	W	S	Y	G	F	Y	L	I	H	T	Q	G	Q	N	G	L	E	F	Y	C	K	T	K	D	L	K	K	K	W	L	E	Q	F	E	M	A	L	S	N	I
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	D	C	E	D	R	R	Y	C	F	Q	I	T	S	F	D	G	K	K	S	S	I	L	Q	A	E	S	K	K	D	H	E	E	W	I	C	T	I	N	N	I	S	K	Q	I
Template Known Secondary structure		.	.	.			T	T		S	S							T	T	S		B							S	S																T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D