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Job DescriptionQ9CQP2
Confidence42.73%DateWed Jul 10 14:24:44 BST 2013
Rank16Aligned Residues116
% Identity13%Templatec4b93A_
PDB info PDB header:exocytosisChain: A: PDB Molecule:vesicle-associated membrane protein 7; PDBTitle: complex of vamp7 cytoplasmic domain with 2nd ankyrin repeat2 domain of varp
Resolution2.00 Å
Model Dimensions (Å)X:44.539 Y:33.264 Z:30.636

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60
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Query Sequence  MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY
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Template Sequence  MA. . ILFAVVARGTTILAKHAWCGGN. . . . . . . . . . . . . . FLEVTEQILAKIPSENN. . .
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Query Sequence  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIK. NFFTDVYDLYIKFAMNPFYEPNS
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Template Sequence  . KLTYSHGNYLFHYIC. QDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALP
Template Known Secondary structure  .TT.TTTTS
GGGGGT

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   42.......50...... ...60.........70.........80.........90.........
 
   120.........130.......
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Query Sequence  PIRSSAFDRKVQFLGKKH
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Template Sequence  YAMNSEFSSVLAAQLKHH
Template Known Secondary structure  TTT
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   100.........110.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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