Emaill.a.kelley@imperial.ac.uk
DescriptionQ9CQP2
DateWed Jul 10 14:24:44 BST 2013
Unique Job IDf74afb2e11cfc573

Detailed template information 

#Template Alignment Coverage3D Model Confidence% i.d. Template Information
1d2j3wa1



100.0 100 Fold:Profilin-like
Superfamily:SNARE-like
Family:Sedlin (SEDL)
2c2j3tC_



100.0 11 PDB header:transport
Chain: C: PDB Molecule:trafficking protein particle complex subunit 1;
PDBTitle: the crystal structure of the bet3-trs33-bet5-trs23 complex.
3c3cueM_



100.0 18 PDB header:protein transport
Chain: M: PDB Molecule:transport protein particle 23 kda subunit;
PDBTitle: crystal structure of a trapp subassembly activating the rab ypt1p
4c3pr6A_



100.0 17 PDB header:transport protein
Chain: A: PDB Molecule:trapp-associated protein tca17;
PDBTitle: crystal structure analysis of yeast trapp associate protein tca17
5c2zmvB_



100.0 26 PDB header:transport protein
Chain: B: PDB Molecule:trafficking protein particle complex subunit 4;
PDBTitle: crystal structure of synbindin
6c3cueO_



100.0 19 PDB header:protein transport
Chain: O: PDB Molecule:transport protein particle 18 kda subunit;
PDBTitle: crystal structure of a trapp subassembly activating the rab ypt1p
7c3kyqA_



94.3 8 PDB header:transferase
Chain: A: PDB Molecule:synaptobrevin homolog ykt6;
PDBTitle: lipid-induced conformational switch controls fusion activity of longin2 domain snare ykt6
8d1gw5m2



91.2 13 Fold:Profilin-like
Superfamily:SNARE-like
Family:Clathrin coat assembly domain
9d1ioua_



86.6 7 Fold:Profilin-like
Superfamily:SNARE-like
Family:Synatpobrevin N-terminal domain
10c2hf6A_



84.3 6 PDB header:protein transport
Chain: A: PDB Molecule:coatomer subunit zeta-1;
PDBTitle: solution structure of human zeta-cop
11c2dmwA_



63.7 13 PDB header:membrane protein
Chain: A: PDB Molecule:synaptobrevin-like 1 variant;
PDBTitle: solution structure of the longin domain of synaptobrevin-2 like protein 1
12c2jkrM_



63.4 13 PDB header:endocytosis
Chain: M: PDB Molecule:ap-2 complex subunit mu-1;
PDBTitle: ap2 clathrin adaptor core with dileucine peptide rm(2 phosphos)qikrllse
13c3egdC_



61.7 9 PDB header:protein transport
Chain: C: PDB Molecule:vesicle-trafficking protein sec22b;
PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23a/24a complexed with the snare protein sec22 and bound3 to the transport signal sequence of vesicular stomatitis4 virus glycoprotein
14c2nupC_



61.7 9 PDB header:protein transport
Chain: C: PDB Molecule:vesicle-trafficking protein sec22b;
PDBTitle: crystal structure of the human sec23a/24a heterodimer,2 complexed with the snare protein sec22b
15c1w63P_



47.0 3 PDB header:endocytosis
Chain: P: PDB Molecule:adaptor-related protein complex 1, mu 1 subunit;
PDBTitle: ap1 clathrin adaptor core
16c4b93A_



42.7 13 PDB header:exocytosis
Chain: A: PDB Molecule:vesicle-associated membrane protein 7;
PDBTitle: complex of vamp7 cytoplasmic domain with 2nd ankyrin repeat2 domain of varp
17d1ifqa_



40.3 10 Fold:Profilin-like
Superfamily:SNARE-like
Family:Synatpobrevin N-terminal domain
18c1mp9B_



21.0 11 PDB header:dna binding protein
Chain: B: PDB Molecule:tata-binding protein;
PDBTitle: tbp from a mesothermophilic archaeon, sulfolobus2 acidocaldarius
19d1gw5s_



20.4 11 Fold:Profilin-like
Superfamily:SNARE-like
Family:Clathrin coat assembly domain
20c4b0aA_



18.0 14 PDB header:transcription
Chain: A: PDB Molecule:transcription initiation factor tfiid subunit 1, linker,
PDBTitle: the high-resolution structure of ytbp-ytaf1 identifies2 conserved and competing interaction surfaces in3 transcriptional activation
21c1d3uA_



not modelled 17.7 8 PDB header:gene regulation/dna
Chain: A: PDB Molecule:tata-binding protein;
PDBTitle: tata-binding protein/transcription factor (ii)b/bre+tata-2 box complex from pyrococcus woesei
22c4eiyA_



not modelled 17.5 23 PDB header:membrane protein
Chain: A: PDB Molecule:adenosine receptor a2a/soluble cytochrome b562 chimera;
PDBTitle: crystal structure of the chimeric protein of a2aar-bril in complex2 with zm241385 at 1.8a resolution
23c1yd6A_



not modelled 17.4 13 PDB header:dna binding protein
Chain: A: PDB Molecule:uvrc;
PDBTitle: crystal structure of the giy-yig n-terminal endonuclease2 domain of uvrc from bacillus caldotenax
24c1rm1A_



not modelled 17.1 14 PDB header:transcription/dna
Chain: A: PDB Molecule:tata-box binding protein;
PDBTitle: structure of a yeast tfiia/tbp/tata-box dna complex
25c1ngmM_



not modelled 17.1 14 PDB header:transcription/dna
Chain: M: PDB Molecule:transcription initiation factor tfiid;
PDBTitle: crystal structure of a yeast brf1-tbp-dna ternary complex
26c1w63T_



not modelled 15.2 6 PDB header:endocytosis
Chain: T: PDB Molecule:adapter-related protein complex 1 sigma 1a
PDBTitle: ap1 clathrin adaptor core
27c2z8uQ_



not modelled 13.6 10 PDB header:transcription
Chain: Q: PDB Molecule:tata-box-binding protein;
PDBTitle: methanococcus jannaschii tbp
28d1e0na_



not modelled 13.6 17 Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
29c3eikB_



not modelled 12.9 14 PDB header:transcription
Chain: B: PDB Molecule:tata-box-binding protein;
PDBTitle: double stranded dna binding protein
30c3trjC_



not modelled 11.5 10 PDB header:isomerase
Chain: C: PDB Molecule:phosphoheptose isomerase;
PDBTitle: structure of a phosphoheptose isomerase from francisella tularensis
31c3bcyA_



not modelled 10.9 39 PDB header:unknown function
Chain: A: PDB Molecule:protein yer067w;
PDBTitle: crystal structure of yer067w
32c3emlA_



not modelled 10.6 24 PDB header:membrane protein, receptor
Chain: A: PDB Molecule:human adenosine a2a receptor/t4 lysozyme chimera;
PDBTitle: the 2.6 a crystal structure of a human a2a adenosine receptor bound to2 zm241385.
33c4ax2A_



not modelled 9.5 27 PDB header:toxin
Chain: A: PDB Molecule:rap1b;
PDBTitle: new type vi-secreted toxins and self-resistance proteins in2 serratia marcescens
34d1qnaa2



not modelled 9.2 10 Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
35d2cxha1



not modelled 9.0 22 Fold:Anticodon-binding domain-like
Superfamily:Class II aaRS ABD-related
Family:Brix domain
36c2cxhA_



not modelled 9.0 22 PDB header:rna binding protein
Chain: A: PDB Molecule:probable brix-domain ribosomal biogenesis protein;
PDBTitle: crystal structure of probable ribosomal biogenesis protein from2 aeropyrum pernix k1
37d1cdwa2



not modelled 7.4 10 Fold:TBP-like
Superfamily:TATA-box binding protein-like
Family:TATA-box binding protein (TBP), C-terminal domain
38d1es6a1



not modelled 7.1 29 Fold:EV matrix protein
Superfamily:EV matrix protein
Family:EV matrix protein
39c3tcqA_



not modelled 6.9 29 PDB header:viral protein
Chain: A: PDB Molecule:matrix protein vp40;
PDBTitle: crystal structure of matrix protein vp40 from ebola virus sudan
40d1h2ca_



not modelled 6.9 29 Fold:EV matrix protein
Superfamily:EV matrix protein
Family:EV matrix protein
41c3rzeA_



not modelled 6.8 30 PDB header:hydrolase
Chain: A: PDB Molecule:histamine h1 receptor, lysozyme chimera;
PDBTitle: structure of the human histamine h1 receptor in complex with doxepin
42c1h2dA_



not modelled 6.7 29 PDB header:virus/viral protein
Chain: A: PDB Molecule:matrix protein vp40;
PDBTitle: ebola virus matrix protein vp40 n-terminal domain in2 complex with rna (low-resolution vp40[31-212] variant).
43c2go51_



not modelled 6.5 10 PDB header:translation/rna
Chain: 1: PDB Molecule:signal recognition particle receptor alpha
PDBTitle: structure of signal recognition particle receptor (sr) in2 complex with signal recognition particle (srp) and3 ribosome nascent chain complex
44d1d2zb_



not modelled 5.6 16 Fold:DEATH domain
Superfamily:DEATH domain
Family:DEATH domain, DD
45c1z5sD_



not modelled 5.1 23 PDB header:ligase
Chain: D: PDB Molecule:ran-binding protein 2;
PDBTitle: crystal structure of a complex between ubc9, sumo-1,2 rangap1 and nup358/ranbp2