 |
| Job Description | Q9CQP2 | | Confidence | 15.21% | Date | Wed Jul 10 14:24:44 BST 2013 |
| Rank | 26 | Aligned Residues | 95 |
| % Identity | 6% | Template | c1w63T_ |
| PDB info |
PDB header:endocytosis | Chain: T: PDB Molecule:adapter-related protein complex 1 sigma 1a |
PDBTitle: ap1 clathrin adaptor core
|
| Resolution | 4.0 Å |
|
 |
|   |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
S | F | Y | F | V | I | V | G | H | H | D | N | P | V | F | E | M | E | F | L | P | P | G | K | A | E | S | K | D | D | H | R | H | L | N | Q | F | I | A | H | A | A | L | D | L | V | D | E | N | M | W | L | S | N | N | M | Y | L | K | T |
| Query Conservation |   |
  |   |   |
|   |
|
|   |   |   |   |   |
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|
|   |
|
|   |   |   |   |   |
|   |   |   |   |
|
|   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
| Template Conservation |   |
|   |   |
|   |
|
|
|   |   |
|   |   |
|   |   |
|   |
|   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   | . |   |   |
| Template Sequence |   |
M | R | F | M | L | L | F | S | R | Q | G | K | L | R | L | Q | K | W | Y | L | A | T | S | D | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
E | R | K | K | M | V | R | E | L | M | Q | V | V | L | A | R | K | P | K | M | . |
C | S |
| Template Known Secondary structure |   |
 |  |  |  |  |  |  |
| S | S | S |
|  |  |  |  |  |  | S | S |
|
|
|  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |
| S | S | S | . |
| S |
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . |
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | |
. | . |
|   |
|   |   |
64 | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | |
. | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . |
| Predicted Secondary structure |   |
 |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
V | D | K | F | N | E | W | F | V | S | A | F | V | T | A | G | H | M | R | F | I | M | L | H | D | V | R | Q | E | D | . |
G | I | K | N | F | F | T | D | V | Y | D | L | Y | I | K | F | A | M | N |
| Query Conservation |   |
|   |   |   |   |   |   |   |
|   |   |
|   |
|   |
|
|   |
|
|
|
|   |   |
|   |   |   |   |   | . |   |
|   |   |   |   |   |   |
|   |   |   |
|
|   |   |
|   |
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|   |   |   |   |   |   |   |   | . |
|
|   |   |   |   |   |
|
|   |
|   |
|   |   |   |   |   |
|   |
|   |   |   |
|   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |
| Template Sequence |   |
F | L | E | W | R | D | L | K | V | . |
V | Y | K | R | Y | A | S | L | Y | F | C | C | A | I | E | G | Q | D | N | E | L | I | T | L | E | L | I | H | R | Y | V | E | L | L | D | K | Y | F | G | S |
| Template Known Secondary structure |   |
 |  |  |  | T | T |  |  |  | . |  |  |  |  |  | T | T |  |  |  |  |  |  |  |
| S | S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S |
| Template Predicted Secondary structure |   |
 |  |  |  |
|
|  |  |  | . |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
49 | 50 | . | . | . | . | . | . | . | |
. | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
Phyre2 is part of Genome3D |
|