 |
| Job Description | Q9CQP2 | | Confidence | 17.66% | Date | Wed Jul 10 14:24:44 BST 2013 |
| Rank | 21 | Aligned Residues | 52 |
| % Identity | 8% | Template | c1d3uA_ |
| PDB info |
PDB header:gene regulation/dna | Chain: A: PDB Molecule:tata-binding protein; |
PDBTitle: tata-binding protein/transcription factor (ii)b/bre+tata-2 box complex from pyrococcus woesei
|
| Resolution | 2.40 Å |
|
|   |   |
56 | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
S | N | N | M | Y | L | K | T | V | D | K | F | N | E | W | F | V | S | A | F | V | T | A | G | H | M | R | F | I | M | L | H | D | V | R | Q | E | D | G | I | K | N | F | F | T | D | V | Y | D | L | Y | I | K | F |
| Query Conservation |   |
|   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |
|   |   |
|   |
|   |
|
|   |
|
|
|
|   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|
|   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|
|
|   |
|
|
|
|
|
|
|   |   |   |
|   |   |   |
|   |
|
|   |
|
| . | . |
|
|
|
|
|
|
|
|
|   |   |   |   |   |   |
|   |   |   |
|   |
|   |
|   |   |   |
| Template Sequence |   |
E | P | E | Q | F | P | G | V | I | Y | R | V | K | E | P | K | S | V | I | L | L | F | S | S | G | . |
. |
K | I | V | C | S | G | A | K | S | E | A | D | A | W | E | A | V | R | K | L | L | R | E | L | D | K | Y |
| Template Known Secondary structure |   |
| T | T | T |
| S | S |  |  |  |  |  | T | T | T | T |  |  |  |  |  |
| T | T | S | . | . |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|
| Template Predicted Secondary structure |   |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
| . | . |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | |
|
. | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
Phyre2 is part of Genome3D |
|