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Job DescriptionQ9CQP2
Confidence100.00%DateWed Jul 10 14:24:44 BST 2013
Rank3Aligned Residues133
% Identity18%Templatec3cueM_
PDB info PDB header:protein transportChain: M: PDB Molecule:transport protein particle 23 kda subunit; PDBTitle: crystal structure of a trapp subassembly activating the rab ypt1p
Resolution3.70 Å
Model Dimensions (Å)X:47.299 Y:41.902 Z:36.133

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.......
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Query Sequence  GSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSN. . . . .
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Template Sequence  AIETILVINKSGGLIYQRNFTNDEQKLNSNEYLILAST. LHGVFAIASQLTPKALIPYIP
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   2.......10.........20.........30......... 40.........50.........60
 
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Query Sequence  . . . . . . . . . . . . . . . NMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVR. . . QEDGIKNFF
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Template Sequence  YVGMDDFFKEPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMNLAIQIADNFL
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Query Sequence  TDVYDLYIKFAM. NPFYEPNSPIRSSAFDRKVQFLGKK
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Template Sequence  RKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVEN
Template Known Secondary structure  S
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   180.........190.........200.........210.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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