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Job DescriptionQ9CQP2
Confidence2.68%DateWed Jul 10 14:24:44 BST 2013
Rank77Aligned Residues109
% Identity10%Templatec2vx8D_
PDB info PDB header:endocytosis,exocytosisChain: D: PDB Molecule:nucleoporin-like protein rip, vesicle-associated PDBTitle: vamp7 longin domain hrb peptide complex
Resolution2.2 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.........50.........60...
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Query Sequence  SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKT
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Template Sequence  AILFAVVARGTTILAKHAWCGGN. . . . . . . . . . . . . . FLEVTEQILAKIPSENN. . . . KL
Template Known Secondary structure  STTSS
S
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   45....50.........60....... ..70.........80.... ..
 
   64.....70.........80.........90.........100.........110.........120...
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Query Sequence  VDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRS
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Template Sequence  TYSHGNYLFHYIC. QDRIVYLCITDDDFSR. AFSFLNEVKKRFQTTYGSRAQTALPYAMN
Template Known Secondary structure  TT.TTTT


.TT

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   87..90......... 100.........110..... ....120.........130.........140....
 
   124.....130..
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Query Sequence  SAFDRKVQF
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Template Sequence  SEFSSVLAA
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   147..150.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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