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Job DescriptionQ9CQP2
Confidence99.97%DateWed Jul 10 14:24:44 BST 2013
Rank5Aligned Residues132
% Identity26%Templatec2zmvB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:trafficking protein particle complex subunit 4; PDBTitle: crystal structure of synbindin
Resolution2.80 Å
Model Dimensions (Å)X:50.813 Y:42.606 Z:34.054

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.. .......40.........50
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Query Sequence  GSFYFVIVGHHDNPVFEMEFLPPGKAESKD. . . . . . . . . . . . DHRHLNQFIAHAALDLVD
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Template Sequence  AIFSVYVVNKAGGLIYQLDSYAPRAEAEKTFSYPLDLLLKLHDERVLVAFGQRDGIRVGH
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   2.......10.........20.........30.........40.........50.........60.
 
   51.....
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Query Sequence  ENMWLS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  AVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFGRPRLTSNEKLMLASMFHSLFAI
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   62.......70.........80.........90.........100.........110.........120.
 
   57..60.........70.........80.........90.........100.........110. ...
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Query Sequence  . NNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM. NPF
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Template Sequence  GSSSGI. EMLETDTFKLHCYQTLTGIKFVVLADPRQAG. IDSLLRKIYEIYSDFALKNPF
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   122..... ..130.........140.........150........ .160.........170.........
 
   115....120.........130......
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Query Sequence  YEPNSPIRSSAFDRKVQFLGKK
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Template Sequence  YSLEMPIRCELFDQNLKLALEV
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   187..190.........200........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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