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Job DescriptionP05480
Confidence100.00%DateTue Jul 30 13:01:21 BST 2013
Rank164Aligned Residues249
% Identity22%Templatec4dc2A_
PDB info PDB header:transferase/transferase substrateChain: A: PDB Molecule:protein kinase c iota type; PDBTitle: structure of pkc in complex with a substrate peptide from par-3
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   270.........280.........290......... 300.........310.........320..... ..
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Query Sequence  IPRESLRLEVKLGQGCFGEVWMGTWNGTTR. VAIKTLKPGTMSPEAFLQEAQVMKKL. RH
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Template Sequence  LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNIDWVQTEKHVFEQASNH
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GGG
SSTTTTGGGT


TT
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   239240.........250.........260.........270.........280.........290........
 
   328.330.........340. ........350.........360.........370.........380......
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Query Sequence  EKLVQLYAVVSEEP. IYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVE
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Template Sequence  PFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQR. . KLPEEHARFYSAEISLALNYLH
Template Known Secondary structure  TTB


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TT
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   303......310.........320.........330........ .340.........350.........360
 
   387..390.........400.........410.........420.........430.........440......
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Query Sequence  RMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGR
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Template Sequence  ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKE. GLRPGDTTSTFCGTPNYIAPEILRGED
Template Known Secondary structure  TT
B




GGG
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GGG

TT

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   361........370.........380.........390.. .......400.........410.........
 
   447..450.........460.........470..... ....480.........490.........500....
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Query Sequence  FTIKSDVWSFGILLTELTTKGRVPYPGMV. . NREVLDQVERGYRMPCPPECPESLHDLMC
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Template Sequence  YGFSVDWWALGVLMFEMMA. GRSPFDIVGSNTEDYLFQVILEKQIRIPRSLSVKAASVLK
Template Known Secondary structure  B
T.SS
SSTTTT








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   420.........430........ .440.........450.........460.........470........
 
   505....510..... ....520..
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Query Sequence  QCWRKEPEERP. . . . . . TFEYLQA
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Template Sequence  SFLNKDPKERLGCHPQTGFADIQG
Template Known Secondary structure  T
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TTTSTT
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   485....490.........500........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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