Phyre 2 alignment of P05480 with c3nmzD_

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Job Description | P05480
Confidence | 99.00% | Date | Tue Jul 30 13:01:21 BST 2013
Rank | 462 | Aligned Residues | 71
% Identity | 23% | Template | c3nmzD_
PDB info | PDB header:cell adhesion/cell cycle | Chain: D: PDB Molecule:rho guanine nucleotide exchange factor 4; | PDBTitle: crytal structure of apc complexed with asef
Resolution | 3.01 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 68 | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | S | S | D | T | V | T | S | P | Q | R | A | G | P | L | A | G | G | V | T | T | F | V | A | L | Y | D | Y | E | S | R | T | E | T | D | L | S | F | K | K | G | E | R | L | Q | I | V | N | N | T | R | K | V | D | V | R | E | G | D | W | W
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |
Template Sequence |  | G | G | G | G | E | Q | L | A | I | N | E | L | I | S | D | G | S | V | V | C | A | E | A | L | W | D | H | V | T | M | D | D | Q | E | L | G | F | K | A | G | D | V | I | E | V | M | D | A | T | N | R | E | . | . | . | . | . | . | W | W
Template Known Secondary structure |  | S |  | S |  |  |  |  | S |  |  |  |  |  |  | T | S |  |  |  |  |  |  |  | S | S |  | B |  |  |  |  | T | T | B |  |  | B |  | T | T |  |  |  |  |  |  |  |  |  | S | S | S | . | . | . | . | . | . |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 179 | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 |  |  |  |  |  |  | . | .
|  | 128 | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | A | H | S | L | S | T | G | Q | T | G | Y | I | P | S | N | Y | V | A
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | W | G | R | . | . | V | A | D | G | E | G | W | F | P | A | S | F | V | R
Template Known Secondary structure |  |  |  |  | . | . |  | S | S |  |  |  |  |  |  | G | G | G |  |
Template Predicted Secondary structure |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 233 | . | . |  |  | . | . | . | . | 240 | . | . | . | . | . | . | . | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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