Phyre 2 alignment of P05480 with c2j06B_

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Job Description | P05480
Confidence | 98.95% | Date | Tue Jul 30 13:01:21 BST 2013
Rank | 485 | Aligned Residues | 57
% Identity | 25% | Template | c2j06B_
PDB info | PDB header:signal transduction | Chain: B: PDB Molecule:ras gtpase-activating protein 1; | PDBTitle: crystal structure of the rasgap sh3 domain at 1.8 angstrom2 resolution
Resolution | 1.8 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 86 | . | . | . | 90 | . | . | . | . | . | . | . | . |  | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | T | T | F | V | A | L | Y | D | Y | E | S | R | T | . | E | T | D | L | S | F | K | K | G | E | R | L | Q | I | V | N | N | T | R | K | V | D | V | R | E | G | D | W | W | L | A | H | S | L | S | T | G | Q | T | G | Y | I | P | S | N | Y
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | R | R | V | R | A | I | L | P | Y | T | K | V | P | D | T | D | E | I | S | F | L | K | G | D | X | F | I | V | H | N | E | L | E | D | G | . | . | . | . | . | . | W | X | W | V | T | N | L | R | T | D | E | Q | G | L | I | V | E | D | L
Template Known Secondary structure |  |  |  |  |  |  | S | S |  | B |  |  |  | T | T | S | S | B |  |  | B |  | T | T |  |  |  |  |  |  |  |  |  | G | G | G | . | . | . | . | . | . |  |  |  |  |  |  | T | T | T |  |  |  |  |  |  |  | G | G | G
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 282 | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . |  |  |  |  |  |  | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | .
|  | 145 | . | . | .
Predicted Secondary structure |  |  |  |  |
Query SS confidence |  |  |  |  |
Query Sequence |  | V | A | P | S
Query Conservation |  |  |  |  |
Alig confidence |  |  |  |  |
Template Conservation |  |  |  |  |
Template Sequence |  | V | E | E | V
Template Known Secondary structure |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |
Template SS confidence |  |  |  |  |
|  | 336 | . | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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