01/08/2013 10:45:35 : INFO  : Run start: Thu Aug  1 10:45:35 BST 2013
01/08/2013 10:45:36 : INFO  : Initialised job
01/08/2013 10:45:36 : INFO  : Initialised job:
Sequence
>batch____
MGSNKSKPKDASQRRRSLEPSENVHGAGGAFPASQTPSKPASADGHRGPSAAFVPPAAEP
KLFGGFNSSDTVTSPQRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIVNNTRKVD
VREGDWWLAHSLSTGQTGYIPSNYVAPSDSIQAEEWYFGKITRRESERLLLNAENPRGTF
LVRESETTKGAYCLSVSDFDNAKGLNVKHYKIRKLDSGGFYITSRTQFNSLQQLVAYYSK
HADGLCHRLTTVCPTSKPQTQGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRV
AIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMNKGSLLDFLKG
ETGKYLRLPQLVDMSAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE
DNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVL
DQVERGYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQYQPGEN
L

01/08/2013 10:45:36 : INFO  : Checked sequence
01/08/2013 10:45:36 : INFO  : Finding homologues with PSI-BLAST
01/08/2013 10:45:36 : INFO  : PSI-BLAST 3 iterations
01/08/2013 10:49:09 : INFO  : PSI-BLAST 5 iterations
01/08/2013 10:54:25 : INFO  : Finished PSI-BLAST
01/08/2013 10:54:25 : INFO  : Running Buildali to generate a3m file
01/08/2013 13:24:59 : INFO  : Converting to HMM
01/08/2013 13:25:24 : INFO  : Calibrating HMM
01/08/2013 13:25:40 : INFO  : Searching HMM database
01/08/2013 13:40:05 : INFO  : Finished buildali
01/08/2013 13:40:05 : INFO  : Predicting secondary structure
01/08/2013 13:40:06 : INFO  : Predicted secondary structure (PSI-Pred)
01/08/2013 13:40:06 : INFO  : Predicting Disordered regions
01/08/2013 13:40:06 : INFO  : Predicted Disorder (Disopred)
01/08/2013 13:40:06 : INFO  : Running memsat_svm check
01/08/2013 13:40:42 : INFO  : Globular protein
01/08/2013 13:40:42 : INFO  : Predicted Transmembrane (memsat_svm) ID 'f1d9cbe7c578d7c3'
01/08/2013 13:40:42 : INFO  : Initialising fold library search
01/08/2013 13:40:42 : INFO  : Initialised search input
01/08/2013 13:40:42 : INFO  : Building Ensemble models
01/08/2013 13:40:43 : INFO  : Building hh.c1y57A_.model.1.pdb
01/08/2013 13:40:43 : INFO  : Building hh.c2h8hA_.model.2.pdb
01/08/2013 13:40:44 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/f1d9cbe7c578d7c3/hh.c2h8hA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/f1d9cbe7c578d7c3/c2h8hA_.2.pdb
01/08/2013 13:40:44 : INFO  : Building c1y57A_.1.pdb
01/08/2013 13:40:45 : INFO  : Building c2h8hA_.2.pdb
01/08/2013 13:40:45 : INFO  : Building c2fo0A_.3.pdb
01/08/2013 13:40:46 : INFO  : Building c1oplA_.4.pdb
01/08/2013 13:40:46 : INFO  : Building c2c0iA_.5.pdb
01/08/2013 13:40:47 : INFO  : Building c1k9aB_.6.pdb
01/08/2013 13:40:48 : INFO  : Building c4fl2A_.7.pdb
01/08/2013 13:40:49 : INFO  : Building c2ozoA_.8.pdb
01/08/2013 13:40:49 : INFO  : Building c3cblA_.9.pdb
01/08/2013 13:40:50 : INFO  : Building c2j0kB_.10.pdb
01/08/2013 13:40:51 : INFO  : Building d1qcfa3.11.pdb
01/08/2013 13:40:51 : INFO  : Building d1qpca_.12.pdb
01/08/2013 13:40:52 : INFO  : Building d1opja_.13.pdb
01/08/2013 13:40:52 : INFO  : Building c4im2A_.14.pdb
01/08/2013 13:40:53 : INFO  : Building d1fmka3.15.pdb
01/08/2013 13:40:53 : INFO  : Building c3pfqA_.16.pdb
01/08/2013 13:40:54 : INFO  : Building d1u59a_.17.pdb
01/08/2013 13:40:54 : INFO  : Building c3nyoB_.18.pdb
01/08/2013 13:40:55 : INFO  : Building c3qa8H_.19.pdb
01/08/2013 13:40:57 : INFO  : Building c3zzwA_.20.pdb
01/08/2013 13:41:05 : INFO  : Finished HH model building
01/08/2013 13:41:05 : WARN  : Set python to /bmm/www/servers/phyre2/bin//python2.7/2.7.2/bin/python2.7
01/08/2013 13:41:13 : INFO  : html domain output complete ID 'f1d9cbe7c578d7c3'
01/08/2013 15:26:17 : INFO  : Run end  : Thu Aug  1 15:26:17 BST 2013
