Job Description Q9JJP2 Confidence 97.50% Date Wed Jul 10 14:03:07 BST 2013 Rank 40 Aligned Residues 73 % Identity 14% Template c1oxjA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:rna-binding protein smaug; PDBTitle: crystal structure of the smaug rna binding domain Resolution 1.80 Å

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		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	V	S	F	L	T	G	L	G	C	P	N	C	I	E	C	F	T	S	Q	G	L	Q	S	I	Y	H	L	Q	N	L	T	I	E	D	L	G	A	L	K	V	P	D	Q	Y	R	M	T	I	W	R	G	L	Q	D	L	K	Q	S
Query Conservation
Alig confidence																									.	.	.
Template Conservation																									.	.	.
Template Sequence		G	I	G	L	W	L	K	S	L	R	L	H	K	Y	I	E	L	F	K	N	M	T	Y	.	.	.	E	E	M	L	L	I	T	E	D	F	L	Q	S	V	G	V	T	K	G	A	S	H	K	L	A	L	C	I	D	K	L	K	E	R
Template Known Secondary structure		T								T	T		G	G	G	G	G	G	G	T	T				.	.	.				T	T									T	T
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.				.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	C	G	Q	Q	L	L	R	S	S	S	N	A	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	N	I	L	N	R	V	E	Q	E	L	L	S	G	Q	M
Template Known Secondary structure														T	T		S
Template Predicted Secondary structure
Template SS confidence
		657	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D