Phyre 2 alignment of P59048 with c4exmB_

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Job Description | P59048
Confidence | 6.76% | Date | Wed Jul 10 14:04:54 BST 2013
Rank | 52 | Aligned Residues | 54
% Identity | 17% | Template | c4exmB_
PDB info | PDB header:toxin, hydrolase | Chain: B: PDB Molecule:pesticin, lysozyme chimera; | PDBTitle: the crystal structure of an engineered phage lysin containing the2 binding domain of pesticin and the killing domain of t4-lysozyme
Resolution | 2.60 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 36 | . | . | . | 40 | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  | 50 | . | . | . | . | . | . | . | . |  | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | K | R | N | Q | N | R | E | G | L | R | A | L | Q | K | . | . | . | . | . | . | . | D | L | S | V | S | E | D | V | M | . | V | C | F | G | N | M | F | I | K | M | P | H | P | K | T | K | E | M | I | Q | K | D | Q | E | H | L | D | K | E
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | R | R | S | V | N | I | V | I | F | E | M | L | R | I | D | E | R | L | R | L | K | I | Y | K | D | T | E | G | Y | Y | T | I | G | I | G | H | L | G | . | V | I | T | K | D | E | A | E | K | L | F | N | Q | D | V | D | A | A | V | R | G
Template Known Secondary structure |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  | T | T | B |  |  | . | B |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 166 | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . |  | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | .
|  | 88 | . | 90
Predicted Secondary structure |  |  |  |
Query SS confidence |  |  |  |
Query Sequence |  | I | E | R
Query Conservation |  |  |  |
Alig confidence |  |  |  |
Template Conservation |  |  |  |
Template Sequence |  | I | L | R
Template Known Secondary structure |  |  |  | T
Template Predicted Secondary structure |  |  |  |
Template SS confidence |  |  |  |
|  | 248 | . | 250

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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