Phyre 2 alignment of P59048 with c3eoeC_

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Job Description | P59048
Confidence | 4.88% | Date | Wed Jul 10 14:04:54 BST 2013
Rank | 81 | Aligned Residues | 64
% Identity | 20% | Template | c3eoeC_
PDB info | PDB header:transferase | Chain: C: PDB Molecule:pyruvate kinase; | PDBTitle: crystal structure of pyruvate kinase from toxoplasma gondii, 55.m00007
Resolution | 2.31 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . |  |  |  |  |  | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | E | A | V | L | S | D | K | R | Q | I | V | D | L | D | T | K | . | . | . | . | . | R | N | Q | N | R | E | G | L | R | A | L | Q | K | D | L | S | V | S | E | D | V | M | V | C | F | G | N | M | F | I | K | M | P | H | P | K | T | K
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | .
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | .
Template Sequence |  | A | D | D | V | R | Y | I | R | G | L | L | G | P | R | G | R | H | I | R | I | I | P | K | I | E | N | V | E | G | L | V | N | F | D | E | I | L | A | E | A | D | G | I | M | I | A | R | G | D | L | G | M | E | I | P | P | E | K | V | .
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | T | T | T |  |  |  |  |  |  |  |  | S |  |  |  |  |  | T |  |  |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  | T | T | T | S |  | G | G | G |  | .
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | .
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 233 | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . |
|  | 75 | . | . | . | . | 80 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | E | M | I | Q | K | D | Q | E | H | L
Query Conservation |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | F | L | A | Q | K | M | M | I | A | K
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |
|  | 292 | . | . | . | . | . | . | . | 300 | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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