Job Description Q62415 Confidence 76.24% Date Tue Jul 30 13:16:45 BST 2013 Rank 360 Aligned Residues 286 % Identity 10% Template c4dvzA_ PDB info PDB header:oncoprotein Chain: A: PDB Molecule:cytotoxicity-associated immunodominant antigen; PDBTitle: crystal structure of the helicobacter pylori caga oncoprotein Resolution 3.19 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	L	T	V	F	L	S	N	N	E	Q	I	L	T	E	V	P	I	T	P	E	T	T	C	R	D	V	V	E	F	C	K	E	P	G	E	G	G	C	H	L	A	E	V	W	R	G	S	E	R	P	I	P	Y	D	H	M	M	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	F	V	D	Y	S	F	N	K	V	A	V	F	N	L	P	D	L	N	N	L	A	I	T	S	F	V	R	R	N	L	E	N	K	L	T	A	K	G	L	S	L	Q	E	A	N	K	L	I	K	D	F	L	S	S	N	K	E	L	A
Template Known Secondary structure																		S	S		T	T	T	T	T														T	T
Template Predicted Secondary structure
Template SS confidence
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	L	Q	K	W	G	P	R	R	E	E	V	K	F	F	L	R	H	E	D	S	P	T	E	S	S	E	Q	G	A	R	Q	T	Q	E	Q	R	T	Q	R	S	V	V	N	V	P	G	E	K	R	T	E	N	G	V	G	N	P	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	K	A	L	N	F	N	K	A	V	A	E	A	K	S	T	G	N	Y	D	E	V	K	K	A	Q	K	D	L	E	K	S	L	R	K	R	E	H	L	E	K	E	V	E	K	K	L	E	S	K	S	G	N	K	K	A	Q	A	N	S
Template Known Secondary structure																																																		T	T	T
Template Predicted Secondary structure
Template SS confidence
		591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	L	T	L	S	E	L	Q	D	M	A	A	R	Q	Q	Q	Q	I	E	N	Q	Q	Q	M	L	V	A	K	E	Q	R	L	H	F	L	K	Q	Q	E	R	R	Q	Q	Q	S	V	S	E	N	E	K	L	Q	K	L	K	E	R	V
Query Conservation
Alig confidence																																		.	.	.
Template Conservation																																		.	.	.
Template Sequence		Q	K	D	E	I	F	A	L	I	N	K	E	A	N	R	D	A	R	A	I	A	Y	T	Q	N	L	K	G	I	K	R	E	.	.	.	L	S	D	K	L	E	K	I	S	K	D	L	K	D	F	S	K	S	F	D	E	F	K	N	F
Template Known Secondary structure																																		.	.	.
Template Predicted Secondary structure																																		.	.	.
Template SS confidence
		656	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.				.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	Q	E	N	K	L	K	K	I	R	A	M	R	G	Q	V	D	Y	S	K	I	M	N	G	N	L	S	A	E	I	E	R	F	S	A	M	F	Q	E	K	K	Q	E	V	Q	T	A	I	L	R	V	D	Q	L	S	Q	Q	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	K	A	E	E	T	L	K	A	L	K	G	S	V	K	D	L	G	I	N	P	E	W	I	S	K	V	E	N	L	N	A	A	L	N	E	F	K	N	G	D	F	S	K	V	T	Q	A	K	S	D	L	E	N	S	V	K	D	V	I
Template Known Secondary structure																																								T			T
Template Predicted Secondary structure
Template SS confidence
		718	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	K	K	G	K	L	N	G	F	Q	S	Y	N	G	R	L	T	G	P	A	A	V	E	L	K	R	L	Y	Q	E	L	Q	I	R	N	Q	L	N	Q	E	Q	N	S	K	L	Q	Q	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	N	Q	K	V	T	D	K	V	D	N	L	N	Q	A	V	S	V	A	K	A	M	G	D	F	S	R	V	E	Q	V	L	A	D	L	K	N	F	S	K	E	Q	L	A	Q	Q	A	Q	K
Template Known Secondary structure																								T		T																						T	T
Template Predicted Secondary structure
Template SS confidence
		781	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D