Job Description Q62415 Confidence 81.78% Date Tue Jul 30 13:16:45 BST 2013 Rank 354 Aligned Residues 238 % Identity 13% Template c3vkhA_ PDB info PDB header:motor protein Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic; PDBTitle: x-ray structure of a functional full-length dynein motor domain Resolution 3.80 Å

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		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	C	H	L	A	E	V	W	R	G	S	E	R	P	I	P	Y	D	H	M	M	Y	E	H	L	Q	K	W	G	P	R	R	E	E	V	K	F	F	L	R	H	E	D	S	P	T	E	S	S	E	Q	G	A	R	Q	T	Q	E	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	N	Q	V	V	L	L	I	N	E	K	R	D	Q	L	E	E	E	Q	L	H	L	N	I	G	L	K	K	L	R	D	T	E	A	Q	V	K	D	L	Q	V	S	L	A	Q	K	N	R	E	L	D	V	K	N	E	Q	A	N	Q	K
Template Known Secondary structure																																																												T
Template Predicted Secondary structure
Template SS confidence
		3264	.	.	.	.	.	3270	.	.	.	.	.	.	.	.	.	3280	.	.	.	.	.	.	.	.	.	3290	.	.	.	.	.	.	.	.	.	3300	.	.	.	.	.	.	.	.	.	3310	.	.	.	.	.	.	.	.	.	3320	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		R	T	Q	R	S	V	V	N	V	P	G	E	K	R	T	E	N	G	.	V	G	N	P	R	V	E	L	T	L	S	E	L	Q	D	M	A	A	R	Q	Q	Q	Q	I	E	N	Q	Q	Q	M	L	V	A	K	E	Q	R	L	H	F	L
Query Conservation																				.
Alig confidence																				.
Template Conservation
Template Sequence		L	K	Q	M	V	Q	D	Q	Q	A	A	E	I	K	Q	K	D	A	R	E	L	Q	V	Q	L	D	V	R	N	K	E	I	A	V	Q	K	V	K	A	Y	A	D	L	E	K	A	E	P	A	I	I	E	A	Q	E	A	V	S	T	I
Template Known Secondary structure													T					T	S	G	G	G	G	G	T	T	T						T											G	G	G	T	S	T											S
Template Predicted Secondary structure
Template SS confidence
		3324	.	.	.	.	.	3330	.	.	.	.	.	.	.	.	.	3340	.	.	.	.	.	.	.	.	.	3350	.	.	.	.	.	.	.	.	.	3360	.	.	.	.	.	.	.	.	.	3370	.	.	.	.	.	.	.	.	.	3380	.	.	.
		160	.	.	.	.	.	.									.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Q	Q	E	R	R	Q	.	.	.	.	.	.	.	.	Q	Q	S	V	S	E	N	E	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation									.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	K	K	H	L	D	E	I	K	S	L	P	K	P	P	T	P	V	K	L	A	M	E	A	V	C	L	M	L	G	G	K	K	L	E	W	A	D	I	R	K	K	I	M	E	P	N	F	I	T	S	I	I	N	Y	D	T	K	K	M
Template Known Secondary structure													S	S																T	T												G	G	G		T	T							T			T	T
Template Predicted Secondary structure
Template SS confidence
		3384	.	.	.	.	.	3390	.	.	.	.	.	.	.	.	.	3400	.	.	.	.	.	.	.	.	.	3410	.	.	.	.	.	.	.	.	.	3420	.	.	.	.	.	.	.	.	.	3430	.	.	.	.	.	.	.	.	.	3440	.	.	.
																							177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	K	L	K	E	R	V	E	A	Q	E	N	K	L	K	K	I	R	A	M	R	G	Q	V	D	Y	S	K	I	M	N	G	N	L	S	A	E	I	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	T	P	K	I	R	E	A	I	T	K	G	Y	L	E	D	P	G	F	D	Y	E	T	V	N	R	A	S	K	A	C	G	P	L	V	K	W	A	T	A	Q	T	Y	Y	S	E	I	L	K	L	K	Q	D	E	I	V	A	T	I	T
Template Known Secondary structure			T	T	T									T	T	T		T	T											T	T																T	T				S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		3444	.	.	.	.	.	3450	.	.	.	.	.	.	.	.	.	3460	.	.	.	.	.	.	.	.	.	3470	.	.	.	.	.	.	.	.	.	3480	.	.	.	.	.	.	.	.	.	3490	.	.	.	.	.	.	.	.	.	3500	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	S	A	M	F	Q	E	K	K	Q	E	V	Q	T	A	I	L	R	V	D	Q	L	S	Q	Q	L	E	D	L	K	K	G	K	L	N	G	F	Q	S	Y	N	G	R	L	T	G	P	A	A	V	E	L	K	R	L	Y	Q	E	L
Query Conservation
Alig confidence																																													.	.	.	.	.
Template Conservation																																													.	.	.	.	.
Template Sequence		A	L	E	K	S	I	A	T	Y	K	E	E	Y	A	T	L	I	R	E	T	E	Q	I	K	T	E	S	S	K	V	K	N	K	V	D	R	S	I	A	L	L	D	N	.	.	.	.	.	L	N	S	E	R	G	R	W	E	Q	Q	S
Template Known Secondary structure											T	T	S																																.	.	.	.	.
Template Predicted Secondary structure																																													.	.	.	.	.
Template SS confidence
		3524	.	.	.	.	.	3530	.	.	.	.	.	.	.	.	.	3540	.	.	.	.	.	.	.	.	.	3550	.	.	.	.	.	.	.	.	.	3560	.	.	.	.	.	.						.	.	.	3570	.	.	.	.	.	.	.	.
		276	.	.	.	280	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	R	N	Q	L	N	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	F	N	T	Q	M	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		3579	3580	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D