Job Description Q62415 Confidence 29.61% Date Tue Jul 30 13:16:45 BST 2013 Rank 460 Aligned Residues 209 % Identity 7% Template c2lemA_ PDB info PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein a-i; PDBTitle: monomeric mouse apoai(1-216) Resolution UNK

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		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	T	E	N	G	V	G	N	P	R	V	E	L	T	L	S	E	L	Q	D	M	A	A	R	Q	Q	Q	Q	I	E	N	Q	Q	Q	M	L	V	A	K	E	Q	R	L	H	F	L	K	Q	Q	E	R	R	Q	Q	Q	S	V	S	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	W	D	K	V	K	D	F	A	N	V	Y	V	D	A	V	K	D	S	G	R	D	Y	V	S	Q	F	E	S	S	S	L	G	Q	Q	L	N	L	N	L	L	E	N	W	D	T	L	G	S	T	V	S	Q	L	Q	E	R	L	G	P
Template Known Secondary structure																																												T	T	T	T						S	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	E	K	L	Q	K	L	K	E	R	V	E	A	Q	E	N	K	L	K	K	I	R	A	M	R	G	Q	V	D	Y	S	K	I	M	N	G	N	L	S	A	E	I	E	R	F	S	A	M	F	Q	E	K	K	Q	E	V	Q	T	A	I
Query Conservation
Alig confidence																																																											.	.	.
Template Conservation																																																											.	.	.
Template Sequence		L	T	R	D	F	W	D	N	L	E	K	E	T	D	W	V	R	Q	E	M	N	K	D	L	E	E	V	K	Q	K	V	Q	P	Y	L	D	E	F	Q	K	K	W	K	E	D	V	E	L	Y	R	Q	K	A	S	P	Q	G	.	.	.
Template Known Secondary structure																																T	T	T	T																			T	S				.	.	.
Template Predicted Secondary structure																																																											.	.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	V	D	Q	L	S	Q	Q	L	E	D	L	K	K	G	K	L	N	G	F	Q	S	Y	N	G	R	L	T	G	P	A	A	V	E	L	K	R	L	Y	Q	E	L	Q	I	R	N	Q	L	N	Q	E	Q	N	S	K	L	Q	Q	Q
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	A	E	L	Q	E	S	A	R	Q	K	L	Q	E	L	Q	G	R	L	S	P	V	A	E	E	F	R	D	R	M	R	T	H	V	D	S	L	R	T	Q	L	A	P	H	S	E	Q	M	R	E	S	L	A	Q	R	L	A	E
Template Known Secondary structure		.	.	.										S			S	S			S		S	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	L	L	N	K	R	N	M	E	V	A	M	M	D	K	R	I	S	E	L	R	E	R	L	Y	G	K	K	I	Q	L	N	R	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	S	N	P	T	L	N	E	Y	H	S	S	A	K	S	H	L	K	S	L	G	E	K	A	R	P	A	L	E	D	L	R	H	S
Template Known Secondary structure															S	S	S								T	S		T	T	T						S
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D