Job Description O08908 Confidence 99.96% Date Wed Jul 10 14:15:46 BST 2013 Rank 17 Aligned Residues 170 % Identity 27% Template c2ovjA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rac gtpase-activating protein 1; PDBTitle: the crystal structure of the human rac gtpase activating protein 12 (racgap1) mgcracgap. Resolution 1.49 Å Model Dimensions (Å) X:53.815 Y:44.939 Z:36.393

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		112	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.									.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure								.																															.	.	.	.	.	.	.	.
Query SS confidence								.																															.	.	.	.	.	.	.	.
Query Sequence		P	D	L	A	E	Q	.	F	S	P	P	D	P	A	P	P	I	L	V	K	L	V	E	A	I	E	Q	A	E	L	D	S	E	C	Y	S	K	.	.	.	.	.	.	.	.	P	E	L	P	A	T	R	T	D	W	S	L	S	D	L
Query Conservation								.																															.	.	.	.	.	.	.	.
Alig confidence								.																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	M	L	A	D	F	V	S	Q	T	S	P	M	I	P	S	I	V	V	H	C	V	N	E	I	E	Q	R	G	L	T	E	T	G	L	Y	R	I	S	G	C	D	R	T	V	K	E	L	K	E	K	F	L	R	V	K	T	V	P	L
Template Known Secondary structure				G	G	G	G			S	S	S	S																	T	T	T	S	T	T	T	T	T	S																T	T		S
Template Predicted Secondary structure
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
				163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																										.	.	.
Query SS confidence		.	.																										.	.	.
Query Sequence		.	.	E	Q	W	D	R	T	A	L	Y	D	A	V	K	G	F	L	L	A	L	P	A	A	V	V	T	.	.	.	P	E	A	A	A	E	A	Y	R	A	L	R	E	V	A	G	P	V	G	L	V	L	E	P	P	T	L	P	L	H
Query Conservation		.	.																										.	.	.
Alig confidence		.	.																										.	.	.
Template Conservation
Template Sequence		L	S	K	V	D	D	I	H	A	I	C	S	L	L	K	D	F	L	R	N	L	K	E	P	L	L	T	F	R	L	N	R	A	F	M	E	A	A	E	I	T	D	E	D	N	S	I	A	A	M	Y	Q	A	V	G	E	L	P	Q	A
Template Known Secondary structure		G	G	G																	T	S	S	S		T	T		T	T	T											S	S														T	S
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	L	T	L	R	F	L	L	Q	H	L	G	R	V	A	R	R	A	P	S	P	D	T	A	V	H	A	L	A	S	A	F	G	P	L	L	L	R	I	P	P	S	G	G	E	G	D	G	S	E	P	V	P	D	F	P	V	L	L
Query Conservation
Alig confidence																			.
Template Conservation																			.
Template Sequence		N	R	D	T	L	A	F	L	M	I	H	L	Q	R	V	A	Q	.	S	P	H	T	K	M	D	V	A	N	L	A	K	V	F	G	P	T	I	V	A	H	A	V	P	N	P	D	P	V	T	M	L	Q	D	I	K	R	Q	P	K	V
Template Known Secondary structure																			.		T	T	S																T			S	S	S	S
Template Predicted Secondary structure																			.
Template SS confidence
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.		.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
		278	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	R	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	R	L	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		528	.	530	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D