Job Description O08908 Confidence 33.44% Date Wed Jul 10 14:15:46 BST 2013 Rank 398 Aligned Residues 129 % Identity 14% Template c2jeuA_ PDB info PDB header:transcription Chain: A: PDB Molecule:regulatory protein e2; PDBTitle: transcription activator structure reveals redox control of2 a replication initiation reaction Resolution 2.8 Å

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		521	.	.	.	.	.	.	.	.	530	.	.	.					.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.		.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.
Predicted Secondary structure															.	.	.	.																										.
Query SS confidence															.	.	.	.																										.
Query Sequence		R	L	K	S	R	I	A	E	I	H	E	S	R	.	.	.	.	T	K	L	E	Q	D	L	R	A	Q	A	S	D	N	R	E	I	D	K	R	M	N	S	L	K	.	P	D	L	M	Q	L	R	K	I	R	D	Q	Y	L	V	W	L
Query Conservation															.	.	.	.																										.
Alig confidence															.	.	.	.																										.
Template Conservation
Template Sequence		T	A	C	E	R	L	H	V	A	Q	E	T	Q	M	Q	L	I	E	K	S	S	D	K	L	Q	D	H	I	L	Y	W	T	A	V	R	T	E	N	T	L	L	Y	A	A	R	K	K	G	V	T	V	L	G	H	C	R	V	P	H	S
Template Known Secondary structure																							S																								T	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
		576	.	.	.	580	.	.		.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		T	Q	K	G	A	R	Q	.	R	K	I	N	E	W	L	G	I	K	N	E	T	E	D	Q	Y	S	L	M	E	D	E	D	A	L	P	H	H	E	E	R	T	W	Y	V	G	K	I	N	R	T	Q	A	E	E	M	L	S	G	K	R
Query Conservation									.
Alig confidence									.																						.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template Sequence		V	V	C	Q	E	R	A	K	Q	A	I	E	M	Q	L	S	L	Q	E	L	S	K	T	E	F	G	D	E	P	.	.	.	.	.	.	.	.	.	.	.	.	W	S	L	L	D	T	S	W	.	.	.	.	D	R	Y	M	S	E	P
Template Known Secondary structure																							T	S	G	G	G	G	S		.	.	.	.	.	.	.	.	.	.	.	.			T	T	T	T			.	.	.	.					S	S	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.													.	.	.	.	.	.	.	.					100	.	.	.	.	.	.
		635	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.									.	.	660	.	.	.	.	.	.	.	.	.	670	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.
Query Sequence		D	G	T	F	L	I	R	E	S	S	Q	R	G	C	Y	A	C	S	V	V	V	D	G	.	.	.	.	.	.	.	.	D	T	K	H	C	V	I	Y	R	T	A	T	G	F
Query Conservation																									.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.														.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.
Template Sequence		K	R	C	F	.	.	.	.	.	.	K	K	G	A	R	V	V	E	V	E	F	D	G	N	A	S	N	T	N	W	Y	T	V	Y	S	N	L	Y	M	R	T	E	D	G	W
Template Known Secondary structure		T	T			.	.	.	.	.	.												T	T																			T	T
Template Predicted Secondary structure						.	.	.	.	.	.
Template SS confidence
		107	.	.	110							.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D