 |
| Job Description | O08908 | | Confidence | 97.00% | Date | Wed Jul 10 14:15:46 BST 2013 |
| Rank | 330 | Aligned Residues | 96 |
| % Identity | 24% | Template | c1bg1A_ |
| PDB info |
PDB header:transcription/dna | Chain: A: PDB Molecule:protein (transcription factor stat3b); |
PDBTitle: transcription factor stat3b/dna complex
|
| Resolution | 2.25 Å |
|
 |
|   |   |
616 | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | |
|
. | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | . | . | . | . | . | 670 | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
| . | . |
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
W | Y | V | G | K | I | N | R | T | Q | A | E | E | M | L | S | G | K | R | D | G | T | F | L | I | R | E | S | S | Q | . |
. |
R | G | C | Y | A | C | S | V | V | V | D | G | D | T | K | H | C | V | I | Y | R | T | A | T | G | F | G | F |
| Query Conservation |   |
|   |
|
|   |
|   |
|   |
|
|
|
|
|
|   |   |   |   |
|
|
|
|
|
|
|   |
|   |   | . | . |   |
|   |
|
|
|
|   |   |   |   |   |   |
|   |
|   |   |
|   |   |   |   |   |
|   |   |
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|   |   |
|
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |
| Template Sequence |   |
Y | I | M | G | F | I | S | K | E | R | E | R | A | I | L | S | T | K | P | P | G | T | F | L | L | R | F | S | E | S | S | K | E | G | G | V | T | F | T | W | V | E | K | D | I | . |
. |
. |
. |
. |
. |
. |
S | G | S | T | Q | I | Q | S |
| Template Known Secondary structure |   |
|
|
| B |
|
|
| T | T | G | G | G | T | T | T | T | T | S |
| T | T |
| B |
|  |  |  |
| S | S |
| S | S |
|
|  |  |  |
|
|
|
| S | S | S | . | . | . | . | . | . | . |
| S | S |
|
|
|
|
|
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
584 | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
. | 630 | . | . | . | . | . | . |
|   |
|   |   |
674 | . | . | . | . | . | 680 | . | |
|
|
|
. | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720 | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|
|
| . | . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
A | E | P | Y | N | L | Y | G | . |
. |
. |
. |
S | L | K | E | L | V | L | H | Y | Q | H | A | S | L | V | Q | H | N | D | A | L | T | V | T | L | A | H | P | V | R | A | P | G | P | G | P | P | S | A | A | R |
| Query Conservation |   |
  |   |   |   |   |   |   |   | . | . | . | . |
|
|   |   |
|
|   |
|
|   |   |   |
|
|   |   |
|
|
|   |
|   |
|   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
| Template Sequence |   |
V | E | P | Y | T | K | Q | Q | L | N | N | M | S | F | A | E | I | I | M | G | Y | K | I | M | D | . |
. |
. |
. |
A | T | N | I | L | V | S | P | L | V | Y | L | Y | P | D | I | P | K | E | E | A | F | G | K |
| Template Known Secondary structure |   |
|
|
| B |
| G | G | G | G | T | S | S |
|  |  |  |  | T | T | S |
|
|
| B |
| . | . | . | . | T | T | S | S | B |
|
|
|
| S | S | B | T | T | T | B |
| T | T | T | T | T | G | G |
| Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
637 | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | |
|
|
|
. | . | . | . | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
Phyre2 is part of Genome3D |
|