Job Description A0JNT9 Confidence 47.79% Date Wed Jul 10 14:25:48 BST 2013 Rank 41 Aligned Residues 375 % Identity 9% Template c4hpqC_ PDB info PDB header:protein transport Chain: C: PDB Molecule:atg17; PDBTitle: crystal structure of the atg17-atg31-atg29 complex Resolution 3.06 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	L	S	E	Q	N	Q	R	L	L	D	Q	L	S	R	A	S	E	V	E	R	Q	L	S	M	Q	V	H	A	L	K	E	D	F	R	E	K	N	S	S	T	N	Q	H	I	I	R	L	E	S	L	Q	A	E	I	K	M	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	I	E	K	L	L	E	N	S	R	K	F	L	T	G	A	K	L	I	C	Q	E	S	N	D	H	L	T	T	T	K	L	R	I	R	E	W	Q	K	F	Q	S	K	L	H	F	V	L	D	C	I	Q	Q	Q	T	K	F	L	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	R	K	R	E	L	E	H	R	L	S	A	T	L	E	E	N	D	L	L	Q	G	T	V	E	E	L	Q	D	R	V	L	I	L	E	R	Q	G	H	D	K	D	L	Q	L	H	Q	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	L	L	R	E	G	I	G	R	N	L	I	E	E	E	W	S	Q	T	V	L	V	R	L	V	N	D	M	K	F	W	Q	N	E	I	T	K	M	M	N	K	L	D	N	I	T	N	E	I	D	Q	Q	H	N	S	K	L	G	D
Template Known Secondary structure																							T	T																						T	S					S	S	S				T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
				310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360			.	.	.	.	.
Predicted Secondary structure		.	.																																																				.	.
Query SS confidence		.	.																																																				.	.
Query Sequence		.	.	S	Q	L	E	L	Q	E	V	R	L	S	Y	R	Q	L	Q	G	K	V	E	E	L	T	E	E	R	S	L	Q	S	S	A	A	T	S	T	S	L	L	S	E	I	E	Q	S	M	E	A	E	E	L	.	.	E	Q	E	R	E
Query Conservation		.	.																																																				.	.
Alig confidence		.	.																																																				.	.
Template Conservation
Template Sequence		F	I	S	R	D	S	S	H	I	L	D	S	K	L	N	E	I	P	T	I	R	K	Q	V	E	N	I	T	R	Q	Y	Q	T	M	L	A	K	V	Q	S	Q	L	V	E	S	R	M	K	G	L	R	D	E	F	S	E	E	F	T	N
Template Known Secondary structure		S	S			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	R	L	Q	L	W	E	A	Y	C	Q	V	R	Y	L	C	S	H	L	R	G	N	D	S	A	D	S	A	V	S	T	D	S	S	M	D	E	S	S	E	T	S	S	A	K	D	V	P	A	G	S	L	R	T	A	L	N	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	D	Q	L	E	Q	E	L	A	D	F	L	K	S	F	T	D	H	F	D	K	C	S	A	L	S	S	R	S	V	S	P	E	D	A	Q	N	L	F	E	I	V	E	R	D	D	K	D	L	A	A	I	N	S	L	L	Q	D	A
Template Known Secondary structure																											T	T	T	T	S			S	S
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.		.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		K	R	L	I	Q	S	I	V	D	G	V	E	P	T	V	T	L	L	S	V	E	M	T	A	L	K	E	E	R	D	R	L	.	R	V	T	S	E	D	K	E	P	K	E	Q	L	Q	K	A	I	R	D	R	D	E	A	I	A	K	K
Query Conservation																																		.
Alig confidence																																		.
Template Conservation
Template Sequence		A	I	D	V	A	S	F	V	R	K	V	N	M	L	L	D	E	R	D	A	D	K	A	K	M	Q	A	T	L	S	K	L	L	T	E	L	R	K	H	E	E	Y	I	S	V	F	E	G	I	S	A	L	I	Q	K	F	K	A	S	C
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	V	E	L	E	L	A	K	C	K	M	D	M	M	S	L	N	S	Q	L	L	D	A	I	Q	Q	K	L	N	L	S	Q	Q	L	E	A	W	Q	D	D	M	H	R	V	I	D	R	Q	L	M	D	T	H	L	K	E	Q	S	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	D	I	R	Q	T	R	N	L	L	D	F	Y	A	N	F	E	R	S	Y	H	N	L	L	K	E	V	K	R	R	K	E	T	A	A	K	L	S	Q	I	L	K	S	C	E	T	Q	L	E	Q	I	N	T	A	D	L	R	E	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	A	A	A	F	P	R	G	H	G	V	G	R	G	Q	E	P	S	T	A	D	G	K	R	L	F	S	F	F	R	K	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	M	F	L	L	E	N	G	N	Y	L	P	E	T	I	W	P	D	E	I	G	S	L	S	P	L	Y	T	L	N	Y	E	V
Template Known Secondary structure								S	S	S	S	S		G	G	G	S	T	T	T	S	S					S
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D