Job Description A0JNT9 Confidence 94.74% Date Wed Jul 10 14:25:48 BST 2013 Rank 8 Aligned Residues 181 % Identity 11% Template c3ojaA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex Resolution 2.70 Å Model Dimensions (Å) X:83.152 Y:89.703 Z:127.748

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		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	G	E	R	S	S	E	P	G	E	H	P	Q	A	E	P	E	S	P	V	E	G	H	G	P	P	L	P	P	P	P	T	Q	D	P	E	L	L	S	V	I	R	Q	K	E	K	D	L	V	L	A	A	R	L	G	K	A	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	F	A	D	R	L	I	A	L	K	R	K	E	H	A	L	L	S	T	E	R	L	E	C	E	R	E	N	Q	A	R	Q	R	E	I	D	A	L	K	E	Q	Y	R	T	V	I	D	Q	V	T	L	R	K	Q	A	K	I	T	L	E
Template Known Secondary structure																	S																										T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	N	Q	D	M	S	R	Q	Y	E	Q	M	H	K	E	L	T	D	K	L	E	H	L	E	Q	E	K	H	E	L	R	R	R	F	E	N	R	E	G	E	W	E	G	R	V	S	E	L	E	T	D	V	K	Q	L	Q	D	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	K	K	K	A	L	D	E	Q	V	S	N	G	R	R	A	H	A	E	L	D	G	T	L	Q	Q	A	V	G	Q	I	E	L	Q	H	A	T	E	E	Q	S	P	L	Q	L	L	R	A	I	V	K	R	Y	E	E	M	Y	V	E	Q
Template Known Secondary structure																													T	T	S	S						S	S
Template Predicted Secondary structure
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	Q	Q	L	H	L	R	E	A	D	R	E	K	T	R	A	V	Q	E	L	S	E	Q	N	Q	R	L	L	D	Q	L	S	R	A	S	E	V	E	R	Q	L	S	M	Q	V	H	A	L	K	E	D	F	R	E	K	N	S	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	S	V	Q	N	N	A	I	R	D	W	D	M	Y	Q	H	K	E	T	Q	L	A	E	E	N	A	R	L	K	K	L	N	G	E	A	D	L	A	L	A	S	A	N	A	T	L	Q	E	L	V	V	R	E	Q	N	L	A	S	Q	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
		245
Predicted Secondary structure
Query SS confidence
Query Sequence		N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		509

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D