Job Description A0JNT9 Confidence 5.00% Date Wed Jul 10 14:25:48 BST 2013 Rank 98 Aligned Residues 83 % Identity 8% Template c2v4hA_ PDB info PDB header:transcription Chain: A: PDB Molecule:nf-kappa-b essential modulator; PDBTitle: nemo cc2-lz domain - 1d5 darpin complex Resolution 2.9 Å

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		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.				.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence		P	L	P	P	P	P	T	Q	D	P	E	L	L	S	V	I	R	Q	K	E	K	D	L	V	L	A	A	R	L	G	K	A	L	L	.	.	.	E	R	N	Q	D	M	S	R	Q	Y	E	Q	M	H	K	E	L	T	D	K	L	E	H
Query Conservation																																				.	.	.
Alig confidence																																				.	.	.
Template Conservation
Template Sequence		Q	L	E	D	L	R	Q	Q	L	Q	Q	A	E	E	A	L	V	A	K	Q	E	L	I	D	K	L	K	E	E	A	E	Q	H	K	I	V	M	E	T	V	P	V	L	K	A	Q	A	D	I	Y	K	A	D	F	Q	A	E	R	H	A
Template Known Secondary structure																																							T
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	Q	E	K	H	E	L	R	R	R	F	E	N	R	E	G	E	W	E	G	R	V	S	E	L	E
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		R	E	K	L	V	E	K	K	E	Y	.	L	Q	E	Q	L	E	Q	L	Q	R	E	F	N	K	L	K
Template Known Secondary structure												.													T	T
Template Predicted Secondary structure												.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.		.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D