Job Description A2A432 Confidence 100.00% Date Tue Jul 30 13:09:03 BST 2013 Rank 11 Aligned Residues 292 % Identity 30% Template c4eozD_ PDB info PDB header:protein binding Chain: D: PDB Molecule:cullin-3; PDBTitle: crystal structure of the spop btb domain complexed with the cul3 n-2 terminal domain Resolution 2.40 Å Model Dimensions (Å) X:101.381 Y:56.915 Z:40.396

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	P	E	N	Y	T	D	E	T	W	Q	K	L	K	E	A	V	E	A	I	Q	N	S	T	S	I	K	Y	N	L	E	E	L	Y	Q	A	V	E	N	L	C	S	H	K	I	S	A	N	L	Y	K	Q	L	R	Q	I	C	E	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	X	D	E	K	Y	V	N	S	I	W	D	L	L	K	N	A	I	Q	E	I	Q	R	K	N	N	S	G	L	S	F	E	E	L	Y	R	N	A	Y	T	X	V	L	H	K	H	G	E	K	L	Y	T	G	L	R	E	V	V	T	E
Template Known Secondary structure																								T	T			T	T	S															T	T	T
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	K	A	Q	I	H	Q	F	R	E	D	S	L	D	S	V	L	F	L	K	K	I	D	R	C	W	Q	N	H	C	R	Q	M	I	M	I	R	S	I	F	L	F	L	D	R	T	Y	V	L	Q	N	S	M	L	P	S	I	W	D
Query Conservation
Alig confidence																			.																																					.
Template Conservation																			.																																					.
Template Sequence		H	L	I	N	K	V	R	E	D	V	L	N	S	L	N	N	N	.	F	L	Q	T	L	N	Q	A	W	N	D	H	Q	T	A	X	V	X	I	R	D	I	L	X	Y	X	D	R	V	Y	V	Q	Q	N	N	V	.	E	N	V	Y	N
Template Known Secondary structure						T							T	T	S	S	S	S	.																							T							T	T	T	T	T	T		.
Template Predicted Secondary structure																			.																																					.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.						.	.	.
Predicted Secondary structure																																																						.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.
Query Sequence		M	G	L	E	L	F	R	A	H	I	I	S	D	Q	K	V	Q	T	K	T	I	D	G	I	L	L	L	I	E	R	E	R	N	G	E	A	I	D	R	S	L	L	R	S	L	L	S	M	L	S	D	L	.	.	.	.	.	Q	I	Y
Query Conservation																																																						.	.	.	.	.
Alig confidence																																																						.	.	.	.	.
Template Conservation
Template Sequence		L	G	L	I	I	F	R	D	Q	V	V	R	Y	G	C	I	R	D	H	L	R	Q	T	L	L	D	X	I	A	R	E	R	K	G	E	V	V	D	R	G	A	I	R	N	A	C	Q	X	L	X	I	L	G	L	E	G	R	S	V	Y
Template Known Secondary structure											T	T	S	S																				T	T																		T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	D	S	F	E	Q	Q	F	L	Q	E	T	N	R	L	Y	A	A	E	G	Q	K	L	M	Q	E	R	E	V	P	E	Y	L	H	H	V	N	K	R	L	E	E	E	A	D	R	L	I	T	Y	L	D	Q	T	T	Q	K	S	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	E	D	F	E	A	P	F	L	E	X	S	A	E	F	F	Q	X	E	S	Q	K	F	L	A	E	N	S	A	S	V	Y	I	K	K	V	E	A	R	I	N	E	E	I	E	R	V	X	H	C	L	D	K	S	T	E	E	P	I	V
Template Known Secondary structure					T																					T	T																								T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.				.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.
Predicted Secondary structure																		.	.	.
Query SS confidence																		.	.	.
Query Sequence		A	S	V	E	K	Q	L	L	G	E	H	L	T	A	I	L	.	.	.	Q	K	G	L	N	S	L	L	D	E	N	R	I	Q	D	L	S	L	L	Y	Q	L	F	S	R	V	R	G	G	V	Q	V	L	L	Q	Q	W	I	E	Y	I
Query Conservation																		.	.	.
Alig confidence																		.	.	.
Template Conservation
Template Sequence		K	V	V	E	R	E	L	I	S	K	H	X	K	T	I	V	E	X	E	N	S	G	L	V	H	X	L	K	N	G	K	T	E	D	L	G	C	X	Y	K	L	F	S	R	V	P	N	G	L	K	T	X	C	E	C	X	S	S	Y	L
Template Known Secondary structure									T	G	G	G								T	T	T	S								T													T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		556	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		322	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D