Job Description A2A432 Confidence 100.00% Date Tue Jul 30 13:09:03 BST 2013 Rank 4 Aligned Residues 357 % Identity 32% Template c3dplC_ PDB info PDB header:ligase Chain: C: PDB Molecule:cullin-5; PDBTitle: structural insights into nedd8 activation of cullin-ring2 ligases: conformational control of conjugation. Resolution 2.60 Å Model Dimensions (Å) X:56.277 Y:81.424 Z:59.818

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		613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.			.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670
Predicted Secondary structure																					.	.
Query SS confidence																					.	.
Query Sequence		P	N	K	P	A	E	L	I	A	K	Y	V	D	S	K	L	R	A	G	.	.	N	K	E	A	T	D	E	E	L	E	K	M	L	D	K	I	M	I	I	F	R	F	I	Y	G	K	D	V	F	E	A	F	Y	K	K	D	L	A	K
Query Conservation																					.	.
Alig confidence																					.	.
Template Conservation
Template Sequence		E	S	K	C	P	E	E	L	A	N	Y	C	D	M	L	L	R	K	T	P	L	S	K	K	L	T	S	E	E	I	E	A	K	L	K	E	V	L	K	K	L	K	Y	V	Q	N	K	D	V	F	M	R	Y	H	K	A	H	L	T	R
Template Known Secondary structure					S													B	S	S					T	S														G	G	G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
		671	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.		.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		R	L	L	V	G	K	S	A	S	V	D	A	E	K	S	M	L	S	K	L	K	H	.	E	C	G	A	A	F	T	S	K	L	E	G	M	F	K	D	M	E	L	S	K	D	I	M	I	Q	F	K	Q	Y	M	Q	N	Q	N	V	P
Query Conservation																								.
Alig confidence																								.
Template Conservation
Template Sequence		R	L	I	L	D	I	S	A	D	S	E	I	E	E	N	M	V	E	W	L	R	E	V	G	M	P	A	D	Y	V	N	K	L	A	R	M	F	Q	D	I	K	V	S	E	D	L	N	Q	A	F	K	E	M	H	K	N	N	A	L	P
Template Known Secondary structure					T	T		B	S															T	T																														T
Template Predicted Secondary structure
Template SS confidence
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
		730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.		.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		G	N	I	E	L	T	V	N	I	L	T	M	G	Y	W	P	.	T	Y	V	P	M	E	V	H	L	P	P	E	M	V	K	L	Q	E	I	F	K	T	F	Y	L	G	K	H	S	G	R	K	L	Q	W	Q	S	T	L	G	H	C	V
Query Conservation																		.
Alig confidence		.																.
Template Conservation		.
Template Sequence		.	A	D	S	V	N	I	K	I	L	N	A	G	A	W	S	R	S	S	E	K	V	F	V	S	L	P	T	E	L	E	D	L	I	P	E	V	E	E	F	Y	K	K	N	H	S	G	R	K	L	H	W	H	H	L	M	S	N	G	I
Template Known Secondary structure		.	G	G	G															S													T	T										T	T	S	S	S							G	G	G
Template Predicted Secondary structure		.
Template SS confidence
			523	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.
		789	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.			.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		L	K	A	E	F	K	E	G	K	K	E	L	Q	V	S	L	F	Q	T	M	V	L	L	M	F	N	E	G	E	.	.	E	F	S	L	E	E	I	K	H	A	T	G	I	E	D	G	E	L	R	R	T	L	Q	S	L	A	C	G	K
Query Conservation																															.	.
Alig confidence																															.	.
Template Conservation
Template Sequence		I	T	F	K	N	E	V	G	Q	Y	D	L	E	V	T	T	F	Q	L	A	V	L	F	A	W	N	Q	R	P	R	E	K	I	S	F	E	N	L	K	L	A	T	E	L	P	D	A	E	L	R	R	T	L	W	S	L	V	A	F	P
Template Known Secondary structure							S	S																G	G	G	T	T		T	T																														T
Template Predicted Secondary structure
Template SS confidence
		582	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.
		847	.	.	850	.							.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.								.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.
Predicted Secondary structure							.	.	.	.	.	.																											.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.																											.	.	.	.	.	.	.
Query Sequence		A	R	V	L	A	.	.	.	.	.	.	K	N	P	K	G	K	D	I	E	D	G	D	K	F	I	C	N	D	D	F	K	H	K	L	F	R	.	.	.	.	.	.	.	I	K	I	N	Q	I	Q	M	K	E	T	V	E	E	Q	A
Query Conservation							.	.	.	.	.	.																											.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																											.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	K	R	Q	V	L	L	Y	E	P	Q	V	N	S	P	K	D	F	T	E	G	T	L	F	S	V	N	Q	E	F	S	L	I	K	N	A	K	V	Q	K	R	G	K	I	N	L	I	G	R	L	Q	L	T	T	E	R	M	R	E
Template Known Secondary structure		T		S	S		S				S	S			S	S	G	G	G			T	T							T	T					S	S	S	S			S								T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		642	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.
		894	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.			.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		S	T	T	E	R	V	F	Q	D	R	Q	Y	Q	I	D	A	A	I	V	R	I	M	K	M	R	K	T	L	S	H	N	L	L	V	S	E	V	Y	N	Q	L	.	.	K	F	P	V	K	P	A	D	L	K	K	R	I	E	S	L	I
Query Conservation																																											.	.
Alig confidence																																											.	.
Template Conservation
Template Sequence		E	E	N	E	G	I	V	Q	L	R	I	L	R	T	Q	E	A	I	I	Q	I	M	K	M	R	K	K	I	S	N	A	Q	L	Q	T	E	L	V	E	I	L	K	N	M	F	L	P	Q	K	K	M	I	K	E	Q	I	E	W	L	I
Template Known Secondary structure																								T	T	S	S															T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		702	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.
		952	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	D	Y	M	E	R	D	K	E	N	P	N	Q	Y	N	Y	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	H	K	Y	I	R	R	D	E	S	D	I	N	T	F	I	Y	M	A
Template Known Secondary structure			T	T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		762	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D