Job Description A2A432 Confidence 100.00% Date Tue Jul 30 13:09:03 BST 2013 Rank 8 Aligned Residues 339 % Identity 21% Template c2wzkA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:cullin-5; PDBTitle: structure of the cul5 n-terminal domain at 2.05a resolution. Resolution 2.05 Å Model Dimensions (Å) X:117.516 Y:58.207 Z:41.853

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.			.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure																						.																		.	.
Query SS confidence																						.																		.	.
Query Sequence		T	D	E	T	W	Q	K	L	K	E	A	V	E	A	I	Q	N	S	T	S	.	I	K	Y	N	L	E	E	L	Y	Q	A	V	E	N	L	C	S	.	.	H	K	I	S	A	N	L	Y	K	Q	L	R	Q	I	C	E	D	H	I	K
Query Conservation																						.																		.	.
Alig confidence																						.																		.	.
Template Conservation
Template Sequence		F	E	D	K	W	D	F	M	H	P	I	V	L	K	L	L	R	Q	E	S	V	T	K	Q	Q	W	F	D	L	F	S	D	V	H	A	V	C	L	W	D	D	K	G	S	S	K	I	H	Q	A	L	K	E	D	I	L	E	F	I	K
Template Known Secondary structure																			T																							T	T
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	I	H	Q	F	R	E	D	S	L	D	S	V	L	F	L	K	K	I	D	R	C	W	Q	N	H	C	R	Q	M	I	M	I	R	S	I	F	L	F	L	D	R	T	Y	V	L	Q	N	S	M	L	P	S	I	W	D	M	G	L
Query Conservation
Alig confidence																.																																					.
Template Conservation																.																																					.
Template Sequence		Q	A	Q	A	R	V	L	S	H	Q	D	D	T	A	.	L	L	K	A	Y	I	V	E	W	R	K	F	F	T	Q	C	D	I	L	P	K	P	F	C	Q	L	E	V	T	L	L	G	K	M	E	D	.	S	I	V	R	K	L	M	L
Template Known Secondary structure									T			S				.																T	T	T	T	T	G	G	G					T	T	S	T	T			T	T	.
Template Predicted Secondary structure																.																																					.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.									.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.
Query Sequence		E	L	F	R	A	H	I	I	S	D	Q	K	V	Q	T	K	T	I	D	G	I	L	L	L	I	E	R	E	R	N	G	E	A	I	D	R	S	L	L	R	S	L	L	S	M	L	S	D	L	.	.	.	.	.	.	.	.	Q	I	Y
Query Conservation																																																			.	.	.	.	.	.	.	.
Alig confidence										.	.																																								.	.	.	.	.	.	.	.
Template Conservation										.	.
Template Sequence		D	T	W	N	E	S	I	F	.	.	S	N	I	K	N	R	L	Q	D	S	A	M	K	L	V	H	A	E	R	L	G	E	A	F	D	S	Q	L	V	I	G	V	R	E	S	Y	V	N	L	C	S	N	P	E	D	K	L	Q	I	Y
Template Known Secondary structure								T		.	.																				T	T					T													S				S	S		T	T
Template Predicted Secondary structure										.	.
Template SS confidence
		141	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.					.	.	.
Predicted Secondary structure																																																							.	.	.	.
Query SS confidence																																																							.	.	.	.
Query Sequence		Q	D	S	F	E	Q	Q	F	L	Q	E	T	N	R	L	Y	A	A	E	G	Q	K	L	M	Q	E	R	E	V	P	E	Y	L	H	H	V	N	K	R	L	E	E	E	A	D	R	L	I	T	Y	L	D	Q	.	.	.	.	T	T	Q
Query Conservation																																																							.	.	.	.
Alig confidence																																																							.	.	.	.
Template Conservation
Template Sequence		R	D	N	F	E	K	A	Y	L	D	S	T	E	R	F	Y	R	T	Q	A	P	S	Y	L	Q	Q	N	G	V	Q	N	Y	M	K	Y	A	D	A	K	L	K	E	E	E	K	R	A	L	R	Y	L	E	T	R	R	E	C	N	S	V
Template Known Secondary structure				T																																																S			T	T			S
Template Predicted Secondary structure
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	L	I	A	S	V	E	K	Q	L	L	G	E	H	L	T	A	I	L	Q	K	G	L	N	S	L	L	D	E	N	R	I	Q	D	L	S	L	L	Y	Q	L	F	S	R	V	R	G	G	V	Q	V	L	L	Q	Q	W	I	E	Y
Query Conservation
Alig confidence																			.
Template Conservation																			.
Template Sequence		E	A	L	M	E	C	C	V	N	A	L	V	T	S	F	K	E	.	T	I	L	A	E	C	Q	G	M	I	K	R	N	E	T	E	K	L	H	L	M	F	S	L	M	D	K	V	P	N	G	I	E	P	M	L	K	D	L	E	E	H
Template Known Secondary structure													T	G	G	G			.				T	T							T	T													T	T	S	T	T		S
Template Predicted Secondary structure																			.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		555	.	.	.	.	560	.	.	.	.	.	.	.	.	.						570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.
Query SS confidence																	.	.	.	.	.
Query Sequence		I	K	A	F	G	S	T	I	V	I	N	P	E	K	D	.	.	.	.	.	K	T	M	V	Q	E	L	L	D	F	K	D	K	V	D	H	I	I	D	T	C	F	L	K	N	E	K	F	I	N	A	M	K	E	A	F	E	T	F	I
Query Conservation																	.	.	.	.	.
Alig confidence																	.	.	.	.	.
Template Conservation
Template Sequence		I	I	S	A	G	L	A	D	M	V	A	A	A	E	T	I	T	T	D	S	E	K	Y	R	E	Q	L	D	T	L	F	N	R	F	S	K	L	V	K	E	A	F	Q	D	D	P	R	F	L	T	A	R	D	K	A	Y	K	A	V	V
Template Known Secondary structure														G	G	G	T	T	T																									T	T
Template Predicted Secondary structure
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		610	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	K	R	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	D	A	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D