Job Description A2A432 Confidence 100.00% Date Tue Jul 30 13:09:03 BST 2013 Rank 3 Aligned Residues 689 % Identity 33% Template c1u6gA_ PDB info PDB header:ligase Chain: A: PDB Molecule:cullin homolog 1; PDBTitle: crystal structure of the cand1-cul1-roc1 complex Resolution 3.10 Å Model Dimensions (Å) X:114.199 Y:146.437 Z:86.794

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		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		T	D	E	T	W	Q	K	L	K	E	A	V	E	A	I	Q	N	S	T	S	I	K	Y	N	.	L	E	E	L	Y	Q	A	V	E	N	L	C	S	H	K	I	S	A	N	L	Y	K	Q	L	R	Q	I	C	E	D	H	I	K	A	Q
Query Conservation																										.
Alig confidence																										.													.
Template Conservation																																							.
Template Sequence		L	D	Q	I	W	D	D	L	R	A	G	I	Q	Q	V	Y	T	R	Q	S	M	A	K	S	R	Y	M	E	L	Y	T	H	V	Y	N	Y	C	.	T	S	V	G	L	E	L	Y	K	R	L	K	E	F	L	K	N	Y	L	T	N	L
Template Known Secondary structure																	T	T	T																				.				T	T
Template Predicted Secondary structure																																							.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.		.	380	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		I	H	Q	F	R	E	D	S	L	D	S	V	L	F	L	K	K	I	D	R	C	W	Q	N	H	C	R	Q	M	I	M	I	R	S	I	F	L	F	L	D	R	T	Y	V	L	Q	N	S	M	L	.	P	S	I	W	D	M	G	L	E
Query Conservation																																																				.
Alig confidence													.	.																																						.
Template Conservation													.	.
Template Sequence		L	K	D	G	E	D	L	M	D	E	S	.	.	V	L	K	F	Y	T	Q	Q	W	E	D	Y	R	F	S	S	K	V	L	N	G	I	C	A	Y	L	N	R	H	W	V	R	R	E	C	K	G	I	Y	E	I	Y	S	L	A	L	V
Template Known Secondary structure				T	T	T	T			S	S		.	.																							T						T	T	T
Template Predicted Secondary structure													.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.							.	.	440	.
Predicted Secondary structure																																																				.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.
Query Sequence		L	F	R	A	H	I	I	S	D	Q	K	V	Q	T	K	T	I	D	G	I	L	L	L	I	E	R	E	R	N	G	E	A	I	D	R	S	L	L	R	S	L	L	S	M	L	S	D	L	Q	I	.	.	.	.	.	.	Y	Q	D	S
Query Conservation																																																				.	.	.	.	.	.
Alig confidence									.	.																																										.	.	.	.	.	.
Template Conservation									.	.
Template Sequence		T	W	R	D	C	L	F	.	.	R	P	L	N	K	Q	V	T	N	A	V	L	K	L	I	E	K	E	R	N	G	E	T	I	N	T	R	L	I	S	G	V	V	Q	S	Y	V	E	L	G	L	G	P	T	L	T	V	Y	K	E	S
Template Known Secondary structure								T	.	.	T	T	G	G	G	T														T	T					T													T
Template Predicted Secondary structure									.	.
Template SS confidence
		166	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	Q	Q	F	L	Q	E	T	N	R	L	Y	A	A	E	G	Q	K	L	M	Q	E	R	E	V	P	E	Y	L	H	H	V	N	K	R	L	E	E	E	A	D	R	L	I	T	Y	L	D	Q	T	T	Q	K	S	L	I	A	S	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	E	S	Q	F	L	A	D	T	E	R	F	Y	T	R	E	S	T	E	F	L	Q	Q	N	P	V	T	E	Y	M	K	K	A	E	A	R	L	L	E	E	Q	R	R	V	Q	V	Y	L	H	E	S	T	Q	D	E	L	A	R	K	C
Template Known Secondary structure		T																							S																						T	T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		502	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	Q	L	L	G	E	H	L	T	A	I	L	Q	K	G	L	N	S	L	L	D	E	N	R	I	Q	D	L	S	L	L	Y	Q	L	F	S	R	V	R	G	G	V	Q	V	L	L	Q	Q	W	I	E	Y	I	K	A	F	G	S	T
Query Conservation
Alig confidence												.
Template Conservation												.
Template Sequence		E	Q	V	L	I	E	K	H	L	E	.	I	F	H	T	E	F	Q	N	L	L	D	A	D	K	N	E	D	L	G	R	M	Y	N	L	V	S	R	I	Q	D	G	L	G	E	L	K	K	L	L	E	T	H	I	H	N	Q	G	L	A
Template Known Secondary structure						T	T	T	S			.												S			T	T										T	T	S	T	T	T	T
Template Predicted Secondary structure												.
Template SS confidence
		291	.	.	.	.	.	.	.	.	300		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		562	.	.	.	.	.	.	.	570						.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.
Predicted Secondary structure											.	.	.	.	.																																											.	.	.	.
Query SS confidence											.	.	.	.	.																																											.	.	.	.
Query Sequence		I	V	I	N	P	E	K	D	K	.	.	.	.	.	T	M	V	Q	E	L	L	D	F	K	D	K	V	D	H	I	I	D	T	C	F	L	K	N	E	K	F	I	N	A	M	K	E	A	F	E	T	F	I	N	K	R	.	.	.	.
Query Conservation											.	.	.	.	.																																											.	.	.	.
Alig confidence											.	.	.	.	.																																											.	.	.	.
Template Conservation
Template Sequence		A	I	E	K	C	G	E	A	A	L	N	D	P	K	M	Y	V	Q	T	V	L	D	V	H	K	K	Y	N	A	L	V	M	S	A	F	N	N	D	A	G	F	V	A	A	L	D	K	A	C	G	R	F	I	N	N	N	A	V	T	K
Template Known Secondary structure					T	T	T	T																										T	T	T	T	T																		S	S
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
						613	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	P	N	K	P	A	E	L	I	A	K	Y	V	D	S	K	L	R	A	G	N	K	E	A	T	D	E	E	L	E	K	M	L	D	K	I	M	I	I	F	R	F	I	Y	G	K	D	V	F	E	A	F	Y	K	K	D	L
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																			.	.	.	.	.
Template Conservation																								.	.	.	.	.
Template Sequence		M	A	Q	S	S	S	K	S	P	E	L	L	A	R	Y	C	D	S	L	L	K	K	.	.	.	.	.	E	E	A	E	L	E	D	T	L	N	Q	V	M	V	V	F	K	Y	I	E	D	K	D	V	F	Q	K	F	Y	A	K	M	L
Template Known Secondary structure			T	T	S	T	T																	.	.	.	.	.																				S
Template Predicted Secondary structure																								.	.	.	.	.
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.						.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		669	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	R	L	L	V	G	K	S	A	S	V	D	A	E	K	S	M	L	S	K	L	K	H	E	C	G	A	A	F	T	S	K	L	E	G	M	F	K	D	M	E	L	S	K	D	I	M	I	Q	F	K	Q	Y	M	Q	N	Q	N	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	R	L	V	H	Q	N	S	A	S	D	D	A	E	A	S	M	I	S	K	L	K	Q	A	C	G	F	E	Y	T	S	K	L	Q	R	M	F	Q	D	I	G	V	S	K	D	L	N	E	Q	F	K	K	H	L	T	N	S	E	P
Template Known Secondary structure							S	S																			S		S																													T	S
Template Predicted Secondary structure
Template SS confidence
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
		729	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	N	I	E	L	T	V	N	I	L	T	M	G	Y	W	P	T	Y	V	P	M	E	V	H	L	P	P	E	M	V	K	L	Q	E	I	F	K	T	F	Y	L	G	K	H	S	G	R	K	L	Q	W	Q	S	T	L	G	H	C	V
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		L	.	D	L	D	F	S	I	Q	V	L	S	S	G	S	W	P	F	Q	Q	S	C	T	F	A	L	P	S	E	L	E	R	S	Y	Q	R	F	T	A	F	Y	A	S	R	H	S	G	R	K	L	T	W	L	Y	Q	L	S	K	G	E
Template Known Secondary structure			.	S	S									G	G	G							S																								T	T							G	G	G
Template Predicted Secondary structure			.
Template SS confidence
		530		.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.
		789	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	A	E	F	K	E	G	K	K	E	L	Q	V	S	L	F	Q	T	M	V	L	L	M	F	N	E	G	E	E	F	S	L	E	E	I	K	H	A	T	G	I	E	D	G	E	L	R	R	T	L	Q	S	L	A	C	G	K	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	T	N	C	F	K	N	R	Y	T	L	Q	A	S	T	F	Q	M	A	I	L	L	Q	Y	N	T	E	D	A	Y	T	V	Q	Q	L	T	D	S	T	Q	I	K	M	D	I	L	A	Q	V	L	Q	I	L	L	K	S	K	L	L
Template Known Secondary structure					T	T	S	S	S															G	G	G	G	T		S											T																		T	S
Template Predicted Secondary structure
Template SS confidence
		589	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.
		849	850	.	.	.	.	.	.	.				.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		V	L	A	K	N	P	K	G	K	.	.	.	D	I	E	D	G	D	K	F	I	C	N	D	D	F	K	H	K	L	F	R	I	K	I	N	Q	I	Q	M	K	E	T	V	E	E	Q	A	S	T	T	E	R	V	F	Q	D	R	Q	Y
Query Conservation											.	.	.
Alig confidence											.	.	.
Template Conservation
Template Sequence		V	L	E	D	E	N	A	N	V	D	E	V	E	L	K	P	D	T	L	I	K	L	Y	L	G	Y	K	N	K	K	L	R	V	N	I	N	V	P	M	K	T	E	Q	K	Q	E	Q	E	T	T	H	K	N	I	E	E	D	R	K	L
Template Known Secondary structure				S	S	S	S			G	G	G					T	T	S							S				S	S	S
Template Predicted Secondary structure
Template SS confidence
		649	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.
		906	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.			.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		Q	I	D	A	A	I	V	R	I	M	K	M	R	K	T	L	S	H	N	L	L	V	S	E	V	Y	N	Q	L	.	.	K	F	P	V	K	P	A	D	L	K	K	R	I	E	S	L	I	D	R	D	Y	M	E	R	D	K	E	N	P
Query Conservation																															.	.
Alig confidence																															.	.
Template Conservation
Template Sequence		L	I	Q	A	A	I	V	R	I	M	K	M	R	K	V	L	K	H	Q	Q	L	L	G	E	V	L	T	Q	L	S	S	R	F	K	P	R	V	P	V	I	K	K	C	I	D	I	L	I	E	K	E	Y	L	E	R	V	D	G	E	K
Template Known Secondary structure												T	S	S	S																T	T	T																		T	T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		709	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.
		964	.	.	.	.	.	970
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	Y	N	Y	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	T	Y	S	Y	L	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		769	770	.	.	.	.	.