Job Description A2A432 Confidence 86.01% Date Tue Jul 30 13:09:03 BST 2013 Rank 43 Aligned Residues 147 % Identity 18% Template c1p4xA_ PDB info PDB header:transcription Chain: A: PDB Molecule:staphylococcal accessory regulator a homologue; PDBTitle: crystal structure of sars protein from staphylococcus aureus Resolution 2.20 Å

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		802	.	.	.	.	.	.	.	810	.	.	.			.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		V	S	L	F	Q	T	M	V	L	L	M	F	.	.	N	E	G	E	E	F	S	L	E	E	I	K	H	A	T	G	I	E	D	G	E	L	R	R	T	L	Q	S	L	A	C	G	K	A	R	V	L	A	K	N	P	K	G	K	D	I
Query Conservation														.	.
Alig confidence														.	.																															.	.														.
Template Conservation																																														.	.														.
Template Sequence		M	T	I	K	E	F	I	L	L	T	Y	L	F	H	Q	Q	E	N	T	L	P	F	K	K	I	V	S	D	L	C	Y	K	Q	S	D	L	V	Q	H	I	K	V	L	V	.	.	K	H	S	Y	I	S	K	V	R	S	K	I	D	.
Template Known Secondary structure		S													S		S		S											S	S	S		G	G	G	T									.	.		T	T	S							S	S	S	.
Template Predicted Secondary structure																																														.	.														.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.	.	.	.	.	.	.
		860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900																		.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	D	G	D	K	F	I	C	N	D	D	F	K	H	K	L	F	R	I	K	I	N	Q	I	Q	M	K	E	T	V	E	E	Q	A	S	T	T	E	R	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	D
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	N	T	Y	I	S	I	S	E	E	Q	R	E	K	I	A	E	R	V	T	L	F	D	Q	I	I	K	Q	F	N	L	A	D	Q	S	E	S	Q	M	I	P	K	D	S	K	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S																															T	T			S	S		S			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		903	.	.	.	.	.	.	910	.			.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.												.	.	.			.	.	.	.	.	940	.	.	.	.	.	.	.
Predicted Secondary structure											.	.																					.	.	.	.	.	.	.	.	.	.	.				.	.
Query SS confidence											.	.																					.	.	.	.	.	.	.	.	.	.	.				.	.
Query Sequence		R	Q	Y	Q	I	D	A	A	I	.	.	V	R	I	M	K	M	R	K	T	L	S	H	N	L	L	V	S	E	V	Y	.	.	.	.	.	.	.	.	.	.	.	N	Q	L	.	.	K	F	P	V	K	P	A	D	L	K	K	R	I
Query Conservation											.	.																					.	.	.	.	.	.	.	.	.	.	.				.	.
Alig confidence											.	.																					.	.	.	.	.	.	.	.	.	.	.				.	.
Template Conservation
Template Sequence		F	L	N	L	M	M	Y	T	M	Y	F	K	N	I	I	K	K	H	L	T	L	S	F	V	E	F	T	I	L	A	I	I	T	S	Q	N	K	N	I	V	L	L	K	D	L	I	E	T	I	H	H	K	Y	P	Q	T	V	R	A	L
Template Known Secondary structure																					S	S													T	T	T	T												S	S	S
Template Predicted Secondary structure
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		948	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	S	L	I	D	R	D	Y	M	E	R	D	K	E	N	P	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	N	L	K	K	Q	G	Y	L	I	K	E	R	S	T	E	D
Template Known Secondary structure								T	S	S						S	S	S
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D