Job Description A2A432 Confidence 100.00% Date Tue Jul 30 13:09:03 BST 2013 Rank 5 Aligned Residues 361 % Identity 37% Template c1ldkB_ PDB info PDB header:ligase Chain: B: PDB Molecule:cullin homolog; PDBTitle: structure of the cul1-rbx1-skp1-f boxskp2 scf ubiquitin2 ligase complex Resolution 3.10 Å Model Dimensions (Å) X:58.455 Y:83.481 Z:51.670

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		609	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	K	R	P	N	K	P	A	E	L	I	A	K	Y	V	D	S	K	L	R	A	G	N	K	E	A	T	D	E	E	L	E	K	M	L	D	K	I	M	I	I	F	R	F	I	Y	G	K	D	V	F	E	A	F	Y	K	K	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	A	Q	S	S	S	K	S	P	E	L	L	A	R	Y	C	D	S	L	L	K	K	S	S	K	N	P	E	E	A	E	L	E	D	T	L	N	Q	V	M	V	V	F	K	Y	I	E	D	K	D	V	F	Q	K	F	Y	A	K	M	L
Template Known Secondary structure				S		S	S															S			S	S																			T	T		T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
		669	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	R	L	L	V	G	K	S	A	S	V	D	A	E	K	S	M	L	S	K	L	K	H	E	C	G	A	A	F	T	S	K	L	E	G	M	F	K	D	M	E	L	S	K	D	I	M	I	Q	F	K	Q	Y	M	Q	N	Q	N	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	R	L	V	H	Q	N	S	A	S	D	D	A	E	A	S	M	I	S	K	L	K	Q	A	C	G	F	E	Y	T	S	K	L	Q	R	M	F	Q	D	I	G	V	S	K	D	L	N	E	Q	F	K	K	H	L	T	N	S	E	P
Template Known Secondary structure							S				S														T	T	S		S	S																												T	T
Template Predicted Secondary structure
Template SS confidence
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
		729	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	N	I	E	L	T	V	N	I	L	T	M	G	Y	W	P	T	Y	V	P	M	E	V	H	L	P	P	E	M	V	K	L	Q	E	I	F	K	T	F	Y	L	G	K	H	S	G	R	K	L	Q	W	Q	S	T	L	G	H	C	V
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		L	.	D	L	D	F	S	I	Q	V	L	S	S	G	S	W	P	F	Q	Q	S	C	T	F	A	L	P	S	E	L	E	R	S	Y	Q	R	F	T	A	F	Y	A	S	R	H	S	G	R	K	L	T	W	L	Y	Q	L	S	K	G	E
Template Known Secondary structure			.		S									T	T	T							S						S	S	S	T	T	T										T	T		T	T							S	S	S
Template Predicted Secondary structure			.
Template SS confidence
		531		.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.
		789	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	A	E	F	K	E	G	K	K	E	L	Q	V	S	L	F	Q	T	M	V	L	L	M	F	N	E	G	E	E	F	S	L	E	E	I	K	H	A	T	G	I	E	D	G	E	L	R	R	T	L	Q	S	L	A	C	G	K	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	T	N	C	F	K	N	R	Y	T	L	Q	A	S	T	F	Q	M	A	I	L	L	Q	Y	N	T	E	D	A	Y	T	V	Q	Q	L	T	D	S	T	Q	I	K	M	D	I	L	A	Q	V	L	Q	I	L	L	K	S	K	L	L
Template Known Secondary structure					T	T	S	S	S														T	T	T	T	S	S	S	S									T	T	T	T																T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.
		849	850	.	.	.	.				.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.
Predicted Secondary structure								.	.	.
Query SS confidence								.	.	.
Query Sequence		V	L	A	K	N	P	.	.	.	K	G	K	D	I	E	D	G	D	K	F	I	C	N	D	D	F	K	H	K	L	F	R	I	K	I	N	Q	I	Q	M	K	E	T	V	E	E	Q	A	S	T	T	E	R	V	F	Q	D	R	Q	Y
Query Conservation								.	.	.
Alig confidence								.	.	.
Template Conservation
Template Sequence		V	L	E	D	E	N	A	N	V	D	E	V	E	L	K	P	D	T	L	I	K	L	Y	L	G	Y	K	N	K	K	L	R	V	N	I	N	V	P	M	K	T	E	Q	K	Q	E	Q	E	T	T	H	K	N	I	E	E	D	R	K	L
Template Known Secondary structure				S	S	S				T	T	T					T	T	S						S	S				S	S	S	S								S	T											T
Template Predicted Secondary structure
Template SS confidence
		650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.
		906	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.			.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		Q	I	D	A	A	I	V	R	I	M	K	M	R	K	T	L	S	H	N	L	L	V	S	E	V	Y	N	Q	L	.	.	K	F	P	V	K	P	A	D	L	K	K	R	I	E	S	L	I	D	R	D	Y	M	E	R	D	K	E	N	P
Query Conservation																															.	.
Alig confidence																															.	.
Template Conservation
Template Sequence		L	I	Q	A	A	I	V	R	I	M	K	M	R	K	V	L	K	H	Q	Q	L	L	G	E	V	L	T	Q	L	S	S	R	F	K	P	R	V	P	V	I	K	K	C	I	D	I	L	I	E	K	E	Y	L	E	R	V	D	G	E	K
Template Known Secondary structure			T	S	S	T	T					T	T		S	S		B					T	T	T	T	T	T	T	T		T	T					S	S	T	T	S	S	T					G	G	G	T						T	T		S
Template Predicted Secondary structure
Template SS confidence
		710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.
		964	.	.	.	.	.	970
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	Y	N	Y	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	T	Y	S	Y	L	A
Template Known Secondary structure		S	B
Template Predicted Secondary structure
Template SS confidence
		770	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D