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Job DescriptionP14234
Confidence100.00%DateWed Jul 10 14:36:25 BST 2013
Rank53Aligned Residues246
% Identity22%Templatec3soaA_
PDB info PDB header:transferase/transferase inhibitorChain: A: PDB Molecule:calcium/calmodulin-dependent protein kinase type ii subunit PDBTitle: full-length human camkii
Resolution3.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   248.250.........260.........270.........280..... ....290.........300....
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Query Sequence  RNSIALERRLGTGCFGDVWLGTWNCSTKVAVKTLKPGT. . . MSPKAFLEEAQIMKLLRHD
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Template Sequence  TEEYQLFEELGKGSVVRRCVKVL. AGQEYAAMIINTKKLSARDHQKLEREARICRLLKHP
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TT.TTS
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BT
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   10.........20.........30.. .......40.........50.........60........
 
   305....310..... ....320.........330.........340.........350.........360...
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Query Sequence  KLVQLYAVVSE. EPIYIVTEFMCYGSLLDFLKDREGQNLMLPHLVDMAAQVAEGMAYMER
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Template Sequence  NIVRLHDSISEEGHHYLIFDLVTGGELFEDIVARE. . YYSEADASHCIQQILEAVLHCHQ
Template Known Secondary structure  TB


SS


B

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   71........80.........90.........100..... ....110.........120........
 
   364.....370.........380... ......390.........400.........410.........420
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Query Sequence  MNYIHRDLRAANILVGEYLI. . . CKIADFGLARLIEDNEYNPQQGTKFPIKWTAPEAALF
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Template Sequence  MGVVHRNLKPENLLLASKLKGAAVKLADFGLAIE. VEGEQQAWFGFAGTPGYLSPEVLRK
Template Known Secondary structure  TT
B



SSTTSBSSTT




SS
B
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TT

B


S
S
GGG

TT
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   129130.........140.........150.........160.. .......170.........180.......
 
   421........430.........440.........450.........460.... .....470.......
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Query Sequence  GRFTVKSDVWSFGILLTELITKGRVPYPGMNNREVLEQVEHGYH. . . MPCPPGCPASLYE
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Template Sequence  DPYGKPVDLWACGVILYILLV. GYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKD
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B
T.SS
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TTTTTTS
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   188.190.........200........ .210.........220.........230.........240......
 
   478.480.........490........
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Query Sequence  VMEQAWRLDPEERPTFEYLQS
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Template Sequence  LINKMLTINPSKRITAAEALK
Template Known Secondary structure  S
SSTTTS

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   247..250.........260.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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