Job Description P26450 Confidence 100.00% Date Tue Jul 30 13:13:01 BST 2013 Rank 23 Aligned Residues 185 % Identity 22% Template c3fk2B_ PDB info PDB header:signaling protein, hydrolase activator Chain: B: PDB Molecule:glucocorticoid receptor dna-binding factor 1; PDBTitle: crystal structure of the rhogap domain of human2 glucocorticoid receptor dna-binding factor 1 Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		E	Q	Q	A	L	P	L	P	D	L	A	E	Q	F	A	P	P	D	V	A	P	P	L	L	I	K	L	L	E	A	I	E	K	K	G	L	E	C	S	T	L	Y	R	T	Q	S	S	.	S	N	P	A	E	L	R	Q	L	L	D	C
Query Conservation																																																	.
Alig confidence																																																	.
Template Conservation
Template Sequence		W	E	S	N	Y	F	G	V	P	L	T	T	V	V	T	P	E	K	P	I	P	I	F	I	E	R	C	I	E	Y	I	E	A	T	G	L	S	T	E	G	I	Y	R	V	S	G	N	K	S	E	M	E	S	L	Q	R	Q	F	D	Q
Template Known Secondary structure					S	S	T	T	S		G	G	G	G			S	S	S		S																T	T	S	T	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		1242	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.
		168	.	170	.	.		.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		D	A	A	S	V	.	D	L	E	M	I	D	V	H	V	L	A	D	A	F	K	R	Y	L	A	D	L	P	N	P	V	I	P	V	A	V	Y	N	E	M	M	S	L	A	Q	E	L	Q	S	P	E	D	C	I	Q	L	L	K	K	L
Query Conservation							.
Alig confidence							.																																																						.
Template Conservation																																																													.
Template Sequence		D	H	N	L	D	L	A	E	K	D	F	T	V	N	T	V	A	G	A	M	K	S	F	F	S	E	L	P	D	P	L	V	P	Y	N	M	Q	I	D	L	V	E	A	H	K	I	N	D	R	E	Q	K	L	H	A	L	K	E	V	.
Template Known Secondary structure			T	T			S	G	G	G	T																	S	S	S		S	S												T	T			S												.
Template Predicted Secondary structure																																																													.
Template SS confidence
		1302	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	L	P	N	I	P	H	Q	C	W	L	T	L	Q	Y	L	L	K	H	F	F	K	L	S	Q	A	S	S	K	N	L	L	N	A	R	V	L	S	E	I	F	S	P	V	L	F	R	F	P	A	A	S	S	D	N	T	E	H	L
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	L	K	K	F	P	K	E	N	H	E	V	F	K	Y	V	I	S	H	L	N	K	V	S	H	N	N	K	V	N	L	M	T	S	E	N	L	S	I	C	F	W	P	T	L	M	R	P	D	M	D	A	L	T	A	T	R	T	Y
Template Known Secondary structure		.	.			T	S																				T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				1361	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	A	I	E	I	L	I	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	T	I	I	E	L	F	I	Q	Q
Template Known Secondary structure											T
Template Predicted Secondary structure
Template SS confidence
		1422	.	.	.	.	.	.	.	1430	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D