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Job DescriptionA0JNU3
Confidence99.89%DateWed Jul 10 14:11:33 BST 2013
Rank29Aligned Residues168
% Identity26%Templatec2fo1E_
PDB info PDB header:gene regulation/signalling protein/dnaChain: E: PDB Molecule:lin-12 protein; PDBTitle: crystal structure of the csl-notch-mastermind ternary2 complex bound to dna
Resolution3.12 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   384.....390.........400...... ...410.........420.........430.........440..
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Query Sequence  MNGSQEADTMKDVLLPGLALAAA. HAGDLDTLQAFVELDRDLNLKDYSGQTPLHVAARRG
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Template Sequence  INASVWXPPXENEESP. . IKLHTEAAGSYAITEPITRESVNII. DPRHNRTVLHWIASNS
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   940.........950..... ....960.........970.........980 .........990......
 
   443......450. ........460.........470.........480
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Query Sequence  HAAVVTMLL. . . . . . . . QRGADVDARNEDGQSPLLLAVRGRHQSVI. . . . . . . . . . . . . .
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Template Sequence  SAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYN
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   1065....1070.........1080.........1090.........1100.........1110.........1120....
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  KSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKL
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TT
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   1125....1130.........1140.........1150.........1160.........1170.........1180....
 
   481........490.........500.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GLLRAAGARLSPQELEDVGTE
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Template Sequence  LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTP
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   1185....1190.........1200.........1210.........1220.........1230.........1240....
 
   502.......510.........520.........530.........540.........550....
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Query Sequence  LCRLASRGDSEGLRAWWQAGADLGQPDYDGHCALQVAEAAGNADVVALLQSFK
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Template Sequence  IXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR
Template Known Secondary structure  T
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   1245....1250.........1260.........1270.........1280.........1290.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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