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Job DescriptionA0JNU3
Confidence99.81%DateWed Jul 10 14:11:33 BST 2013
Rank58Aligned Residues160
% Identity20%Templatec2f37B_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:transient receptor potential cation channel PDBTitle: crystal structure of the ankyrin repeat domain of human2 trpv2
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   395....400.........410.........
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Query Sequence  DVLLPGLALAAAHAGDLDTLQAFVE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  NRFDRDRLFNAVSRGVPEDLAGLPEYLSKTSKYLTDSEYTEGSTGKTCLXKAVLNLKDGV
Template Known Secondary structure  S


T
GGGGTTT

TTSGGGSBTTTTB
T
BTTB
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   72.......80.........90.........100.........110.........120.........130.
 
   420.........430.........440.........450.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . LDRDLNLKDYSGQTPLHVAARRGHAAVVTMLLQRGADVDA
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Template Conservation                                     
  
           

        
Template Sequence  NACILPLLQIDRDSGNPQPLVNAQCTDDYYRGHSALHIAIEKRSLQCVKLLVENGANVHA
Template Known Secondary structure 
TTT
SS
GGG
B

STTTTT
BTT
TT

TT
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   132.......140.........150.........160.........170.........180.........190.
 
   460... ......470.........480.........490...
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Query Sequence  RNED. . . . . . . . . . . . . GQSPLLLAVRGRHQSVIGLLRAAGARLSPQ. . . . . . . . . . . . .
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Template Conservation                       
                                   
  
Template Sequence  RACGRFFQKGQGTCFYFGELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLHA
Template Known Secondary structure 


SGGG
TTSSSS

S
SSTT

SS



TT


TTS

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   192.......200.........210.........220.........230.........240.........250.
 
   494.....500.........510.........520.........530.........540........
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Query Sequence  . . . . . ELEDVGTELCRLASRGDSEGLRAWWQAGADLGQPDYDGHCALQVAEAAGNADVVA
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Template Conservation             
 
  
        
  
       
  
  
 



 

  
   

 
Template Sequence  LVXISDNSAENIALVTSXYDGLLQAGARLCPTVQLEDIRNLQDLTPLKLAAKEGKIEIFR
Template Known Secondary structure 

S
STT

GGG


TTS

TT
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   252.......260.........270.........280.........290.........300.........310.
 
   549550....
Predicted Secondary structure 

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Query Sequence  LLQSFK
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Template Conservation   

 
 
Template Sequence  HILQRE
Template Known Secondary structure  T
Template Predicted Secondary structure 

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   312.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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