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Job DescriptionA0JNU3
Confidence99.73%DateWed Jul 10 14:11:33 BST 2013
Rank74Aligned Residues156
% Identity29%Templatec4b93B_
PDB info PDB header:exocytosisChain: B: PDB Molecule:ankyrin repeat domain-containing protein 27; PDBTitle: complex of vamp7 cytoplasmic domain with 2nd ankyrin repeat2 domain of varp
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   394.....400.........410......... 420.........430.........440.........450.
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Query Sequence  KDVLLPGLALAAAHAGDLDTLQAFVE. . LDRDLNLKDYSGQTPLHVAARRGHAAVVTMLL
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Template Sequence  KDYREVEKLLRAVADGDLEMVRYLLEWTSGLGVNVTSQDGSSPLHVAALHGRADLIPLLL
Template Known Secondary structure 


TT
T





TT


TTS

TT
TT
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   665....670.........680.........690.........700.........710.........720....
 
   452.......460.........470.........480.........490...
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Query Sequence  QRGADVDARNEDGQSPLLLAVRGRHQSVIGLLRAAGARLSPQ. . . . . . . . . . . . . . . . . .
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Template Sequence  KHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHE
Template Known Secondary structure  TT

TT


TT


T
TT

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TT


TT
GG
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   765....770.........780.........790.........800.........810.........820....
 
   494.....500.........510.........520.........530.........
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Query Sequence  . . . . . . . . . . . . . . ELEDVGTELCRLASRGDSEGLRAWWQAGADLGQPDYDGHCALQVAE
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Template Sequence  LVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAE
Template Known Secondary structure  GTT

TT
B
TTS
BTT
TT

S



TTS

SGGGS
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   825....830.........840.........850.........860.........870.........880....
 
   540.........550.
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Query Sequence  AAGNADVVALLQ
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Template Sequence  QNS. . KIMELLQ
Template Known Secondary structure  TT
..TT
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   885.. ..890....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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