Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA0JNU3
DateWed Jul 10 14:11:33 BST 2013
Unique Job IDc827b3bafddfac1b
SequenceMARAMGPERR ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:53.408 Y:48.745 Z:69.416
Model (left) based on template c1zq1B_
Top template information
PDB header:lyase
Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d;
PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi
Confidence and coverage
Confidence:100.0% Coverage: 60%
341 residues ( 60% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
507 residues ( 90%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MARAMGPERRLLAIYTGGTIGMRSEGGVLVPGRGLAAVLKTLHMFHDEEYAQAHSLPEDT
Secondary structure 
SS confidence 
Disorder  ???????
????
?
?????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  LVLPPASPDQRIIYTVLECQPLFDSSDMTITEWVQIAQTIERHYAQYQGFVVIHGTDTMA
Secondary structure 
SS confidence 
Disorder  ??????????
?
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  FAASVLSFMLENLQKPVVLTGAQVPIHALWSDGRENLLGALLMAGQYVIPEVCLFFQNQL
Secondary structure 
SS confidence 
Disorder 
??????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  FRGNRTTKVDARRFAAFCSPNLPPLATVGADVTINRELVRKACGKSHLVVHSSMEPDVGL
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  LRLYPGIPASLVRTFLQPPLKGVVMETFGSGNGPTKPDLLQELRVAAEQGLIIVNCTHCL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  QGAVTSDYASGMAMAGAGIVSGFDMTSEAALAKLSYVLGQPGLSLNDRKKLLAKDLRGEM
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  TLPATDVLLQDGMLGCRVAWLLSMNGSQEADTMKDVLLPGLALAAAHAGDLDTLQAFVEL
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  DRDLNLKDYSGQTPLHVAARRGHAAVVTMLLQRGADVDARNEDGQSPLLLAVRGRHQSVI
Secondary structure 
SS confidence 
Disorder 
?
?
?
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  GLLRAAGARLSPQELEDVGTELCRLASRGDSEGLRAWWQAGADLGQPDYDGHCALQVAEA
Secondary structure 
SS confidence 
Disorder 
???????
?
?
Disorder confidence 
 
   .........550.........560....
Sequence  AGNADVVALLQSFKDSVCAQPQPH
Secondary structure 
SS confidence 
Disorder 
????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered ( 10%)
Alpha helix ( 39%)
Beta strand ( 10%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1zq1 chain B

3D model

Region: 1 - 369
Aligned: 341
Modelled: 345
Confidence: 100.0%
Identity: 29%
PDB header:lyase
Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d;
PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi

Phyre2

PDB 2d6f chain A

3D model

Region: 2 - 369
Aligned: 339
Modelled: 344
Confidence: 100.0%
Identity: 28%
PDB header:ligase/rna
Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d;
PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln)

Phyre2

PDB 2ocd chain A domain 1

3D model

Region: 7 - 362
Aligned: 328
Modelled: 335
Confidence: 100.0%
Identity: 44%
Fold: Glutaminase/Asparaginase
Superfamily: Glutaminase/Asparaginase
Family: Glutaminase/Asparaginase

Phyre2

PDB 2p2d chain A

3D model

Region: 7 - 363
Aligned: 329
Modelled: 336
Confidence: 100.0%
Identity: 47%
PDB header:transferase
Chain: A: PDB Molecule:l-asparaginase i;
PDBTitle: crystal structure and allosteric regulation of the cytoplasmic2 escherichia coli l-asparaginase i

Phyre2

PDB 1zq1 chain A domain 2

3D model

Region: 4 - 365
Aligned: 335
Modelled: 337
Confidence: 100.0%
Identity: 29%
Fold: Glutaminase/Asparaginase
Superfamily: Glutaminase/Asparaginase
Family: Glutaminase/Asparaginase

Phyre2

PDB 1wnf chain A

3D model

Region: 10 - 361
Aligned: 321
Modelled: 325
Confidence: 100.0%
Identity: 31%
PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of ph0066 from pyrococcus horikoshii

Phyre2

PDB 2d6f chain A domain 2

3D model

Region: 2 - 370
Aligned: 341
Modelled: 345
Confidence: 100.0%
Identity: 27%
Fold: Glutaminase/Asparaginase
Superfamily: Glutaminase/Asparaginase
Family: Glutaminase/Asparaginase

Phyre2

PDB 1nns chain A

3D model

Region: 9 - 354
Aligned: 316
Modelled: 322
Confidence: 100.0%
Identity: 25%
Fold: Glutaminase/Asparaginase
Superfamily: Glutaminase/Asparaginase
Family: Glutaminase/Asparaginase

Phyre2

PDB 1wsa chain A

3D model

Region: 8 - 354
Aligned: 312
Modelled: 318
Confidence: 100.0%
Identity: 24%
Fold: Glutaminase/Asparaginase
Superfamily: Glutaminase/Asparaginase
Family: Glutaminase/Asparaginase

Phyre2

PDB 2wlt chain A

3D model

Region: 9 - 354
Aligned: 315
Modelled: 322
Confidence: 100.0%
Identity: 23%
PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase;
PDBTitle: the crystal structure of helicobacter pylori l-asparaginase2 at 1.4 a resolution

Phyre2

PDB 1o7j chain A

3D model

Region: 9 - 354
Aligned: 311
Modelled: 322
Confidence: 100.0%
Identity: 21%
Fold: Glutaminase/Asparaginase
Superfamily: Glutaminase/Asparaginase
Family: Glutaminase/Asparaginase

Phyre2

PDB 1agx chain A

3D model

Region: 8 - 354
Aligned: 316
Modelled: 323
Confidence: 100.0%
Identity: 23%
Fold: Glutaminase/Asparaginase
Superfamily: Glutaminase/Asparaginase
Family: Glutaminase/Asparaginase

Phyre2

PDB 4pga chain A

3D model

Region: 9 - 354
Aligned: 315
Modelled: 322
Confidence: 100.0%
Identity: 19%
Fold: Glutaminase/Asparaginase
Superfamily: Glutaminase/Asparaginase
Family: Glutaminase/Asparaginase

Phyre2

PDB 3nxk chain E

3D model

Region: 8 - 354
Aligned: 307
Modelled: 323
Confidence: 100.0%
Identity: 23%
PDB header:hydrolase
Chain: E: PDB Molecule:cytoplasmic l-asparaginase;
PDBTitle: crystal structure of probable cytoplasmic l-asparaginase from2 campylobacter jejuni

Phyre2

PDB 1n11 chain A

3D model

Region: 400 - 556
Aligned: 156
Modelled: 157
Confidence: 100.0%
Identity: 30%
Fold: beta-hairpin-alpha-hairpin repeat
Superfamily: Ankyrin repeat
Family: Ankyrin repeat

Phyre2

PDB 1n11 chain A

3D model

Region: 400 - 556
Aligned: 156
Modelled: 157
Confidence: 100.0%
Identity: 30%
PDB header:structural protein
Chain: A: PDB Molecule:ankyrin;
PDBTitle: d34 region of human ankyrin-r and linker

Phyre2

PDB 3kea chain B

3D model

Region: 394 - 562
Aligned: 166
Modelled: 169
Confidence: 100.0%
Identity: 17%
PDB header:viral protein
Chain: B: PDB Molecule:k1l;
PDBTitle: structure function studies of vaccinia virus host-range protein k12 reveal a novel ankyrin repeat interaction surface for k1s function

Phyre2

PDB 2aja chain A

3D model

Region: 389 - 553
Aligned: 164
Modelled: 165
Confidence: 99.9%
Identity: 22%
PDB header:protein binding
Chain: A: PDB Molecule:ankyrin repeat family protein;
PDBTitle: x-ray structure of an ankyrin repeat family protein q5zsv02 from legionella pneumophila. northeast structural genomics3 consortium target lgr21.

Phyre2

PDB 1wdy chain A

3D model

Region: 400 - 561
Aligned: 162
Modelled: 162
Confidence: 99.9%
Identity: 25%
Fold: beta-hairpin-alpha-hairpin repeat
Superfamily: Ankyrin repeat
Family: Ankyrin repeat

Phyre2

PDB 1s70 chain B

3D model

Region: 400 - 559
Aligned: 155
Modelled: 159
Confidence: 99.9%
Identity: 30%
Fold: beta-hairpin-alpha-hairpin repeat
Superfamily: Ankyrin repeat
Family: Ankyrin repeat

Phyre2

PDB 2vge chain A

3D model

Region: 395 - 557
Aligned: 163
Modelled: 163
Confidence: 99.9%
Identity: 21%
PDB header:transcription
Chain: A: PDB Molecule:rela-associated inhibitor;
PDBTitle: crystal structure of the c-terminal region of human iaspp

Phyre2

PDB 2fo1 chain E domain 1

3D model

Region: 400 - 554
Aligned: 154
Modelled: 150
Confidence: 99.9%
Identity: 27%
Fold: beta-hairpin-alpha-hairpin repeat
Superfamily: Ankyrin repeat
Family: Ankyrin repeat

Phyre2
1
c1zq1B_
2
c2d6fA_
3
d2ocda1
4
c2p2dA_
5
d1zq1a2
6
c1wnfA_
7
d2d6fa2
8
d1nnsa_
9
d1wsaa_
10
c2wltA_
11
d1o7ja_
12
d1agxa_
13
d4pgaa_
14
c3nxkE_
15
d1n11a_
16
c1n11A_
17
c3keaB_
18
c2ajaA_
19
d1wdya_
20
d1s70b_
21
22
23
24
c2vgeA_
25
26
27
28
29
30
d2fo1e1
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1zq1B_
100.0 29 PDB header:lyase
Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d;
PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi
2c2d6fA_
100.0 28 PDB header:ligase/rna
Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d;
PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln)
3d2ocda1
100.0 44 Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
4c2p2dA_
100.0 47 PDB header:transferase
Chain: A: PDB Molecule:l-asparaginase i;
PDBTitle: crystal structure and allosteric regulation of the cytoplasmic2 escherichia coli l-asparaginase i
5d1zq1a2
100.0 29 Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
6c1wnfA_
100.0 31 PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of ph0066 from pyrococcus horikoshii
7d2d6fa2
100.0 27 Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
8d1nnsa_
100.0 25 Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
9d1wsaa_
100.0 24 Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
10c2wltA_
100.0 23 PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase;
PDBTitle: the crystal structure of helicobacter pylori l-asparaginase2 at 1.4 a resolution
11d1o7ja_
100.0 21 Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
12d1agxa_
100.0 23 Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
13d4pgaa_
100.0 19 Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
14c3nxkE_
100.0 23 PDB header:hydrolase
Chain: E: PDB Molecule:cytoplasmic l-asparaginase;
PDBTitle: crystal structure of probable cytoplasmic l-asparaginase from2 campylobacter jejuni
15d1n11a_
100.0 30 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
16c1n11A_
100.0 30 PDB header:structural protein
Chain: A: PDB Molecule:ankyrin;
PDBTitle: d34 region of human ankyrin-r and linker
17c3keaB_
100.0 17 PDB header:viral protein
Chain: B: PDB Molecule:k1l;
PDBTitle: structure function studies of vaccinia virus host-range protein k12 reveal a novel ankyrin repeat interaction surface for k1s function
18c2ajaA_
99.9 22 PDB header:protein binding
Chain: A: PDB Molecule:ankyrin repeat family protein;
PDBTitle: x-ray structure of an ankyrin repeat family protein q5zsv02 from legionella pneumophila. northeast structural genomics3 consortium target lgr21.
19d1wdya_
99.9 25 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
20d1s70b_
99.9 30 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
21d2ajaa1
not modelled 99.9 13 Fold:alpha-alpha superhelix
Superfamily:Pseudo ankyrin repeat-like
Family:Pseudo ankyrin repeat
22c3utmA_
not modelled 99.9 33 PDB header:transferase/signaling protein
Chain: A: PDB Molecule:tankyrase-1;
PDBTitle: crystal structure of a mouse tankyrase-axin complex
23c4g8kA_
not modelled 99.9 26 PDB header:hydrolase
Chain: A: PDB Molecule:2-5a-dependent ribonuclease;
PDBTitle: intact sensor domain of human rnase l in the inactive signaling state
24c2vgeA_
99.9 21 PDB header:transcription
Chain: A: PDB Molecule:rela-associated inhibitor;
PDBTitle: crystal structure of the c-terminal region of human iaspp
25c4bepB_
not modelled 99.9 29 PDB header:transferase
Chain: B: PDB Molecule:phosphocholine transferase ankx;
PDBTitle: crystal structure of the legionella pneumophila fic domain-2 containing effector ankx protein (apo-form)
26d1uoha_
not modelled 99.9 30 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
27c3ljnA_
not modelled 99.9 22 PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: ankyrin repeat protein from leishmania major
28c1ycsB_
not modelled 99.9 26 PDB header:complex (anti-oncogene/ankyrin repeats)
Chain: B: PDB Molecule:53bp2;
PDBTitle: p53-53bp2 complex
29c2fo1E_
not modelled 99.9 26 PDB header:gene regulation/signalling protein/dna
Chain: E: PDB Molecule:lin-12 protein;
PDBTitle: crystal structure of the csl-notch-mastermind ternary2 complex bound to dna
30d2fo1e1
99.9 27 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
31c3eu9B_
not modelled 99.9 27 PDB header:protein binding, methyl-lysine-binding p
Chain: B: PDB Molecule:huntingtin-interacting protein 14;
PDBTitle: the ankyrin repeat domain of huntingtin interacting protein 14
32c3b7bB_
not modelled 99.9 24 PDB header:transferase
Chain: B: PDB Molecule:euchromatic histone-lysine n-methyltransferase 1;
PDBTitle: euhmt1 (glp) ankyrin repeat domain (structure 1)
33c3t9kA_
not modelled 99.9 24 PDB header:protein transport
Chain: A: PDB Molecule:arf-gap with coiled-coil, ank repeat and ph domain-
PDBTitle: crystal structure of acap1 c-portion mutant s554d fused with integrin2 beta1 peptide
34c2xaiD_
not modelled 99.9 24 PDB header:transcription
Chain: D: PDB Molecule:ankyrin repeat and socs box protein 9;
PDBTitle: crystal structure of ankyrin repeat and socs box-containing2 protein 9 (asb9) in complex with elonginb and elonginc
35c2f8xK_
not modelled 99.9 31 PDB header:transcription/dna
Chain: K: PDB Molecule:neurogenic locus notch homolog protein 1;
PDBTitle: crystal structure of activated notch, csl and maml on hes-12 promoter dna sequence
36c3t8kB_
not modelled 99.9 16 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of a functionally unknown protein lebu_0176 from2 leptotrichia buccalis c-1013-b
37c4hbdA_
not modelled 99.9 23 PDB header:protein binding
Chain: A: PDB Molecule:kn motif and ankyrin repeat domain-containing protein 2;
PDBTitle: crystal structure of kank2 ankyrin repeats
38d1ot8a_
not modelled 99.9 36 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
39c1sw6A_
not modelled 99.9 12 PDB header:transcription regulation
Chain: A: PDB Molecule:regulatory protein swi6;
PDBTitle: s. cerevisiae swi6 ankyrin-repeat fragment
40d1sw6a_
not modelled 99.9 12 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
41c3d9hA_
not modelled 99.9 25 PDB header:structural protein, protein binding
Chain: A: PDB Molecule:cdna flj77766, highly similar to homo sapiens
PDBTitle: crystal structure of the splice variant of human asb92 (hasb9-2), an ankyrin repeat protein
42c3jueA_
not modelled 99.9 36 PDB header:protein transport/endocytosis
Chain: A: PDB Molecule:arfgap with coiled-coil, ank repeat and ph domain-
PDBTitle: crystal structure of arfgap and ank repeat domain of acap1
43c3ui2A_
not modelled 99.9 29 PDB header:transport protein
Chain: A: PDB Molecule:signal recognition particle 43 kda protein, chloroplastic;
PDBTitle: crystal structure of the cpsrp54 tail bound to cpsrp43
44d1k1aa_
not modelled 99.8 25 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
45d1iknd_
not modelled 99.8 23 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
46c2b0oF_
not modelled 99.8 25 PDB header:metal binding protein
Chain: F: PDB Molecule:uplc1;
PDBTitle: crystal structure of uplc1 gap domain
47d1oy3d_
not modelled 99.8 36 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
48c1oy3D_
not modelled 99.8 36 PDB header:dna binding protein
Chain: D: PDB Molecule:transcription factor inhibitor i-kappa-b-beta;
PDBTitle: crystal structure of an ikbbeta/nf-kb p65 homodimer complex
49c2kbxA_
not modelled 99.8 23 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin-linked protein kinase;
PDBTitle: solution structure of ilk-pinch complex
50d1ixva_
not modelled 99.8 25 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
51d1dcqa1
not modelled 99.8 23 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
52c1ympB_
not modelled 99.8 26 PDB header:transcription
Chain: B: PDB Molecule:notch 1 protein;
PDBTitle: the crystal structure of a partial mouse notch-1 ankyrin2 domain: repeats 4 through 7 preserve an ankyrin fold
53c3ehrB_
not modelled 99.8 23 PDB header:signaling protein
Chain: B: PDB Molecule:osteoclast-stimulating factor 1;
PDBTitle: crystal structure of human osteoclast stimulating factor
54c3hraA_
not modelled 99.8 23 PDB header:structural protein
Chain: A: PDB Molecule:ankyrin repeat family protein;
PDBTitle: crystal structure of ef0377 an ankyrin repeat protein
55c1ympA_
not modelled 99.8 26 PDB header:transcription
Chain: A: PDB Molecule:notch 1 protein;
PDBTitle: the crystal structure of a partial mouse notch-1 ankyrin2 domain: repeats 4 through 7 preserve an ankyrin fold
56c3v31A_
not modelled 99.8 24 PDB header:protein binding
Chain: A: PDB Molecule:ankyrin repeat family a protein 2;
PDBTitle: crystal structure of the peptide bound complex of the ankyrin repeat2 domains of human ankra2
57c1dcqA_
not modelled 99.8 23 PDB header:metal binding protein
Chain: A: PDB Molecule:pyk2-associated protein beta;
PDBTitle: crystal structure of the arf-gap domain and ankyrin repeats2 of papbeta.
58c2f37B_
not modelled 99.8 20 PDB header:membrane protein
Chain: B: PDB Molecule:transient receptor potential cation channel
PDBTitle: crystal structure of the ankyrin repeat domain of human2 trpv2
59c3deoA_
not modelled 99.8 31 PDB header:protein transport, membrane protein
Chain: A: PDB Molecule:signal recognition particle 43 kda protein;
PDBTitle: structural basis for specific substrate recognition by the2 chloroplast signal recognition particle protein cpsrp43
60c2rfmB_
not modelled 99.8 20 PDB header:protein binding
Chain: B: PDB Molecule:putative ankyrin repeat protein tv1425;
PDBTitle: structure of a thermophilic ankyrin repeat protein
61c2rfaA_
not modelled 99.8 21 PDB header:membrane protein
Chain: A: PDB Molecule:transient receptor potential cation channel subfamily v
PDBTitle: crystal structure of the mouse trpv6 ankyrin repeat domain
62d1ycsb1
not modelled 99.8 26 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
63c3jxiA_
not modelled 99.8 22 PDB header:membrane protein
Chain: A: PDB Molecule:vanilloid receptor-related osmotically activated channel
PDBTitle: crystal structure of the chicken trpv4 ankyrin repeat domain
64c3lvrE_
not modelled 99.8 21 PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium
65c3twtD_
not modelled 99.8 32 PDB header:signaling protein/peptide
Chain: D: PDB Molecule:tankyrase-2;
PDBTitle: crystal structure of arc4 from human tankyrase 2 in complex with2 peptide from human mcl1 (chimeric peptide)
66c4gmrA_
not modelled 99.8 34 PDB header:de novo protein
Chain: A: PDB Molecule:or266 de novo protein;
PDBTitle: crystal structure of engineered protein. northeast structural genomics2 consortium target or266.
67c2jabC_
not modelled 99.8 31 PDB header:de novo protein
Chain: C: PDB Molecule:h10-2-g3;
PDBTitle: a designed ankyrin repeat protein evolved to picomolar2 affinity to her2
68c3c5rB_
not modelled 99.8 23 PDB header:protein binding
Chain: B: PDB Molecule:brca1-associated ring domain protein 1;
PDBTitle: crystal structure of the bard1 ankyrin repeat domain and its2 functional consequences
69c1mj0A_
not modelled 99.7 33 PDB header:de novo protein
Chain: A: PDB Molecule:sank e3_5 protein;
PDBTitle: sank e3_5: an artificial ankyrin repeat protein
70c2v5qC_
not modelled 99.7 29 PDB header:transferase
Chain: C: PDB Molecule:design ankyrin repeat protein;
PDBTitle: crystal structure of wild-type plk-1 kinase domain in2 complex with a selective darpin
71c3v30A_
not modelled 99.7 25 PDB header:protein binding
Chain: A: PDB Molecule:dna-binding protein rfxank;
PDBTitle: crystal structure of the peptide bound complex of the ankyrin repeat2 domains of human rfxank
72d1bi7b_
not modelled 99.7 28 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
73c2nyjA_
not modelled 99.7 20 PDB header:transport protein
Chain: A: PDB Molecule:transient receptor potential cation channel
PDBTitle: crystal structure of the ankyrin repeat domain of trpv1
74c4b93B_
not modelled 99.7 29 PDB header:exocytosis
Chain: B: PDB Molecule:ankyrin repeat domain-containing protein 27;
PDBTitle: complex of vamp7 cytoplasmic domain with 2nd ankyrin repeat2 domain of varp
75d1myoa_
not modelled 99.7 21 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
76d1blxb_
not modelled 99.7 21 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
77d2a5ea_
not modelled 99.7 24 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
78d1ihba_
not modelled 99.7 21 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
79d1awcb_
not modelled 99.7 26 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
80d1bd8a_
not modelled 99.7 23 Fold:beta-hairpin-alpha-hairpin repeat
Superfamily:Ankyrin repeat
Family:Ankyrin repeat
81c2zgdA_
not modelled 99.6 29 PDB header:de novo protein
Chain: A: PDB Molecule:3 repeat synthetic ankyrin;
PDBTitle: asn-hydroxylation stabilises the ankyrin repeat domain fold
82c2l6bA_
not modelled 99.6 37 PDB header:de novo protein
Chain: A: PDB Molecule:nr1c;
PDBTitle: nrc consensus ankyrin repeat protein solution structure
83c2xenA_
not modelled 99.6 35 PDB header:de novo protein
Chain: A: PDB Molecule:ni1c mut4;
PDBTitle: structural determinants for improved thermal stability of2 designed ankyrin repeat proteins with a redesigned c-3 capping module.
84c1n0rA_
not modelled 99.5 38 PDB header:structural protein
Chain: A: PDB Molecule:4 ankyrin repeats;
PDBTitle: 4ank: a designed ankyrin repeat protein with four identical2 consensus repeats
85c1n0qB_
not modelled 99.5 45 PDB header:structural protein
Chain: B: PDB Molecule:3 ankyrin repeats;
PDBTitle: 3ank: a designed ankyrin repeat protein with three identical consensus2 repeats
86c3lwzC_
not modelled 89.8 14 PDB header:lyase
Chain: C: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: 1.65 angstrom resolution crystal structure of type ii 3-2 dehydroquinate dehydratase (aroq) from yersinia pestis
87d1tuba1
not modelled 89.6 15 Fold:Tubulin nucleotide-binding domain-like
Superfamily:Tubulin nucleotide-binding domain-like
Family:Tubulin, GTPase domain
88d1gqoa_
not modelled 86.6 21 Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
89c3k2qA_
not modelled 86.5 20 PDB header:transferase
Chain: A: PDB Molecule:pyrophosphate-dependent phosphofructokinase;
PDBTitle: crystal structure of pyrophosphate-dependent2 phosphofructokinase from marinobacter aquaeolei, northeast3 structural genomics consortium target mqr88
90d1dxya2
not modelled 84.3 15 Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:Formate/glycerate dehydrogenases, substrate-binding domain
91c3opyB_
not modelled 82.4 14 PDB header:transferase
Chain: B: PDB Molecule:6-phosphofructo-1-kinase beta-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
92c3opyH_
not modelled 82.4 14 PDB header:transferase
Chain: H: PDB Molecule:6-phosphofructo-1-kinase beta-subunit;
PDBTitle: crystal structure of pichia pastoris phosphofructokinase in the t-2 state
93d1tubb1
not modelled 82.3 15 Fold:Tubulin nucleotide-binding domain-like
Superfamily:Tubulin nucleotide-binding domain-like
Family:Tubulin, GTPase domain
94c1zxxA_
not modelled 82.2 14 PDB header:transferase
Chain: A: PDB Molecule:6-phosphofructokinase;
PDBTitle: the crystal structure of phosphofructokinase from lactobacillus2 delbrueckii
95d1uqra_
not modelled 80.9 10 Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
96d2btoa1
not modelled 80.2 20 Fold:Tubulin nucleotide-binding domain-like
Superfamily:Tubulin nucleotide-binding domain-like
Family:Tubulin, GTPase domain
97c3efeC_
not modelled 78.9 17 PDB header:chaperone
Chain: C: PDB Molecule:thij/pfpi family protein;
PDBTitle: the crystal structure of the thij/pfpi family protein from bacillus2 anthracis
98d1h05a_
not modelled 78.5 17 Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
99c3n8kG_
not modelled 78.0 17 PDB header:lyase
Chain: G: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: type ii dehydroquinase from mycobacterium tuberculosis complexed with2 citrazinic acid
100c4kzkA_
not modelled 77.5 15 PDB header:sugar binding protein
Chain: A: PDB Molecule:l-arabinose abc transporter, periplasmic l-arabinose-
PDBTitle: the structure of the periplasmic l-arabinose binding protein from2 burkholderia thailandensis
101c1powA_
not modelled 76.7 11 PDB header:oxidoreductase(oxygen as acceptor)
Chain: A: PDB Molecule:pyruvate oxidase;
PDBTitle: the refined structures of a stabilized mutant and of wild-type2 pyruvate oxidase from lactobacillus plantarum
102d1gtza_
not modelled 76.7 17 Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
103d1q7ra_
not modelled 76.6 20 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
104c3d54D_
not modelled 76.3 21 PDB header:ligase
Chain: D: PDB Molecule:phosphoribosylformylglycinamidine synthase 1;
PDBTitle: stucture of purlqs from thermotoga maritima
105d1pfka_
not modelled 75.5 17 Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
106c2p4nB_
not modelled 75.3 15 PDB header:transport protein
Chain: B: PDB Molecule:tubulin beta chain;
PDBTitle: human monomeric kinesin (1bg2) and bovine tubulin (1jff)2 docked into the 9-angstrom cryo-em map of nucleotide-free3 kinesin complexed to the microtubule
107c2pr7A_
not modelled 74.1 15 PDB header:hydrolase
Chain: A: PDB Molecule:haloacid dehalogenase/epoxide hydrolase family;
PDBTitle: crystal structure of uncharacterized protein (np_599989.1) from2 corynebacterium glutamicum atcc 13032 kitasato at 1.44 a resolution
108d4pfka_
not modelled 72.2 17 Fold:Phosphofructokinase
Superfamily:Phosphofructokinase
Family:Phosphofructokinase
109d1sc6a2
not modelled 71.3 17 Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:Formate/glycerate dehydrogenases, substrate-binding domain
110d1j4aa2
not modelled 70.5 17 Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:Formate/glycerate dehydrogenases, substrate-binding domain
111c2uygF_
not modelled 69.7 19 PDB header:lyase
Chain: F: PDB Molecule:3-dehydroquinate dehydratase;
PDBTitle: crystallogaphic structure of the typeii 3-dehydroquinase2 from thermus thermophilus
112c3edlA_
not modelled 68.7 15 PDB header:structural protein
Chain: A: PDB Molecule:alpha-tubulin;
PDBTitle: kinesin13-microtubule ring complex
113d2fexa1
not modelled 67.2 19 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
114d2c4va1
not modelled 66.5 19 Fold:Flavodoxin-like
Superfamily:Type II 3-dehydroquinate dehydratase
Family:Type II 3-dehydroquinate dehydratase
115c2higA_
not modelled 64.5 18 PDB header:transferase
Chain: A: PDB Molecule:6-phospho-1-fructokinase;
PDBTitle: crystal structure of phosphofructokinase apoenzyme from trypanosoma2 brucei.
116c4hcjA_
not modelled 64.2 15 PDB header:hydrolase
Chain: A: PDB Molecule:thij/pfpi domain protein;
PDBTitle: crystal structure of thij/pfpi domain protein from brachyspira2 murdochii
117c3u80A_
not modelled 63.0 10 PDB header:unknown function
Chain: A: PDB Molecule:3-dehydroquinate dehydratase, type ii;
PDBTitle: 1.60 angstrom resolution crystal structure of a 3-dehydroquinate2 dehydratase-like protein from bifidobacterium longum
118c3o8oB_
not modelled 61.9 17 PDB header:transferase
Chain: B: PDB Molecule:6-phosphofructokinase subunit beta;
PDBTitle: structure of phosphofructokinase from saccharomyces cerevisiae
119d1oi4a1
not modelled 61.8 11 Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:DJ-1/PfpI
120c3kipU_
not modelled 60.0 19 PDB header:lyase
Chain: U: PDB Molecule:3-dehydroquinase, type ii;
PDBTitle: crystal structure of type-ii 3-dehydroquinase from c. albicans

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite