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Job DescriptionA0JNU3
Confidence99.87%DateWed Jul 10 14:11:33 BST 2013
Rank35Aligned Residues151
% Identity31%Templatec2f8xK_
PDB info PDB header:transcription/dnaChain: K: PDB Molecule:neurogenic locus notch homolog protein 1; PDBTitle: crystal structure of activated notch, csl and maml on hes-12 promoter dna sequence
Resolution3.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   400.........410.........420.........430.........440.........450.........
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Query Sequence  GLALAAAHAGDLDTLQAFVELDRDLNLKDYSGQTPLHVAARRGHAAVVTMLLQRGADVDA
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Template Sequence  TPLMIASCSAVISDFIYSLH. . . . . NQTDRTGETALHLAARYSRSDAAKRLLEASADANI
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   1884.....1890.........1900... ......1910.........1920.........1930........
 
   460.........470.........480........
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Query Sequence  RNEDGQSPLLLAVRGRHQSVIGLLRAAGA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN
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   1958.1960.........1970.........1980.........1990.........2000.........2010.......
 
   489490.........500.........510...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RLSPQELEDVGTELCRLASRGDSEG
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Template Sequence  SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYET
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   2018.2020.........2030.........2040.........2050.........2060.........2070.......
 
   514.....520.........530.........540.........550.....
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Query Sequence  LRAWWQAGADLGQPDYDGHCALQVAEAAGNADVVALLQSFKD
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Template Sequence  AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL
Template Known Secondary structure  TT

TT


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   2078.2080.........2090.........2100.........2110.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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