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Job DescriptionA0JNU3
Confidence99.78%DateWed Jul 10 14:11:33 BST 2013
Rank61Aligned Residues160
% Identity21%Templatec2rfaA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:transient receptor potential cation channel subfamily v PDBTitle: crystal structure of the mouse trpv6 ankyrin repeat domain
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   397..400.........410......... 420.........430.........440.........450....
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Query Sequence  LLPGLALAAAHAGDLDTLQAFVE. LDRDLNLKDYSGQTPLHVAARRGHAAVVTMLLQRG.
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Template Sequence  IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP
Template Known Secondary structure 
TT
TT
TTT
S
TT


TTS

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G
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   44.....50.........60.........70.........80.........90.........100...
 
   455....460....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ADVDARNEDG
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Template Sequence  ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG
Template Known Secondary structure  GGGG



STTTTT

TT
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SGGGS

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   104.....110.........120.........130.........140.........150.........160...
 
   465....470.........480.........490.........500.........510.........
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Query Sequence  QSPLLLAVRGRHQSVIGLLRAAGARLSPQELEDVGTELCRLASRGDSEGLRAWWQ. . . . .
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Template Sequence  EHPLSFAACVGSEEIVRLLIEHGADIRAQD. SLGNTVLHILILQPNKTFACQMYNLLLSY
Template Known Secondary structure  SST
TT

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T
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T
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   164.....170.........180.........190... ......200.........210.........220..
 
   520.........530.........540.........550.......
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Query Sequence  . . . . . AGADLGQPDYDGHCALQVAEAAGNADVVALLQSFKDSV
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Template Sequence  DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI
Template Known Secondary structure  T
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GGG


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T

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   223......230.........240.........250.........260.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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