Return to main results Retrieve Phyre Job Id

Job DescriptionA0JNU3
Confidence29.89%DateWed Jul 10 14:11:33 BST 2013
Rank244Aligned Residues35
% Identity11%Templatec2v4xA_
PDB info PDB header:viral proteinChain: A: PDB Molecule:capsid protein p27; PDBTitle: crystal structure of jaagsiekte sheep retrovirus capsid n-2 terminal domain
Resolution1.5 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   65....70.........80.........90.........100
Predicted Secondary structure 

















Query SS confidence 



































Query Sequence  PASPDQRIIYTVLECQPLFDSSDMTITEWVQIAQTI
Query Conservation               
    


       
  

  
Alig confidence 
















.

















Template Conservation 
  

  



  


 .
    
 
 

  



 
Template Sequence  CSQYGPTAPFTIAXIEN. LGTQALPPNDWKQTARAC
Template Known Secondary structure  T
TTS.TS


Template Predicted Secondary structure 



.




Template SS confidence 



































   26...30.........40.. .......50.........60
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D