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Job DescriptionA0JNU3
Confidence100.00%DateWed Jul 10 14:11:33 BST 2013
Rank2Aligned Residues339
% Identity28%Templatec2d6fA_
PDB info PDB header:ligase/rnaChain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln)
Resolution3.15 Å
Model Dimensions (Å)X:69.482 Y:55.135 Z:47.375

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20... ......30.........40.........50.........
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Query Sequence  ARAMGPERRLLAIYTGGTIGMR. . SEGGVLVPGRGLAAVLKTLHMFHDEEYAQAHSLPED
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Template Sequence  AAEDPELPDVSIISTGGTVASIIDYRTGAVHPAFTADDLLRANPELLDIANIRGRAVFN.
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   84.....90.........100.........110.........120.........130.........140..
 
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Query Sequence  TLVLPPASPDQRIIYTVLECQPLFDSSDMTITEWVQIAQTIERHYAQ. YQGFVVIHGTDT
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . ILSENMKPEYWVETARAVYGEIKDGADGVVVAHGTDT
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GGG

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   143......150.........160.........170.........
 
   119120.........130.........140.........150.........160.........170........
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Query Sequence  MAFAASVLSFMLENLQKPVVLTGAQVPIHALWSDGRENLLGALLMAGQYVIPEVCLFFQN
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Template Sequence  MHYTSAALSFMLRT. PVPVVFTGAQRSSDRPSSDASLNIQCSVRAATS. EIAEVTVCMHA
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   180.........190... ......200.........210.........220...... ...230.......
 
   179 180.........190.........200.........210.........220.........230.
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Query Sequence  Q. . . . . . . LFRGNRTTKVDARRFAAFCSPNLPPLATVGADVTINRELVRKACGKSHLVVH
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Template Sequence  TMDDLSCHLHRGVKVRKMHTSRRDTFRSMNALPLAEVTPDGIKILEENYRKRGSDELELS
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   238.240.........250.........260.........270.........280.........290.......
 
   232.......240.........250.........260.........270.........280.........290.
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Query Sequence  SSMEPDVGLLRLYPGIPASLVRTFLQPPLKGVVMETFGSGNGPTKPDLLQELRVAAEQGL
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Template Sequence  DRVEERVAFIKSYPGISPDIIKWHLDEGYRGIVIEGTGLGHCP. . DTLIPVIGEAHDMGV
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   298.300.........310.........320.........330.........340 .........350.....
 
   292.......300..... ....310.........320.........330.........340.........350
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Query Sequence  IIVNCTHCLQGAVT. SDYASGMAMAGAGIVSGFDMTSEAALAKLSYVLGQPGLSLNDRKK
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Template Sequence  PVAMTSQCLNGRVNMNVYSTGRRLLQAGVIPCDDMLPEVAYVKMCWVLGQ. TDDPEMARE
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   356...360.........370.........380.........390.........400..... ....410....
 
   351........360.........
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Query Sequence  LLAKDLRGEMTLPATDVLL
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Template Sequence  MMRENIAGEINERTSIAYF
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   415....420.........430...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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