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Job DescriptionA0JNU3
Confidence99.74%DateWed Jul 10 14:11:33 BST 2013
Rank73Aligned Residues157
% Identity20%Templatec2nyjA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:transient receptor potential cation channel PDBTitle: crystal structure of the ankyrin repeat domain of trpv1
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   399400.........410.........420 ....... ..430...... ...440.......
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Query Sequence  PGLALAAAHAGDLDTLQAFVEL. . . . . . . DRDLNLK. DYSGQTPLH. . . VAARRGHAAVV
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Template Sequence  RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAXLNLHNGQNDTI
Template Known Secondary structure  T
STTTTT


TTSGGGS
TTT




BTTB
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   114.....120.........130.........140.........150.........160.........170...
 
   448.450...... ...460.........470.........480.........490...
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Query Sequence  TMLLQRGAD. . . . . . . . . . . VDARNEDGQSPLLLAVRGRHQSVIGLLRAAGARLSPQ. . .
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Template Sequence  ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNXTLVTLLVENGADVQAAANG
Template Known Secondary structure  TTT
ST
B

SSSS
S
BTT
TTT

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S
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   174.....180.........190.........200.........210.........220.........230...
 
   494...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ELED
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Template Sequence  DFFKKTKFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTV
Template Known Secondary structure  GGGSS




STT
T
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TT


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   234.....240.........250.........260.........270.........280.........290...
 
   498.500.........510.........520.........530.........540.........550.....
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Query Sequence  VGTELCRLASRGDSEGLRAWWQAGADLGQPDYDGHCALQVAEAAGNADVVALLQSFKD
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Template Sequence  DNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI
Template Known Secondary structure  T
TT

GGG


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T
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   300.........310.........320.........330.........340.........350.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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