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Job DescriptionA0JNU3
Confidence99.88%DateWed Jul 10 14:11:33 BST 2013
Rank33Aligned Residues176
% Identity24%Templatec3t9kA_
PDB info PDB header:protein transportChain: A: PDB Molecule:arf-gap with coiled-coil, ank repeat and ph domain- PDBTitle: crystal structure of acap1 c-portion mutant s554d fused with integrin2 beta1 peptide
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   343......350.........360.........370.........380.........390.........400
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Query Sequence  LSLNDRKKLLAKDLRGEMTLPATDVLLQDGMLGCRVAWLLSMNGSQEADTMKDVLLPG. .
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Template Sequence  LGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLPEIRGSLHPGAL
Template Known Secondary structure  S
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   476...480.........490.........500.........510.........520.........530.....
 
   401........410.........420........ .430.........440.........450........
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Query Sequence  LALAAAHAGDLDTLQAFVELDRDLNLKD. . YSGQTPLHVAARRGHAAVVTMLLQRGADVD
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Template Sequence  LFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN
Template Known Secondary structure  SSS

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   575....580.........590.........600.........610.........620.........630....
 
   459460.........470.........480.........490.........500.........510........
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Query Sequence  ARNEDGQSPLLLAVRGRHQSVIGLLRAAGARLSPQELEDVGTELCRLASRGDSEGLRAWW
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Template Sequence  QADSAGRGPLHHATILGHTGLACLFLK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   635....640.........650.........660.
 
   519520.........530.........540.........550..
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Query Sequence  QAGADLGQPDYDGHCALQVAEAAGNADVVALLQS
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Template Sequence  . RGADLGARDSEGRDPLTIAMETANADIVTLLRL
Template Known Secondary structure  .TT

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   662.......670.........680.........690....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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