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Job DescriptionA0JNU3
Confidence50.33%DateWed Jul 10 14:11:33 BST 2013
Rank148Aligned Residues196
% Identity12%Templatec3zq4C_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:ribonuclease j 1; PDBTitle: unusual, dual endo- and exo-nuclease activity in the degradosome2 explained by crystal structure analysis of rnase j1
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110..... ....120.........130.........140.........150......
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Query Sequence  QTIERHYAQYQGFVVIHG. TDTMAFAASVLSFMLENLQKPVVLTGAQVPIHALWSDGREN
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Template Sequence  TYLVKNEDKIKGLFITHGHEDHI. . . . GGIPYLLRQVNIPVYGG. . . . . . . . . . . KLAIG
Template Known Secondary structure  TTGGGS


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   58.60.........70.........80 .........90....... ..100..
 
   157..160.........170.........180.........190.........200.........210......
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Query Sequence  LLGALLMAGQYVIPEVCLFFQNQLFRGNRTTKVDARRFAAFCSPNLPPLATVGADVTINR
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Template Sequence  LLRNKLEEHGLLRQ. . . . . TKLNIIGEDDIVKFRKTAVSFFRTTHSIP. DSYGIVVKTPP
Template Known Secondary structure  STTTT.....S


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   103......110...... ...120.........130.........140..... ....150......
 
   217..220.........230.........240.........250.........260......... 270...
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Query Sequence  ELVRKACGKSHLVVHSSMEPDVGLLRLYPGIPASLVRTFLQPPLKGVVMETFG. . . SGNG
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Template Sequence  GNIV. . . HTGDFKFDFTP. . . . . . . . VGEPANLTKMAEIGKEGVLCLLSDSTNSENPEFT
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   157..160 .........170. ........180.........190.........200.....
 
   274.....280......... 290.........300.........310.........320.....
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Query Sequence  PTKPDLLQELRVAAEQ. . GLIIVNCTHCLQGAVTSDYASGMAMAGAGIVSGFDM
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Template Sequence  MSERRVGESIHDIFRKVDGRIIFATFASNIHRLQQVIEAAVQNGRKVAVFGRSM
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   206...210.........220.........230.........240.........250.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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