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Job DescriptionA0JNU3
Confidence100.00%DateWed Jul 10 14:11:33 BST 2013
Rank1Aligned Residues341
% Identity29%Templatec1zq1B_
PDB info PDB header:lyaseChain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi
Resolution3.00 Å
Model Dimensions (Å)X:74.061 Y:44.658 Z:47.384

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  MARAMGPERRLLAIYTGGTIGMR. . SEGGVLVPGRGLAAVLKTLHMFHDEEYAQAHSLPE
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Template Sequence  LIEGKPGLPEVTIIGTGGTIASRIDYETGAVYPAFTAEELAKALPEIFEVANVKPKLLFN
Template Known Secondary structure  S



TT

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TTTT



GGGGGTS


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   84.....90.........100.........110.........120.........130.........140...
 
   5960.........70.........80.........90.........100..... ....110.......
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Query Sequence  DTLVLPPASPDQRIIYTVLECQPLFDSSDMTITEWVQIAQTIERHYA. QYQGFVVIHGTD
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . IFSEDXKPKHWVKIAHEVAKALNSGDYGVVVAHGTD
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GGG

T
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   144.....150.........160.........170.........
 
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Query Sequence  TMAFAASVLSFMLENLQKPVVLTGAQVPIHALWSDGRENLLGALLMAGQYVIPEVCLFFQ
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Template Sequence  TXGYTAAALSFXLRNLGKPVVLVGAQRSSDRPSSDAAXNLICSVRXATS. EVAEVXVVXH
Template Known Secondary structure  TSBT

S


SS
TTSTT
STS.SB
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   180.........190.........200.........210.........220........ .230........
 
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Query Sequence  NQ. . . . . . . LFRGNRTTKVDARRFAAFCSPNLPPLATVGADVTINR. ELVRKACGKSHLV
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Template Sequence  GETGDTYCLAHRGTKVRKXHTSRRDAFRSINDVPIAKIWPNGEIEFLRKDYRKRSDEEVE
Template Known Secondary structure  SSSSSS
TTS
SSS
GGGSSS

S
TTS
S
S
S
B

S


B
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   239240.........250.........260.........270.........280.........290........
 
   230.........240.........250.........260.........270.........280.........
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Query Sequence  VHSSMEPDVGLLRLYPGIPASLVRTFLQPPLKGVVMETFGSGNGPTKPDLLQELRVAAEQ
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Template Sequence  VDDKIEEKVALVKVYPGISSEIIDFLVDKGYKGIVIEGTGLGHTP. . NDIIPSIERAVEE
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Query Sequence  GLIIVNCTHCLQGAVT. SDYASGMAMAGAGIVSGFDMTSEAALAKLSYVLGQPGLSLNDR
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Template Sequence  GVAVCXTSQCIYGRVNLNVYSTGRKLLKAGVIPCEDXLPETAYVKLXWVLGH. TQNLEEV
Template Known Secondary structure  T


SSSSS


TTSSTT

TT

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   357..360.........370.........380.........390.........400........ .410.....
 
   349350.........360.........
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Query Sequence  KKLLAKDLRGEMTLPATDVLL
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Template Sequence  RKXXLTNYAGEITPYTRFDTY
Template Known Secondary structure  TS
SSSSS
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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