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Job DescriptionA0JNU3
Confidence99.77%DateWed Jul 10 14:11:33 BST 2013
Rank63Aligned Residues161
% Identity22%Templatec3jxiA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:vanilloid receptor-related osmotically activated channel PDBTitle: crystal structure of the chicken trpv4 ankyrin repeat domain
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   394.....400...... ...410.........420...... ...430.........
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Query Sequence  KDVLLPGLALAAA. . . HAGDLDTLQAFVELDRDLNL. . . . . . . . . . . KDYSGQTPLHVAA
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Template Sequence  EPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAI
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   173......180.........190.........200.........210.........220.........230..
 
   440.........450......... 460.........470.........480.....
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Query Sequence  RRGHAAVVTMLLQRGADVDA. . . . . . . . . . . . . . RNEDGQSPLLLAVRGRHQSVIGLLRA
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Template Sequence  ERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE
Template Known Secondary structure  TT
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   233......240.........250.........260.........270.........280.........290..
 
   486...490... ......500.........510.........520.......
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Query Sequence  AGARLSPQ. . . . . . . . . . . . . . . . . . ELEDVGTELCRLASRGDSEGLRAWWQAGADLGQP
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Template Sequence  NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALL
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TT


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   293......300.........310.........320.........330.........340.........350..
 
   528.530.........540.........550....
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Query Sequence  DYDGHCALQVAEAAGNADVVALLQSFK
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Template Sequence  NNDGLSPLMMAAKTGKIGIFQHIIRRE
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   353......360.........370.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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