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Job DescriptionA0JNU3
Confidence99.84%DateWed Jul 10 14:11:33 BST 2013
Rank48Aligned Residues135
% Identity36%Templatec1oy3D_
PDB info PDB header:dna binding proteinChain: D: PDB Molecule:transcription factor inhibitor i-kappa-b-beta; PDBTitle: crystal structure of an ikbbeta/nf-kb p65 homodimer complex
Resolution2.05 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   424.....430.........440.........450...... ...460.........470.........480
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Query Sequence  LNLKDYSGQTPLHVAARRGHAAVVTMLLQRGAD. . . VDARNEDGQSPLLLAVRGRHQSVI
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Template Sequence  FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV
Template Known Secondary structure 




TT


TT
TTSGGGG


TTS

T
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   51........60.........70.........80.........90.........100.........110
 
   481.......
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Query Sequence  GLLRAAGA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDADEDWRLQLEAENY
Template Known Secondary structure  TT

SS


TTS

TTTT
SSS

SS






GGGGTT


T
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   111........120.........130.........140.........150.........160.........170
 
   489490.........500.........510.........520..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . RLSPQELEDVGTELCRLASRGDSEGLRAWWQAGA
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Template Sequence  DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA
Template Known Secondary structure  TS

TT
T

TT


TTT


TT
TT
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   206...210.........220.........230.........240.........250.........260.....
 
   523......530.........540.........550........
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Query Sequence  DLGQPDYDGHCALQVAEAAGNADVVALLQSFKDSVC
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Template Sequence  DPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP
Template Known Secondary structure 
TT


TTS

TSS
TT



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   266...270.........280.........290.........300.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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