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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank128Aligned Residues278
% Identity21%Templatec1zrzA_
PDB info PDB header:transferaseChain: A: PDB Molecule:protein kinase c, iota; PDBTitle: crystal structure of the catalytic domain of atypical2 protein kinase c-iota
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   237..240.........250.........260.........270.... .....280.........290..
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Query Sequence  MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK. . . . EDTMEVEEFLKEAAVMKE
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Template Sequence  LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQ
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STT
SSTTT

GGG

STTTTT
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   240.........250.........260.........270.........280.........290.........
 
   293......300.........310.........320.........330.........340.........350.
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Query Sequence  . IKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAM
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Template Sequence  ASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQR. . QRKLPEEHARFYSAEISLAL
Template Known Secondary structure  TTSSTTB


B
SS


S
BT..TSS

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   300.........310.........320.........330....... ..340.........350.......
 
   352.......360.........370.........380.........390.........400.........410.
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Query Sequence  EYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESL
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Template Sequence  NYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSF. . CGTPNYIAPEIL
Template Known Secondary structure  TT
B




GGG
TTS



TT
B



TT

B

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S
GGG

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   358.360.........370.........380.........390.........400... ......410.....
 
   412.......420.........430.........440.........450.........460.........470.
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Query Sequence  AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYEL
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Template Sequence  RGEDYGFSVDWWALGVLMFEMMA. GRSPFDQNTEDYLFQVILE. KQIRIPRSMSVKAASV
Template Known Secondary structure  TT

B
T.SS
S



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TTS
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   417..420.........430......... 440.........450........ .460.........470....
 
   472.......480.........490.........500.........510.........520.
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Query Sequence  MRACWQWNPSDRPSFAEIHQAFETMFQESSISDEVEKELGKRGTRGGAGS
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Template Sequence  LKSFLNKDPKERLGCLPQTG. FADIQGHPFFRNVDWDMMEQKQVVPPFKP
Template Known Secondary structure  T
SSSTTSTTTSTTT.SGGGSS

TTT
S

S


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   484.....490.........500... ......510.........520.........530..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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