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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank34Aligned Residues248
% Identity23%Templatec3soaA_
PDB info PDB header:transferase/transferase inhibitorChain: A: PDB Molecule:calcium/calmodulin-dependent protein kinase type ii subunit PDBTitle: full-length human camkii
Resolution3.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   239240.........250.........260.........270....... ..280.........290.....
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Query Sequence  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT. . . MEVEEFLKEAAVMKEIKH
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Template Sequence  TEEYQLFEELGKGSVVRRCVK. . VLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKH
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..TTTTS
S


B
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   10.........20.........30 .........40.........50.........60.......
 
   296...300.........310.........320.........330.........340.........350.....
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Query Sequence  PNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE
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Template Sequence  PNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVA. . REYYSEADASHCIQQILEAVLHCH
Template Known Secondary structure  TTB


SS


B

B..
S


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   70.........80.........90.........100... ......110.........120.......
 
   356...360.........370...... ...380.........390.........400.........410..
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Query Sequence  KKNFIHRDLAARNCLVGENHL. . . VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLA
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Template Sequence  QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFG. FAGTPGYLSPEVLR
Template Known Secondary structure  TT
B



SSTTSBSSTT




SS
B


TT

B


.S
S
GGG

T
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   128.130.........140.........150.........160.........170.. .......180......
 
   413......420.........430.........440.........450....... ..460.........
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Query Sequence  YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYR. . . MERPEGCPEKVY
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Template Sequence  KDPYGKPVDLWACGVILYILLV. GYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAK
Template Known Secondary structure  T

B
T.SS
S


SST




TTTTTTS
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   187..190.........200........ .210.........220.........230.........240.....
 
   470.........480.........490..
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Query Sequence  ELMRACWQWNPSDRPSFAEIHQA
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Template Sequence  DLINKMLTINPSKRITAAEALKH
Template Known Secondary structure  S
SSTTTS

S
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   246...250.........260........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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