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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank42Aligned Residues270
% Identity19%Templatec4fijA_
PDB info PDB header:transferaseChain: A: PDB Molecule:serine/threonine-protein kinase pak 4; PDBTitle: catalytic domain of human pak4
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   238.240.........250.........260.........270... ......280.........290......
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Query Sequence  ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL. KEDTMEVEEFLKEAAVMKEIKHP
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Template Sequence  PRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHE
Template Known Secondary structure  GGGT
SSSTTT

STT
SSGGG


T
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   317..320.........330.........340.........350.........360.........370......
 
   297..300.........310.........320.........330.........340.........350......
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Query Sequence  NLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK
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Template Sequence  NVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTR. . . MNEEQIAAVCLAVLQALSVLHA
Template Known Secondary structure  TB

TT


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   377..380.........390.........400.........410. ........420.........430...
 
   357..360.........370.........380.........390.........400.........410......
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Query Sequence  KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKF
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Template Sequence  QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKL. . VGTPYWMAPELISRLPY
Template Known Secondary structure  TT



SGGG
TT




TT


SS


B

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S
GGG

TT

B
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   434.....440.........450.........460.........470.... .....480.........490.
 
   417..420.........430.........440.........450..... ....460.........470....
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Query Sequence  SIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKD. . YRMERPEGCPEKVYELMRA
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Template Sequence  GPEVDIWSLGIMVIEMVD. GEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDR
Template Known Secondary structure 
T.SS
TTTTS
SS



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   493......500.........510 .........520.........530.........540.........550.
 
   475....480.........490.........500.........510.....
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Query Sequence  CWQWNPSDRPSFAEIHQAFETMFQESSISDEVEKELGKRGT
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Template Sequence  LLVRDPAQRATAAELLKH. . PFLAKAGPPASIVPLMRQNRT
Template Known Secondary structure  S
SSTTTS

TT
..GGGGG


GGGGGGGSTTT

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   552.......560......... 570.........580.........590
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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