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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank282Aligned Residues252
% Identity19%Templatec3begA_
PDB info PDB header:transferase/splicingChain: A: PDB Molecule:serine/threonine-protein kinase srpk1; PDBTitle: crystal structure of sr protein kinase 1 complexed to its substrate2 asf/sf2
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   236...240.........250.........260.........270.........280.........290.....
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Query Sequence  EMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKH
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Template Sequence  DLFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRN
Template Known Secondary structure 
TTT
SSSSSSS
S
S
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   74.....80.........90.........100.........110.........120.........130...
 
   296...300........ .310.........320.........330.........340...
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Query Sequence  . . . . . . . . PNLVQLLGVCTRE. . . . PPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYM
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Template Sequence  SDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKII
Template Known Secondary structure  S
TT
TTSTTB



B
SS
B






BTTTS


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   134.....140.........150.........160.........170.........180.........190...
 
   344.....350.........360.........370.... ..
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Query Sequence  ATQISSAMEYLEKKNFIHRDLAARNCLVGEN. . . . . . . . . . . . . . . . . . . . . . . . . . . HL
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Template Sequence  QQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEAAGNFLVNPLEPKNAEKLK
Template Known Secondary structure  S




SGGG


TT




S

SS
GGGTTT

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   194.....200.........210.........220.........230.........240.........250...
 
   377..380.........390.........400.........410.........420.........430......
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Query Sequence  VKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYG
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Template Sequence  VKIADLGNACWVHKHFTE. . . . DIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELAT. G
Template Known Secondary structure 


TT
SS

S
S....

S
GGG

T



T.S
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   493......500.........510 .........520.........530.........540...... .
 
   437..440.........450.....
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Query Sequence  MSPYPGIDLSQVYELLEKD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation     
                      
                                 
Template Sequence  DYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWG
Template Known Secondary structure  S
S





SSS

S

TT
TTB
SSSSBSS

S




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   548.550.........560.........570.........580.........590.........600.......
 
   456...460.........470.........480.........490..
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Query Sequence  . . . . . . YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQA
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Template Sequence  LFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRH
Template Known Secondary structure  TT


TTTT
SSTTTS

S
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   608.610.........620.........630.........640.........650
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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