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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank280Aligned Residues254
% Identity30%Templatec4aaaA_
PDB info PDB header:transferaseChain: A: PDB Molecule:cyclin-dependent kinase-like 2; PDBTitle: crystal structure of the human cdkl2 kinase domain
Resolution1.53 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   240.........250.........260.........270... ......280.........290......
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Query Sequence  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL. . . KEDTMEVEEFLKEAAVMKEIKHP
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Template Sequence  EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHE
Template Known Secondary structure  GGGGGGTTSSTTT

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   2.......10.........20.........30.........40.........50.........60.
 
   297..300.........310.........320.........330.........340.........350......
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Query Sequence  NLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK
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Template Sequence  NLVNLLEVCKKKKRWYLVFEFVDHTILDDLELF. . PNGLDYQVVQKYLFQIINGIGFCHS
Template Known Secondary structure  TB

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   62.......70.........80.........90.... .....100.........110.........
 
   357..360.........370.........380.........390.........400.........410... ..
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Query Sequence  KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAY. NK
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Template Sequence  HNIIHRDIKPENILVSQSGVVKLCDFGFA. . . . . . . . . . . . . EVATRWYRAPELLVGDVK
Template Known Secondary structure  TT






GGG
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   120.........130.........140........ .150.........160......
 
   416...420.........430.........440.........450...
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Query Sequence  FSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLE. . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  YGKAVDVWAIGCLVTEMFM. GEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAG
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   179180.........190....... ..200.........210.........220.........230.......
 
   454.....460.........470.........480.........490.........500.....
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Query Sequence  . . . . . . . . KDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSISDE
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Template Sequence  VRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH. . DFFQMDGFAER
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   238.240.........250.........260.........270.........280.... .....290.....
 
   506...510.
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Query Sequence  VEKELG
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Template Sequence  FSQELQ
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   296...300.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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