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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank278Aligned Residues251
% Identity18%Templatec4fi1A_
PDB info PDB header:transferaseChain: A: PDB Molecule:casein kinase ii subunit alpha; PDBTitle: crystal structure of scck2 alpha in complex with atp
Resolution2.09 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   234.....240.........250.........260.........270.........280.........290...
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Query Sequence  KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI
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Template Sequence  DWSTNTKDYEIENKVGRGKYSEVFQGVKLDSKVKIVIKMLKPVKK. . KKIKREIKILTDL
Template Known Secondary structure 

BS
STTTTTTTT
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   32.......40.........50.........60.........70...... ...80.........
 
   294.....300.........310 ..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . KHPNLVQLLGVCTREPP. . FY
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Template Sequence  SNEKVPPTTLPFQKDQYYTNQKEDVLKFIRPYIFDQPHNGHANIIHLFDIIKDPISKTPA
Template Known Secondary structure 
SS
GGGS







TT

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S


GGGGB


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   90.........100.........110.........120.........130.........140.........
 
   313......320.........330.........340.........350.........360.........370..
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Query Sequence  IITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVG
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Template Sequence  LVFEYVDNVDFRILYPK. . . . . LTDLEIRFYMFELLKALDYCHSMGIMHRDVKPHNVMID
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GGG.....

TT



SGGG
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   150.........160...... ...170.........180.........190.........200....
 
   373......380.........390.........400.........410.........420.........430.
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Query Sequence  . ENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWE
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Template Sequence  HKNKKLRLIDWGLAEFYHVNMEYNVR. VASRFFKGPELLVDYRMYDYSLDLWSFGTMLAS
Template Known Secondary structure  GGGT


TT


TT



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S
GGG

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T
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   205....210.........220.........230 .........240.........250.........260...
 
   432.......440.........450.. ...
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Query Sequence  IATYGMSPYPGIDLSQVYELL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EKD
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Template Sequence  MIFKREPFFHGTSNTDQLVKIVKVLGTSDFEKYLLKYEITLPREFYDMDQYIRKPWHRFI
Template Known Secondary structure  T
SSSS

SS
TT



GGGGG







GGGG
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   264.....270.........280.........290.........300.........310.........320...
 
   456...460.........470.........480.........490..
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Query Sequence  YRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQA
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Template Sequence  NDGNKHLSGNDEIIDLIDNLLRYDHQERLTAKEAMGH
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TTT
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TS
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   324.....330.........340.........350.........360
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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