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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank192Aligned Residues248
% Identity22%Templatec3h4jB_
PDB info PDB header:transferaseChain: B: PDB Molecule:snf1-like protein kinase ssp2; PDBTitle: crystal structure of pombe ampk kdaid fragment
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   241........250.........260.........270......... 280.........290......
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Query Sequence  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME. . . . VEEFLKEAAVMKEIKHP
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Template Sequence  PYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHP
Template Known Secondary structure  TTTTTT

TT
STT


T
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   33......40.........50.........60.........70.........80.........90..
 
   297..300.........310.........320.........330.........340.........350......
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Query Sequence  NLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK
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Template Sequence  HIIKLYDVITTPTDIVMVIEYAGGELFDYIVEKKR. . . MTEDEGRRFFQQIICAIEYCHR
Template Known Secondary structure  TB


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   93......100.........110.........120....... ..130.........140.........
 
   357..360.........370.........380.........390.........400.........410......
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Query Sequence  KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKF
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Template Conservation                                           .                  
Template Sequence  HKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTS. CGSPNYAAPEVINGKLYA
Template Known Secondary structure  T





STTT
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TBTTTTSBTT


.TTSTTTS
GGGS

SGGG
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   150.........160.........170.........180.........190 .........200........
 
   417..420.........430.........440.........450.........460.........470......
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Query Sequence  SIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACW
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Template Sequence  GPEVDVWSCGIVLYVMLV. GRLPFDDEFIPNLFKKV. NSCVYVMPDFLSPGAQSLIRRMI
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.SS
SSB
SSSTT
B


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   209210.........220...... ...230.........240... ......250.........260......
 
   477..480.........490....
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Query Sequence  QWNPSDRPSFAEIHQAFE
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Template Sequence  VADPMQRITIQEIRRDPW
Template Known Secondary structure 
SSGGGS

TT
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   267..270.........280....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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