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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank201Aligned Residues246
% Identity22%Templatec3rp9A_
PDB info PDB header:transferaseChain: A: PDB Molecule:mitogen-activated protein kinase; PDBTitle: crystal structure of the apo mapk from toxoplasma gondii, 25.m01780 or2 tgme49_007820
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   232.......240.........250.........260.........270..... ....280........
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Query Sequence  YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE. . . DTMEVEEFLKEAA
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Template Sequence  HSDWQIP. DRYEIRHLHVCEAYDKLRV. . . . . . . . . VAIKKILRVFEDLIDCKRILREIA
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   46...50.. .......60.........70. ........80.........90.....
 
   289290.........300..... ....310.........320.........330.........340...
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Query Sequence  VMKEIKHPNLVQLLGVC. . . . . TREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYM
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Template Sequence  ILNRLNHDHVVKVLDIVIPKDVEKFDELYVVLEIADSD. FKKLFRT. . PVYLTELHIKTL
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   105....110.........120.........130.........140.. ....... 150.........160.
 
   344.....350.........360.........370.........380.........390.........400...
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Query Sequence  ATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI
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Template Sequence  LYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQ. LPVTR
Template Known Secondary structure  TT
B




GGG
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   162.......170.........180.........190.........200.........210..... ....220
 
   404.....410 .........420.........430.........440....
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Query Sequence  KWTAPES. LAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID. . . . . . . . . . . . . . . . . .
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Template Sequence  WYRAPELILLQENYTEAIDVWSIGCIFAELLN. MIKENVAYHADRGPLFPTRGNRDQLNV
Template Known Secondary structure  TT

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   248.250.........260.........270......... 280.........290.........300......
 
   445....450.........460.. .......470.........480.
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Query Sequence  . . . . . . . . . . . . . . . . . LSQVYELLEKDYRMERPE. . . . . . GCPEKVYELMRACWQWNPS
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Template Sequence  IFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAERFPASSADAIHLLKRMLVFNPN
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   327..330.........340.........350.........360.........370.........380......
 
   482.......490..
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Query Sequence  DRPSFAEIHQA
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Template Sequence  KRITINECLAH
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   387..390.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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