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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank240Aligned Residues272
% Identity20%Templatec3mi9A_
PDB info PDB header:protein bindingChain: A: PDB Molecule:cell division protein kinase 9; PDBTitle: crystal structure of hiv-1 tat complexed with human p-tefb
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   240.........250.........260.........270.... .....280.........290......
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Query Sequence  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK. . . EDTMEVEEFLKEAAVMKEIKHP
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Template Sequence  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE
Template Known Secondary structure  GG
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   17..20.........30.........40.........50.........60.........70......
 
   297..300.........310.........320.........330.........340.........350......
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Query Sequence  NLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK
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Template Sequence  NVVNLIEICRTKGSIYLVFDFCEHDLAGLLSNV. . LVKFTLSEIKRVMQMLLNGLYYIHR
Template Known Secondary structure  TB





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   77..80.........90.........100......... 110.........120.........130....
 
   357..360.........370.........380........ .390.........400.........410. ..
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Query Sequence  KNFIHRDLAARNCLVGENHLVKVADFGLSRLM. . TGDTYTAHAGAKFPIKWTAPESL. AY
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Template Sequence  NKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYNRVVTLWYRPPELLLGE
Template Known Secondary structure  TT



SGGG
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   143......150.........160.........170.........180.........190.........200..
 
   414.....420.........430.........440.........450.........460....
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Query Sequence  NKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGC. . . . . . . . .
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Template Sequence  RDYGPPIDLWGAGCIMAEMWT. RSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELY
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   204.....210.........220.... .....230.........240.........250.........260..
 
   465....470.........480.........490.........500..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . PEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSI
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Template Sequence  EKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNH. . DFFWSDPM
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   263......270.........280.........290.........300.........310.. .......320
 
   503......510......
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Query Sequence  SDEVEKELGKRGTR
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Template Sequence  PSDLKGMLSTHLTS
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   321........330....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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