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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank200Aligned Residues258
% Identity17%Templatec3op5B_
PDB info PDB header:transferaseChain: B: PDB Molecule:serine/threonine-protein kinase vrk1; PDBTitle: human vaccinia-related kinase 1
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   245....250 .........260.. .......270......... 280.....
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Query Sequence  KHKLGG. . GQYGEVYEGVWK. . . . . KYSLTVAVKTLKEDTME. . . . . . . . . . . . VEEFLK
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Template Sequence  AWKVGLPIGQFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQ
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   36...40.........50.........60.........70.........80.........90.....
 
   286...290.........300...... ...310.........320.........330.........340.
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Query Sequence  EAAVMKEIKHPNLVQLLGVCT. . . . REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLL
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Template Sequence  KWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRF. GSDLQKIYEA. NAKRFSRKTVL
Template Known Secondary structure  TT
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   98.100.........110.........120.........130.... .....140.... .....150.....
 
   342.......350.........360.........370... ......380.........390. ..
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Query Sequence  YMATQISSAMEYLEKKNFIHRDLAARNCLVGE. . NHLVKVADFGLSRLMTGD. . . . . . TY
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Template Sequence  QLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAA
Template Known Secondary structure  TT




GGGSS
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   156...160.........170.........180.........190.........200.........210.....
 
   394.....400.........410.........420.........430.........440.........450...
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Query Sequence  TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLE
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Template Sequence  DPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLT. GHLPWEDNLKDPKYVRDS
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TTT

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   216...220.........230.........240.........250...... ...260.........270....
 
   454.... .460.........470.........480.........490.........500...
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Query Sequence  KDYRM. . . . . . . . . . ERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESSIS
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Template Sequence  KIRYRENIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSK
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   275....280.........290.........300.........310.........320.........330....
 
   504.
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Query Sequence  DE
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Template Sequence  DD
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   335.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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