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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank130Aligned Residues247
% Identity42%Templatec4hzsA_
PDB info PDB header:transferaseChain: A: PDB Molecule:activated cdc42 kinase 1; PDBTitle: crystal structure of ack1 kinase domain with c-terminal sh3 domain
Resolution3.23 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   237..240.........250.........260..... ....270..... ....280.........
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Query Sequence  MERTDITMKHKLGGGQYGEVYEGVWKKYS. . . LTVAVKTLKE. . . . DTMEVEEFLKEAAV
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Template Sequence  IGEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNA
Template Known Secondary structure 

GGG



B

TTS
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S
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   121........130.........140.........150.........160.........170.........180
 
   290.........300.........310.........320.........330.........340.........
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Query Sequence  MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS
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Template Sequence  MHSLDHRNLIRLYGVVL. TPPMKMVTELAPLGSLLDRLRK. HQGHFLLGTLSRYAVQVAE
Template Known Secondary structure  T


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   181........190....... ..200.........210......... 220.........230........
 
   350.........360.........370.........380.........390.........400.........
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Query Sequence  AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPE
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Template Sequence  GMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMR. . . . . . . . . . . ALPVPFAWCAPE
Template Known Secondary structure  TT


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SGGGSSSS


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   239240.........250.........260.........270..... ....280.......
 
   410.........420.........430.........440.........450.... .....460........
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Query Sequence  SLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK. DYRMERPEGCPEKV
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Template Sequence  SLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDI
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TTT

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   301........310.........320.........330.........340.........350.........360
 
   469470.........480.........490......
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Query Sequence  YELMRACWQWNPSDRPSFAEIHQAFETM
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Template Sequence  YNVMVQCWAHKPEDRPTFVALRDFLLEA
Template Known Secondary structure  T
SSGGGS

T
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   361........370.........380........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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