Return to main results Retrieve Phyre Job Id

Job DescriptionP00520
Confidence99.61%DateWed Jul 10 14:19:35 BST 2013
Rank421Aligned Residues80
% Identity24%Templatec3or8A_
PDB info PDB header:transcriptionChain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   124.....130.........140.........150.........160...... ...170.........180.
Predicted Secondary structure 




















.




.
Query SS confidence 










































.














.
Query Sequence  KHSWYHGPVSRNAAEYLLSSGINGSFLVRESESSPGQRSISLR. YEGRVYHYRINTASD.
Query Conservation                   
     
 



              .               .
Alig confidence 





.



































.














.
Template Conservation   

 
 . 

   

  
     
 






       

 
       
  
 
    
Template Sequence  NHPYYF. PFNGKQAEDYLRSKERGDFVIRQSSRGDDHLAITWKLDKDLFQHVDIQELEKE
Template Known Secondary structure 

TT.


TTS
TT

SS
TTTTS
S
Template Predicted Secondary structure 





.


















Template SS confidence 



























































   5....10 .........20.........30.........40.........50.........60...
 
   182.......190.........200....
Predicted Secondary structure  .....










Query SS confidence  . . . . .






















Query Sequence  . . . . . GKLYVSSESRFNTLAELVHHHST
Query Conservation  .....                
      
Alig confidence  .....






















Template Conservation      

  
 
    
 





  

 
Template Sequence  NPLALGKVLVVEGQRYHDLDQIIVEYLQ
Template Known Secondary structure  STTS

STTSST
Template Predicted Secondary structure 










Template SS confidence 



























   64.....70.........80.........90.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D