Return to main results Retrieve Phyre Job Id

Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank56Aligned Residues248
% Identity22%Templatec2a1aB_
PDB info PDB header:protein synthesis/transferaseChain: B: PDB Molecule:interferon-induced, double-stranded rna-activated protein PDBTitle: pkr kinase domain-eif2alpha complex
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   239240.........250.........260.........270.........280.........290........
Predicted Secondary structure 
















Query SS confidence 



























































Query Sequence  RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNL
Query Conservation           

 
 

 
           



              
      
 
 

Alig confidence 






































...

















Template Conservation     
     

 
 

 

          



 
    ...     
   
  
 
 

Template Sequence  GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN. . . EKAEREVKALAKLDHVNI
Template Known Secondary structure 
SSSSS



S...GGGGTT


TTB
Template Predicted Secondary structure 













...




Template SS confidence 



























































   264.....270.........280.........290.........300.. .......310.........320
 
   299300....... ..310.........320.........330.........340......
Predicted Secondary structure  ............















Query SS confidence 








. . . . . . . . . . . .






































Query Sequence  VQLLGVCTR. . . . . . . . . . . . EPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQ
Query Conservation 
        ............      
 
    
 
   
                  
Alig confidence 








............






































Template Conservation 
                         

 
      
                       
Template Sequence  VHYNGCWDGFDYDPETSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQ
Template Known Secondary structure 


TT






TT
BTTS


Template Predicted Secondary structure 


































Template SS confidence 



























































   321........330.........340.........350.........360.........370.........380
 
   347..350.........360.........370.........380.........390.........400......
Predicted Secondary structure 






























Query SS confidence 



























































Query Sequence  ISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWT
Query Conservation 
   
  

    





  
 
       

 


 
                     
Alig confidence 
















































...







Template Conservation         

   
 
 

   

        

 


 
          ...      
 
Template Sequence  ITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRR. . . SKGTLRYM
Template Known Secondary structure  TTTT
SGGGTT


TTSS

S


...

S

TTS
Template Predicted Secondary structure 




































...







Template SS confidence 



























































   398.400.........410.........420.........430.........440...... ...450....
 
   407..410.........420.........430.........440.........450.........460......
Predicted Secondary structure 




























Query SS confidence 



























































Query Sequence  APESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPE
Query Conservation 


           



 
  
 
    
  
                           
Alig confidence 



























.




.....




















Template Conservation 


          









 

  .     .....                     
Template Sequence  SPEQISSQDYGKEVDLYALGLILAELLH. VCDTA. . . . . FETSKFFTDLRDGIISDIFDK
Template Known Secondary structure 
S
S


TS.

SS.....TT


TTS
Template Predicted Secondary structure 






.




.....












Template SS confidence 



























































   456...460.........470.........480... ..... .490.........500.........
 
   467..470.........480.........490........
Predicted Secondary structure 




Query SS confidence 































Query Sequence  KVYELMRACWQWNPSDRPSFAEIHQAFETMFQ
Query Conservation      
        
  

              
Alig confidence 































Template Conservation      

   
  

  


  


  
    
Template Sequence  KEKTLLQKLLSKKPEDRPNTSEILRTLTVWKK
Template Known Secondary structure  T
SSGGGS



Template Predicted Secondary structure 








Template SS confidence 































   510.........520.........530.........540.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D