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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank290Aligned Residues237
% Identity23%Templatec4bgqA_
PDB info PDB header:transferaseChain: A: PDB Molecule:cyclin-dependent kinase-like 5; PDBTitle: crystal structure of the human cdkl5 kinase domain
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   240.........250.........260.........270.........280.........290.........
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Query Sequence  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLV
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Template Sequence  NKFEILGVVGEGAYGVVLKCRHKETHEIVAIKKFKVK. . . . ETTLRELKMLRTLKQENIV
Template Known Secondary structure  TTSSS
TTT





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   11........20.........30.........40....... ..50.........60......
 
   300.........310.........320.........330.........340.........350.........
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Query Sequence  QLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNF
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Template Sequence  ELKEAFRRRGKLYLVFEYVEKNMLELLEEM. . PNGVPPEKVKSYIYQLIKAIHWCHKNDI
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TT

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   74.....80.........90.........100... ......110.........120.........130.
 
   360.........370.........380.........390.........400.........410.........
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Query Sequence  IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIK
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Template Sequence  VHRDIKPENLLISHNDVLKLCDFGFARNLSETRW. . . . . . . . . . . YRSPELLLGAPYGKS
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GGG
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TT
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T...........T

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T
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   132.......140.........150.........160..... ....170.........180
 
   420.........430.........440.........450.........
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Query Sequence  SDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRME. . . . . . . . . . . . . . . . . . . .
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Template Sequence  VDMWSVGCILGELSD. GQPLFPGESEIDQLFTIQKVLGPLPSEQMKLFYSNPRFHGLRFP
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SGGGTT



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   192.......200...... ...210.........220.........230.........240.........250
 
   460.........470.........480.........490....
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Query Sequence  . . . . . . . . . . . RPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFE
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Template Sequence  AVNHPQSLERRYLGILNSVLLDLMKNLLKLDPADRYLTEQCLNHPT
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   251........260.........270.........280.........290......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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