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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank141Aligned Residues252
% Identity23%Templatec4dc2A_
PDB info PDB header:transferase/transferase substrateChain: A: PDB Molecule:protein kinase c iota type; PDBTitle: structure of pkc in complex with a substrate peptide from par-3
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   237..240.........250.........260.........270.........280.........290... ..
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Query Sequence  MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI. KH
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Template Sequence  LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNIDWVQTEKHVFEQASNH
Template Known Secondary structure 

GGG
SSTTTTGGGT


TT
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   239240.........250.........260.........270.........280.........290........
 
   296...300.........310.........320.........330.........340.........350.....
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Query Sequence  PNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE
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Template Sequence  PFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRK. . LPEEHARFYSAEISLALNYLH
Template Known Secondary structure  TTB


SS

TT
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   303......310.........320.........330......... 340.........350.........360
 
   356...360.........370.........380.........390.........400.........410.....
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Query Sequence  KKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNK
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Template Sequence  ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTST. FCGTPNYIAPEILRGED
Template Known Secondary structure  TT
B




GGG
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TT
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S
GGG

TT

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   361........370.........380.........390.........400.. .......410.........
 
   416...420.........430.........440.... .....450.........460.........470...
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Query Sequence  FSIKSDVWAFGVLLWEIATYGMSPYPGID. . LSQVYELLEKDYRMERPEGCPEKVYELMR
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Template Sequence  YGFSVDWWALGVLMFEMMA. GRSPFDIVGSNTEDYLFQVILEKQIRIPRSLSVKAASVLK
Template Known Secondary structure  B
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SSTTTT








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   420.........430........ .440.........450.........460.........470........
 
   474.....480.... .....490..
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Query Sequence  ACWQWNPSDRP. . . . . . SFAEIHQA
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Template Sequence  SFLNKDPKERLGCHPQTGFADIQGH
Template Known Secondary structure  T
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TTTSTT
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   485....490.........500.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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