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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank142Aligned Residues253
% Identity23%Templatec2y94A_
PDB info PDB header:transferaseChain: A: PDB Molecule:5'-amp-activated protein kinase catalytic subunit alpha-1; PDBTitle: structure of an active form of mammalian ampk
Resolution3.24 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   236...240.........250.........260.........270.........280 .........290.
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Query Sequence  EMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEV. . . . EEFLKEAAVMK
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Template Sequence  RVKIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLK
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TT

SSS
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TTTT
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   10.........20.........30.........40.........50.........60.........
 
   292.......300.........310.........320.........330.........340.........350.
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Query Sequence  EIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAM
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Template Sequence  LFRHPHIIKLYQVISTPSDIFMVMEYVSGGELFDYICK. . NGRLDEKESRRLFQQILSGV
Template Known Secondary structure  T


TTB


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   70.........80.........90.........100....... ..110.........120.......
 
   352.......360.........370.........380.........390.........400.........410.
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Query Sequence  EYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESL
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Template Sequence  DYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRSC. . GSPNYAAPEVIS
Template Known Secondary structure  TTT
S

SGGG
TT




SS


TT

B


..S
STT

T
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   128.130.........140.........150.........160.........170... ......180.....
 
   412.......420.........430.........440.........450.........460.........470.
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Query Sequence  AYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYEL
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Template Sequence  GRLYAGPEVDIWSSGVILYALLC. GTLPFDDDHVPTLFKKICDGI. FYTPQYLNPSVISL
Template Known Secondary structure  T

B
S.SS
SS

SSSTT
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TT

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   187..190.........200......... 210.........220.........230 .........240....
 
   472.......480.........490....
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Query Sequence  MRACWQWNPSDRPSFAEIHQAFE
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Template Sequence  LKHMLQVDPMKRATIKDIREHEW
Template Known Secondary structure  T
SSTTTS

T
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   245....250.........260.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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