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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank303Aligned Residues233
% Identity26%Templatec2xs0A_
PDB info PDB header:transcriptionChain: A: PDB Molecule:mitogen-activated protein kinase 8; PDBTitle: linear binding motifs for jnk and for calcineurin antagonistically2 control the nuclear shuttling of nfat4
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   240.........250.........260.........270.... .....280.........290......
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Query Sequence  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK. . . EDTMEVEEFLKEAAVMKEIKHP
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Template Sequence  KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHK
Template Known Secondary structure  TTTTTTTT
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T
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   24.....30.........40.........50.........60.........70.........80...
 
   297..300....... ..310.........320.........330.........340.........350
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Query Sequence  NLVQLLGVCTR. . . . . . EPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSA
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Template Sequence  NIIGLLNVFTPQKSLEEFQDVYIVMELMDANLCQVIQME. . . . . LDHERMSYLLYQMLCG
Template Known Secondary structure  TB


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   84.....90.........100.........110.........120.. .......130........
 
   351........360.........370.........380.........390.........400.........410
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Query Sequence  MEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPES
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Template Sequence  IKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLATR. . . . . . . . . . . . . . . . YYRAPEV
Template Known Secondary structure  TTT


S


GGG
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   139140.........150.........160.........170..... ....180..
 
   411........420.........430.........440.........450....
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Query Sequence  LAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK. . . . . . . . . . . . . . . .
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Template Sequence  ILGMGYKENVDIWSVGCIMGEMIK. GGVLFPGTDHIDQWNKVIEQLGTPCPEFMKKLQPT
Template Known Secondary structure  TT



TT.SS
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   197..200.........210.........220 .........230.........240.........250.....
 
   455....460.........470.........480.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . DYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEI
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Template Sequence  VRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEA
Template Known Secondary structure  TTSS






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   256...260.........270.........280.........290.........300.........310.....
 
   490....
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Query Sequence  HQAFE
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Template Conservation 
 

 
Template Sequence  LQHPY
Template Known Secondary structure  S
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   316...320
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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