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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank150Aligned Residues267
% Identity15%Templatec2kulA_
PDB info PDB header:transferaseChain: A: PDB Molecule:serine/threonine-protein kinase vrk1; PDBTitle: solution structure of human vaccinia related kinase 1(vrk1)
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   236...240.........250.........260...... ...270....... .
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Query Sequence  EMERTDITMKHKLGGGQYGEVYEGVWKKYSL. . . . . TVAVKTLKEDT. . . . . . . . . . . . M
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Template Sequence  DMAKKEWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRA
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TTS



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SS


SSSSTT
SS
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   31........40.........50.........60.........70.........80.........90
 
   279280.........290.........300...... ...310.........320.........330....
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Query Sequence  EVEEFLKEAAVMKEIKHPNLVQLLGVCT. . . . REPPFYIITEFMTYGNLLDYLRECNRQE
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Template Sequence  AKPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNGKSYRFMIMDRF. GSDLQKIYEANA. KR
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TT










TT
.TT.T
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   91........100.........110.........120.........130.... .....140...... ..
 
   335....340.........350.........360.........370........ .380.........390..
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Query Sequence  VSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVK. . VADFGLSRLMTGDT
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Template Sequence  FSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEG
Template Known Secondary structure 

TTTB

S


GGGTT

GGG

BSSSTT
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   149150.........160.........170.........180.........190.........200........
 
   393......400.........410.........420.........430.........440.....
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Query Sequence  . . . . . . YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL.
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Template Sequence  VHKEYKEDPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLT. GHLPWEDNLKD
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   209210.........220.........230.........240.........250...... ...260.......
 
   446...450.........460.........470.........480.........490......
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Query Sequence  . . . . . . . . . SQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETM
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Template Sequence  PKYVRDSKIRYRENIASLMDKCFPEKNKPGEIAKYMETVKLLDYTEKPLYENLRDILLQG
Template Known Secondary structure  TTTS
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   268.270.........280.........290.........300.........310.........320.......
 
   497..500.....
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Query Sequence  FQESSISDE
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Template Sequence  LKAIGSKDD
Template Known Secondary structure  TT
SST
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   328.330......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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