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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank262Aligned Residues237
% Identity28%Templatec4aguC_
PDB info PDB header:transferaseChain: C: PDB Molecule:cyclin-dependent kinase-like 1; PDBTitle: crystal structure of the human cdkl1 kinase domain
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   240.........250.........260.........270..... ....280.........290......
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Query Sequence  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE. . . DTMEVEEFLKEAAVMKEIKHP
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Template Sequence  EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHP
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   2.......10.........20.........30.........40.........50.........60.
 
   297..300.........310.........320.........330.........340.........350......
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Query Sequence  NLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEK
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Template Sequence  NLVNLLEVFRRKRRLHLVFEYCDHTVLHELDRY. . QRGVPEHLVKSITWQTLQAVNFCHK
Template Known Secondary structure  TB

TT

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   62.......70.........80.........90.... .....100.........110.........
 
   357..360.........370.........380.........390.........400.........410. ....
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Query Sequence  KNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESL. AYNK
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Template Sequence  HNCIHRDVKPENILITKHSVIKLCDFGFARLL. . . . . . . . . . . . . TRWYRSPELLVGDTQ
Template Known Secondary structure  TT



SGGG
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GGG

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   120.........130.........140.........150. ........160......
 
   416...420.........430.........440.........450.........460..
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Query Sequence  FSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPE. . . . . . . . . . . . .
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Template Sequence  YGPPVDVWAIGCVFAELLS. GVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSG
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   179180.........190....... ..200.........210.........220.........230.......
 
   463......470.........480.........490..
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Query Sequence  . . . . . . . . . . . . . . . . . GCPEKVYELMRACWQWNPSDRPSFAEIHQA
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Template Sequence  VKIPDPEDMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHH
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   238.240.........250.........260.........270.........280....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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