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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank208Aligned Residues224
% Identity27%Templatec2z7qA_
PDB info PDB header:transferaseChain: A: PDB Molecule:ribosomal protein s6 kinase alpha-1; PDBTitle: crystal structure of the n-terminal kinase domain of human rsk-1 bound2 to amp-pcp
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   237..240.........250.........260. ........270.........280.........290...
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Query Sequence  MERTDITMKHKLGGGQYGEVYEGVW. . . KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI
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Template Sequence  ADPSHFELLKVLGQGSFGKVFLVRKVTRPDSGHLYAMKVL. . . . . . . . . . . . . . . ILADV
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GGGTT
SSSSTT

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   57..60.........70.........80.........90...... ...100.
 
   294.....300.........310.........320.........330.........340.........350...
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Query Sequence  KHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEY
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Template Sequence  NHPFVVKLHYAFQTEGKLYLILDFLRGGDLFTRLSK. . EVMFTEEDVKFYLAELALGLDH
Template Known Secondary structure 

TTB

TT


TT
B..SS

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   120.........130.........140.........150..... ....160.........170.......
 
   354.....360.........370.........380.........390.........400.........410...
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Query Sequence  LEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAY
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Template Sequence  LHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKE. . . . . . . . . . . . . GTVEYMAPEVVNR
Template Known Secondary structure  TT


TT
SGGG
SSS

S


S

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GGG

TT
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   178.180.........190.........200.........210. ........220....
 
   414.....420.........430.........440.........450.........460.........470...
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Query Sequence  NKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMR
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Template Sequence  QGHSHSADWWSYGVLMFEMLT. GSLPFQGKDRKETMTLILKA. KLGMPQFLSTEAQSLLR
Template Known Secondary structure  S


.SS
SS

SST.




TTS
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   237..240.........250....... ..260.........270....... ..280.........290....
 
   474.....480... ......490..
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Query Sequence  ACWQWNPSDR. . . . . PSFAEIHQA
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Template Sequence  ALFKRNPANRLGSGPDGAEEIKRH
Template Known Secondary structure 

SSTTTSTTSSSSTTS
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   295....300.........310........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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