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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank320Aligned Residues240
% Identity24%Templatec3coiA_
PDB info PDB header:transferaseChain: A: PDB Molecule:mitogen-activated protein kinase 13; PDBTitle: crystal structure of p38delta kinase
Resolution2.09 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   235....240.........250.........260.........270.... .....280.........290.
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Query Sequence  WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK. . . EDTMEVEEFLKEAAVMK
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Template Sequence  WELP. KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLK
Template Known Secondary structure  .TT
SSTTTTSSTTSS
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   1920.. .......30.........40.........50.........60.........70.......
 
   292.......300........ .310.........320.........330.........340.....
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Query Sequence  EIKHPNLVQLLGVCTRE. . . . . . PPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMAT
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Template Sequence  HMQHENVIGLLDVFTPASSLRNFYDFYLVMPFMQTDLQKIMGLK. . . . . FSEEKIQYLVY
Template Known Secondary structure 


TTB


S
S
SSGGG





SGGGTTTS
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   78.80.........90.........100.........110.........120. ........130..
 
   346...350.........360.........370.........380.........390.........400.....
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Query Sequence  QISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKW
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Template Sequence  QMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHVVTRWY. . . . . . . . . . . R
Template Known Secondary structure  TT


SS

GGG
TT


STT
TT


SB

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   133......140.........150.........160.........170.........180 .
 
   406...410.........420.........430.........440.........450.........460.
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Query Sequence  TAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERP. . . .
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Template Sequence  APEVILSWMHYNQTVDIWSVGCIMAEMLT. GKTLFKGKDYLDQLTQILKVTGVPGTEFVQ
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S

S


TT.SS
SSBSS

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T
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   190.........200.........210........ .220.........230.........240........
 
   462.......470.........480.........490..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . EGCPEKVYELMRACWQWNPSDRPSFAEIHQA
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Template Sequence  KLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTH
Template Known Secondary structure  T
S
TS
B
SS

TTTT
TTS
S
S
TTTS

TS
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   249250.........260.........270.........280.........290.........300.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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