Return to main results Retrieve Phyre Job Id

Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank223Aligned Residues239
% Identity22%Templatec1ua2A_
PDB info PDB header:cell cycle, transferaseChain: A: PDB Molecule:cell division protein kinase 7; PDBTitle: crystal structure of human cdk7
Resolution3.02 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   243......250.........260.........270.........280.........290.........300..
Predicted Secondary structure 
















Query SS confidence 



























































Query Sequence  TMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL
Query Conservation       

 
 

 
           



              
      
 
 


   
Alig confidence 































......





















Template Conservation 
 
  

 
 

 

          



 
 ......     

 

  
 




 
 
Template Sequence  EKLDFLGEGQFATVYKARDKNTNQIVAIKKIN. . . . . . RTALREIKLLQELSHPNIIGLL
Template Known Secondary structure 
TT
SS

S

......T


TTB

Template Predicted Secondary structure 










......




Template SS confidence 



























































   13......20.........30.........40.... .....50.........60......
 
   303......310.........320.........330.........340.........350.........360..
Predicted Secondary structure 





















Query SS confidence 



























































Query Sequence  GVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHR
Query Conservation             
 
    
 
   
                  

   
  

    


Alig confidence 


























..






























Template Conservation             
 
      
      ..                   
           
Template Sequence  DAFGHKSNISLVFDFMETDLEVIIKDN. . SLVLTPSHIKAYMLMTLQGLEYLHQHWILHR
Template Known Secondary structure 

TT



STT
..
SS

SSTT



Template Predicted Secondary structure 













..












Template SS confidence 



























































   7980.........90.........100..... ....110.........120.........130......
 
   363......370.........380.........390.........400.........410 .........420.
Predicted Secondary structure 

























.





Query SS confidence 















































.










Query Sequence  DLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPES. LAYNKFSIKSD
Query Conservation 


  
 
       

 


 
                     


 .          
Alig confidence 




























..
















.










Template Conservation                      
        ..               
            
Template Sequence  DLKPNNLLLDENGVLKLADFGLAKSFGSP. . NRAYHQVVTRWYRAPELLFGARMYGVGVD
Template Known Secondary structure 


GGG
TT




GGGSTTTS
..









TT

TT
S


Template Predicted Secondary structure 






















..


















Template SS confidence 



























































   137..140.........150.........160..... ....170.........180.........190....
 
   422.......430.........440.........450.........460
Predicted Secondary structure 
















.....................
Query SS confidence 






































. . . . . . . . . . . . . . . . . . . . .
Query Sequence  VWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMER. . . . . . . . . . . . . . . . . . . . .
Query Conservation 


 
  
 
    
  
                     .....................
Alig confidence 












.
























.....................
Template Conservation    
 
    
   .
  
            
                             
Template Sequence  MWAVGCILAELLL. RVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPG
Template Known Secondary structure  .SS
SS

SS



TTTSSSTTSSTT








Template Predicted Secondary structure 



.



















Template SS confidence 



























































   196...200........ .210.........220.........230.........240.........250....
 
   461........470.........480.........490..
Predicted Secondary structure  ......









Query SS confidence  . . . . . .































Query Sequence  . . . . . . PEGCPEKVYELMRACWQWNPSDRPSFAEIHQA
Query Conservation  ......          
        
  

        
Alig confidence  ......































Template Conservation            
    


   
  

  


  


 
Template Sequence  IPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM
Template Known Secondary structure 


TT


SSTTTS

TS
Template Predicted Secondary structure 













Template SS confidence 





































   255....260.........270.........280.........290..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D