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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank252Aligned Residues234
% Identity24%Templatec2jc6C_
PDB info PDB header:transferaseChain: C: PDB Molecule:calcium/calmodulin-dependent protein kinase type 1d; PDBTitle: crystal structure of human calmodulin-dependent protein2 kinase 1d
Resolution2.3 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   235....240. ........250.........260.........270.........280.........290
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Query Sequence  WEMERTD. . . . ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM
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Template Sequence  WKKQAEDIKKIFEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKK. . . . ASIENEIAVL
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   12.......20.........30.........40.........50....... ..60.......
 
   291........300.........310.........320.........330.........340.........350
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Query Sequence  KEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSA
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Template Sequence  RKIKHENIVALEDIYESPNHLYLVMQLVSGGELFDRIVE. . KGFYTEKDASTLIRQVLDA
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   74.....80.........90.........100.........110.. .......120.........130.
 
   351........360.........370.........380.........390.........400.........410
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Query Sequence  MEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPES
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Template Sequence  VYYLHRMGIVHRDLKPENLLYYSQDEESKIM. . . . . . . . . . . . . . . . . . . ISPGYVAPEV
Template Known Secondary structure  TT






GGGSSSSTT

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   132.......140.........150.........160.. .......170..
 
   411........420.........430.........440.........450....... ..460.......
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Query Sequence  LAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYR. . . MERPEGCPEK
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Template Sequence  LAQKPYSKAVDCWSIGVIAYILLC. GYPPFYDENDSKLFEQILKAEYEFDSPYWDDISDS
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   193......200.........210...... ...220.........230.........240.........250.
 
   468.470.........480.........490....
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Query Sequence  VYELMRACWQWNPSDRPSFAEIHQAFE
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Template Sequence  AKDFIRNLMEKDPNKRYTCEQAARHPW
Template Known Secondary structure  S
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   252.......260.........270........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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