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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank298Aligned Residues231
% Identity26%Templatec3kn5B_
PDB info PDB header:transferaseChain: B: PDB Molecule:ribosomal protein s6 kinase alpha-5; PDBTitle: crystal structure of the c-terminal kinase domain of msk1 in complex2 with amp-pnp
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   229230.........240.........250.........260.........270.........280........
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Query Sequence  SPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAA
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Template Sequence  SPFYQHYDLDLKD. . . . KPLGEGSFSICRKCVHKKSNQAFAVKIISKRM. . EANTQKEIT
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   417..420......... 430.........440.........450.........460. ........470
 
   289290.... .....300.........310.........320.........330.........340.......
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Query Sequence  VMKEIK. HPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQI
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Template Sequence  ALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGELFERIKK. . KKHFSETEASYIMRKL
Template Known Secondary structure  TTT
TTB


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BT..
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   471........480.........490.........500.........510.. .......520........
 
   348.350.........360.........370.........380.........390.........400.......
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Query Sequence  SSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTA
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Template Sequence  VSAVSHMHDVGVVHRDLKPENLLF. TDLEIKIIDFGFARLKP. . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT




GGG.






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   529530.........540.........550.. .......560.........
 
   408.410.........420.........430.........440.... .....450..... ..
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Query Sequence  PESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID. . . . . . . LSQVYELLEKD. . . YR
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Template Sequence  . . . . . PNGYDESCDLWSLGVILYTMLS. GQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFE
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T.S

TT

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   574.....580.........590..... ....600.........610.........620.......
 
   458.460.........470.........480.........490..
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Query Sequence  MERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQA
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Template Sequence  GEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYN
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   650.........660.........670.........680....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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