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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank292Aligned Residues255
% Identity22%Templatec2vagA_
PDB info PDB header:transferaseChain: A: PDB Molecule:dual specificity protein kinase clk1; PDBTitle: crystal structure of di-phosphorylated human clk1 in2 complex with a novel substituted indole inhibitor
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   236...240.........250.........260. ........270.........280.........290....
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Query Sequence  EMERTDITMKHKLGGGQYGEVYEGVW. KKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIK
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Template Sequence  DVLSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLN
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TTTTTTTTTT
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   155....160.........170.........180.........190.........200.........210....
 
   295... .300.........310.........320.........330.........340........
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Query Sequence  HPNL. . . . . . VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQIS
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Template Sequence  TTDPNSTFRCVQMLEWFEHHGHICIVFELLGLSTYDFIKEN. GFLPFRLDHIRKMAYQIC
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TT
TT
B

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   215....220.........230.........240.........250..... ....260.........270...
 
   349350.........360.........370.........380.........390...... ..
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Query Sequence  SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAH. . . . . . . . . . AG
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Template Sequence  KSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNKRDERTLINPDIKVVDFGSATYDDEHH
Template Known Secondary structure  TT




GGGS





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   274.....280.........290.........300.........310.........320.........330...
 
   399400.........410.........420.........430.........440.........450....
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Query Sequence  AKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEK. . . .
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Template Sequence  STLVRHYRAPEVILALGWSQPCDVWSIGCILIEYYL. GFTVFPTHDSKEHLAMMERILGP
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   337..340.........350.........360.........370.. .......380.........390.....
 
   455....460.........470.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . DYRMERPEGCPEKVYELMRAC
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Template Sequence  LPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKM
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S
GGGTT


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GGGG
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   398.400.........410.........420.........430.........440.........450.......
 
   476...480.........490..
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Query Sequence  WQWNPSDRPSFAEIHQA
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Template Sequence  LEYDPAKRITLREALKH
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SSTTTS

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   458.460.........470....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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