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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank138Aligned Residues239
% Identity26%Templatec2h6dA_
PDB info PDB header:signaling protein,transferaseChain: A: PDB Molecule:5'-amp-activated protein kinase catalytic subunit PDBTitle: protein kinase domain of the human 5'-amp-activated protein2 kinase catalytic subunit alpha-2 (ampk alpha-2 chain)
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   237..240.........250.........260.........270......... 280.........290..
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Query Sequence  MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME. . . . VEEFLKEAAVMKE
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Template Sequence  VKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKL
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TT
SSTTT

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   11........20.........30.........40.........50.........60.........70
 
   293......300.........310.........320.........330.........340.........350..
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Query Sequence  IKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAME
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Template Sequence  FRHPHIIKLYQVISTPTDFFMVMEYVSGGELFDYICKHGR. . VEEMEARRLFQQILSAVD
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   71........80.........90.........100.........110 .........120........
 
   353......360.........370.........380.........390.........400.........410..
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Query Sequence  YLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLA
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Template Sequence  YCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMS. . . . . . . . . . . . . . . DAAPEVIS
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GGG
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   129130.........140.........150.........160..... ....170...
 
   413.. ....420.........430.........440.........450.........460.........470.
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Query Sequence  YNK. FSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYEL
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Template Sequence  GRLYAGPEVDIWSCGVILYALLC. GTLPFDDEHVPTLFKKIRGG. VFYIPEYLNRSVATL
Template Known Secondary structure  TS


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   187..190.........200......... 210.........220......... 230.........240....
 
   472.......480.........490....
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Query Sequence  MRACWQWNPSDRPSFAEIHQAFE
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Template Sequence  LMHMLQVDPLKRATIKDIREHEW
Template Known Secondary structure  T
SSGGGS

S
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   245....250.........260.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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