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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank123Aligned Residues251
% Identity20%Templatec1kobB_
PDB info PDB header:kinaseChain: B: PDB Molecule:twitchin; PDBTitle: twitchin kinase fragment (aplysia), autoregulated protein2 kinase domain
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   240.........250.........260.........270... ......280.........290........
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Query Sequence  TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTL. KEDTMEVEEFLKEAAVMKEIKHPNL
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Template Sequence  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKL
Template Known Secondary structure  GTTTTTT



STT

STTB
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   51........60.........70.........80.........90.........100.........110
 
   299300.........310.........320.........330.........340.........350........
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Query Sequence  VQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKN
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Template Sequence  INLHDAFEDKYEMVLILEFLSGGELFDRIAA. EDYKMSEAEVINYMRQACEGLKHMHEHS
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BTT
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   111........120.........130.........140. ........150.........160.........
 
   359360.........370.. .......380.........390.........400.........410......
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Query Sequence  FIHRDLAARNCLVG. . ENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKF
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Template Sequence  IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVT. . TATAEFAAPEIVDREPV
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GGGSSTT
S



TT


TTS..
TTGGG

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B
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   170.........180.........190.........200.........210 .........220.......
 
   417..420.........430.........440.........450....... ..460.........470...
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Query Sequence  SIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYR. . . MERPEGCPEKVYELMR
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Template Sequence  GFYTDMWAIGVLGYVLLS. GLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIK
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.S

TT

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TTTTTTS
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   228.230.........240..... ....250.........260.........270.........280......
 
   474.....480.........490....
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Query Sequence  ACWQWNPSDRPSFAEIHQAFE
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Template Sequence  NLLQKEPRKRLTVHDALEHPW
Template Known Secondary structure  TTS
SSGGGS

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   287..290.........300.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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