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Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank224Aligned Residues246
% Identity25%Templatec3a60B_
PDB info PDB header:transferaseChain: B: PDB Molecule:ribosomal protein s6 kinase beta-1; PDBTitle: crystal structure of unphosphorylated p70s6k1 (form i)
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   236...240.........250.........260 .........270.........280.........290..
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Query Sequence  EMERTDITMKHKLGGGQYGEVYEGV. . . WKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKE
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Template Sequence  KIRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLK. . . . . . . . . . . . . . . . . .
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   85....90.........100.........110.........120......
 
   293......300.........310.........320.........330.........340.........350..
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Query Sequence  IKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAME
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Template Sequence  KKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLER. . EGIFMEDTACFYLAEISMALG
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TTB


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TTTTS..T


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   127..130.........140.........150.........160... ......170.........180....
 
   353......360.........370.........380.........390.........400.........410..
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Query Sequence  YLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLA
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Template Sequence  HLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCK. . . . . . . . . . . ESCGTIEYMAPEILM
Template Known Secondary structure  TT
S


GGG

TT

B


TT
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   208.210.........220.........230.........240. ........250......
 
   413......420.........430.........440.........450.........460.........470..
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Query Sequence  YNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELM
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Template Sequence  RSGHNRAVDWWSLGALMYDMLT. GAPPFTGENRKKTIDKILK. CKLNLPPYLTQEARDLL
Template Known Secondary structure  TTTSST.SS
TT

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SSS
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   267..270.........280........ .290.........300....... ..310.........320....
 
   473......480..... ....490.........500.........510.........520.
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Query Sequence  RACWQWNPSDRPS. . . . . FAEIHQAFETMFQESSISDEVEKELGKRGTRGGAGS
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Template Sequence  KKLLKRNAASRLGAGPGDAGEVQAH. . . . . . . PFFRHINWEELLARKVEPPFKP
Template Known Secondary structure  S
S
TTTSTT
STTTTS.......GGGTT

TT
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   325....330.........340......... 350.........360.........370.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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