Return to main results Retrieve Phyre Job Id

Job DescriptionP00520
Confidence100.00%DateWed Jul 10 14:19:35 BST 2013
Rank44Aligned Residues256
% Identity22%Templatec4dn5A_
PDB info PDB header:transferaseChain: A: PDB Molecule:mitogen-activated protein kinase kinase kinase 14; PDBTitle: crystal structure of nf-kb-inducing kinase (nik)
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   228.230.........240.........250.........260.........270.........280.......
Predicted Secondary structure 






















Query SS confidence 



























































Query Sequence  VSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEA
Query Conservation                      

 
 

 
           



              
 
Alig confidence 




















































....


Template Conservation                      

 
 

 

          



         .... 
 
Template Sequence  LKPVDYEYREEVHWATHQLRLGRGSFGEVHRMEDKQTGFQCAVKKVRLEVFRA. . . . EEL
Template Known Secondary structure  S

BTTB

BTTT
SS
S
SS
TTT

TTT

T....
Template Predicted Secondary structure 

















....
Template SS confidence 



























































   386...390.........400.........410.........420.........430........ .440.
 
   288.290.........300.........310.........320.........330.........340.......
Predicted Secondary structure 




















Query SS confidence 



























































Query Sequence  AVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQI
Query Conservation       
 
 


              
 
    
 
   
                  

Alig confidence 









































..















Template Conservation    
  
 




 
           

 
    
 
      ..   
           
Template Sequence  MACAGLTSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLVKE. . QGCLPEDRALYYLGQA
Template Known Secondary structure  TTSS


TTB

TT


TT
B..SS

Template Predicted Secondary structure 


















..




Template SS confidence 



























































   442.......450.........460.........470.........480... ......490.........
 
   348.350.........360.........370...... ...380.........390.........400......
Predicted Secondary structure 












.

















Query SS confidence 




























.





























Query Sequence  SSAMEYLEKKNFIHRDLAARNCLVGENHL. VKVADFGLSRLMTGDTYTAHAGAKFPIKWT
Query Conservation     
  

    





  
 
      . 

 


 
                     
Alig confidence 




























.













.........






Template Conservation    

  

   
 
 


  



          
   
     .........       
Template Sequence  LEGLEYLHSRRILHGDVKADNVLLSSDGSHAALCDFGHAVCLQI. . . . . . . . . PGTETHM
Template Known Secondary structure  TT
S

SGGG
TTS




TT



.........
S
GGG
Template Predicted Secondary structure 



















.........






Template SS confidence 



























































   500.........510.........520.........530.........540... ......550
 
   407..410.........420.........430.........440.........450...... ...460....
Predicted Secondary structure 



















..







Query SS confidence 

















































. .







Query Sequence  APESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDY. . RMERPEGC
Query Conservation 


           



 
  
 
    
  
                 ..        
Alig confidence 



























.




















..







Template Conservation   

           








 

 
.
  

           
              
Template Sequence  APEVVLGRSCDAKVDVWSSCCMMLHMLN. GCHPWTQFFRGPLCLKIASEPPPVREIPPSC
Template Known Secondary structure 
TT



T.SS
TTTTT

S

S

GGGGS
TTS
Template Predicted Secondary structure 









.



















Template SS confidence 



























































   564.....570.........580.........590. ........600.........610.........620..
 
   465....470.........480.........490.........
Predicted Secondary structure 





Query SS confidence 


































Query Sequence  PEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE
Query Conservation        
        
  

               
Alig confidence 


































Template Conservation     
  

  

  

  


  

   
  

  
Template Sequence  APLTAQAIQEGLRKEPIHRVSAAELGGKVNRALQQ
Template Known Secondary structure 
S
SSTTSS

Template Predicted Secondary structure 







Template SS confidence 


































   623......630.........640.........650.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D