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Job DescriptionA2A3V1
Confidence96.99%DateTue Jul 30 13:01:13 BST 2013
Rank2Aligned Residues124
% Identity27%Templatec2i38A_
PDB info PDB header:rna binding protein/chimeraChain: A: PDB Molecule:fusion protein consists of immunoglobin g- PDBTitle: solution structure of the rrm of srp20
ResolutionUNK
Model Dimensions (Å)X:65.704 Y:45.235 Z:41.745

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   95....100.........110..... ....120.........130.........140...
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Query Sequence  LHGKIIKLNGLKTDLKVVATD. . . . . . . . . . . AQGEWEHFPKEKEASVIEGAEEQDHDKG
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Template Sequence  LNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMH
Template Known Secondary structure  SSS
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   7..10.........20.........30.........40.........50.........60......
 
   144.. ...150.........160.........170.........180.........190.......
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Query Sequence  PDS. . . . . . IYFEGLPCKWFAPKGSSGEKPCEEILRVVFESFGKIKNVDIPMLDPYREVM
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Template Sequence  RDSCPLDCKVYVGNLGNNG. . . . . . . . . . . NKTELERAFGYYGPLRSVWVA. . . . . . . . .
Template Known Secondary structure  SSSSSSSSS

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   67..70.........80..... ....90.........100......
 
   198.200.........210.........220.........230.........240.........250.......
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Query Sequence  TGGSFGGLNFGLQTFEAFIQYQESTDFIKAMESLRGMKLMLKGDDGKALACNIKVMFDTT
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Template Sequence  . . . . . . RNPPGF. . . . AFVEFEDPRDAADAVRDLDGRTLCGC. . . . . . . . . RVRVELSNG
Template Known Secondary structure  ......SSSTT....
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   107..110.. .......120.........130........ .140.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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