Return to main results Retrieve Phyre Job Id

Job DescriptionA2A3V1
Confidence95.80%DateTue Jul 30 13:01:13 BST 2013
Rank30Aligned Residues76
% Identity16%Templatec2do0A_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein m; PDBTitle: solution structure of the rna binding domain of2 heterogeneous nuclear ribonucleoprotein m
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   136...140.........150.........160.........170.........180.........190.....
Predicted Secondary structure 
































Query SS confidence 



























































Query Sequence  EEQDHDKGPDSIYFEGLPCKWFAPKGSSGEKPCEEILRVVFESFGKIKNVDIPMLDPYRE
Query Conservation                                                              
Alig confidence 




















...........



























Template Conservation 
          
 
 


   ...........

  
   
   
 
             
Template Sequence  GALQAGRLGSTVFVANLDYKV. . . . . . . . . . . GWKKLKEVFSMAGVVVRADILEDKDGKS
Template Known Secondary structure 








S
S

TT
...........
TTTS

TT
S
Template Predicted Secondary structure 
















...........

















Template SS confidence 



























































   194.....200.........210.... .....220.........230.........240..
 
   196...200.........210.........220.........230.......
Predicted Secondary structure 
















Query SS confidence 









































Query Sequence  VMTGGSFGGLNFGLQTFEAFIQYQESTDFIKAMESLRGMKLM
Query Conservation                                            
Alig confidence 
...............

























Template Conservation   ...............
 


 
     
  

  
 
    
Template Sequence  R. . . . . . . . . . . . . . . GIGTVTFEQSIEAVQAISMFNGQLLF
Template Known Secondary structure  ...............SSTT
T
Template Predicted Secondary structure 
...............





Template SS confidence 









































   243 ......250.........260.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D