Return to main results Retrieve Phyre Job Id

Job DescriptionA2A3V1
Confidence93.11%DateTue Jul 30 13:01:13 BST 2013
Rank153Aligned Residues77
% Identity23%Templatec2dhsA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:cug triplet repeat rna-binding protein 1; PDBTitle: solution structure of nucleic acid binding protein cugbp1ab2 and its binding study with dna and rna
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   136...140..... ....150.........160.........170.........180.........190.
Predicted Secondary structure 







....























Query SS confidence 









. . . .













































Query Sequence  EEQDHDKGPD. . . . SIYFEGLPCKWFAPKGSSGEKPCEEILRVVFESFGKIKNVDIPMLD
Query Conservation            ....                                              
Alig confidence 









....










...........























Template Conservation 
             







   ...........

  
   
   
 
         
Template Sequence  GTLDHPDQPDLDAIKMFVGQVPRTW. . . . . . . . . . . SEKDLRELFEQYGAVYEINVLRDR
Template Known Secondary structure 


S
SS




S
S



S...........
TTS

ST
Template Predicted Secondary structure 




















...........







Template SS confidence 



























































   3......10.........20....... ..30.........40.........50.
 
   192.......200.........210.........220.........230.....
Predicted Secondary structure 

















Query SS confidence 











































Query Sequence  PYREVMTGGSFGGLNFGLQTFEAFIQYQESTDFIKAMESLRGMK
Query Conservation                                              
Alig confidence 




............


























Template Conservation       ............         
        
        
Template Sequence  SQNPP. . . . . . . . . . . . QSKGCCFVTFYTRKAALEAQNALHNMK
Template Known Secondary structure  T
SSS............



S
SSSS
Template Predicted Secondary structure 



............









Template SS confidence 











































   52.... ...60.........70.........80...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D