Return to main results Retrieve Phyre Job Id

Job DescriptionA2A3V1
Confidence95.03%DateTue Jul 30 13:01:13 BST 2013
Rank78Aligned Residues83
% Identity22%Templatec3cw18_
PDB info PDB header:splicingChain: 8: PDB Molecule:u1 small nuclear ribonucleoprotein 70 kda;PDB Fragment:nucleotides 57-82 absent, replaced with kissing loop; PDBTitle: crystal structure of human spliceosomal u1 snrnp
Resolution5.49 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   140.........150.........160.........170.........180.........190.........
Predicted Secondary structure 

































Query SS confidence 



























































Query Sequence  HDKGPDSIYFEGLPCKWFAPKGSSGEKPCEEILRVVFESFGKIKNVDIPMLDPYREVMTG
Query Conservation                                                              
Alig confidence 













...........
































..
Template Conservation         
 
 


...........   
   
   
   
 
               ..
Template Sequence  ELKMWKTLFVARVN. . . . . . . . . . . YDTTESKLRREFEVYGPIKRIHMVYSKRSGKPR. .
Template Known Secondary structure  GGG






B


...........TT

TTS

SSS
S..
Template Predicted Secondary structure 









...........


















..
Template SS confidence 



























































   685....690........ .700.........710.........720.........730.
 
   200.........210.........220.........230.........240.........250......
Predicted Secondary structure 

















Query SS confidence 
























































Query Sequence  GSFGGLNFGLQTFEAFIQYQESTDFIKAMESLRGMKLMLKGDDGKALACNIKVMFDT
Query Conservation                                                    


 

 
Alig confidence  ............



























.........







Template Conservation  ............
 


 
   
 
  

  


  
 

......... 
 

  
Template Sequence  . . . . . . . . . . . . GYAFIEYEHERDMHSAYKHADGKKIDGR. . . . . . . . . RVLVDVER
Template Known Secondary structure  ............SSTTSSS
.........B




Template Predicted Secondary structure  ............







.........
Template SS confidence 
























































   745....750.........760.........770.. .......780
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D