Return to main results Retrieve Phyre Job Id

Job DescriptionA2A3V1
Confidence95.72%DateTue Jul 30 13:01:13 BST 2013
Rank33Aligned Residues85
% Identity20%Templatec3pgwS_
PDB info PDB header:splicing/dna/rnaChain: S: PDB Molecule:u1-70k; PDBTitle: crystal structure of human u1 snrnp
Resolution4.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   140.........150.........160.........170.........180.........190.........
Predicted Secondary structure 

































Query SS confidence 



























































Query Sequence  HDKGPDSIYFEGLPCKWFAPKGSSGEKPCEEILRVVFESFGKIKNVDIPMLDPYREVMTG
Query Conservation                                                              
Alig confidence 













...........
































..
Template Conservation         


 


...........   

  
   
   
 
               ..
Template Sequence  QGDAFKTLFVARVN. . . . . . . . . . . YDTTESKLRREFEVYGPIKRIHMVYSKRSGKPR. .
Template Known Secondary structure  S

SS





...........SS

S
B




SS
SS..
Template Predicted Secondary structure 








...........



















..
Template SS confidence 



























































   98.100.........110. ........120.........130.........140....
 
   200.........210.........220.........230.........240.........250........
Predicted Secondary structure 


















Query SS confidence 


























































Query Sequence  GSFGGLNFGLQTFEAFIQYQESTDFIKAMESLRGMKLMLKGDDGKALACNIKVMFDTTK
Query Conservation                                                    


 

  
Alig confidence  ............



























.........









Template Conservation  ............
 


 
   
 
  

   

  
 

......... 
 
      
Template Sequence  . . . . . . . . . . . . GYAFIEYEHERDMHSAYKHADGKKIDGR. . . . . . . . . RVLVDVERGR
Template Known Secondary structure  ............

BSS
SSTT.........


SS
Template Predicted Secondary structure  ............







.........


Template SS confidence 


























































   145....150.........160.........170.. .......180..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D