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Job DescriptionA2A3V1
Confidence92.31%DateTue Jul 30 13:01:13 BST 2013
Rank171Aligned Residues66
% Identity20%Templatec3b4mD_
PDB info PDB header:rna binding proteinChain: D: PDB Molecule:polyadenylate-binding protein 2; PDBTitle: crystal structure of human pabpn1 rrm
Resolution2.82 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   146...150.........160.........170.........180.........190.........200.....
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Query Sequence  SIYFEGLPCKWFAPKGSSGEKPCEEILRVVFESFGKIKNVDIPMLDPYREVMTGGSFGGL
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Template Sequence  SIYVGNVD. . YGAT. . . . . . . . . AEELEAHFHGCGSVNRVTILCDKFSGHPK. . . . . . . .
Template Known Secondary structure  S

..TT

.........GGG

S
SSSS

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   173......180 .... .....190.........200.........210...
 
   206...210.........220.........230.......
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Query Sequence  NFGLQTFEAFIQYQESTDFIKAMESLRGMKLM
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Template Sequence  . . . . . . GFAYIEFSDKESVRTSL. ALDESLFR
Template Known Secondary structure  ......SSSG.GGTT
T
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   214.....220.........230 ........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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