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Job Description | A2A3V1 | Confidence | 92.31% | Date | Tue Jul 30 13:01:13 BST 2013 |
Rank | 171 | Aligned Residues | 66 |
% Identity | 20% | Template | c3b4mD_ |
PDB info |
PDB header:rna binding protein | Chain: D: PDB Molecule:polyadenylate-binding protein 2; |
PDBTitle: crystal structure of human pabpn1 rrm
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Resolution | 2.82 Å |
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146 | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
S | I | Y | F | E | G | L | P | C | K | W | F | A | P | K | G | S | S | G | E | K | P | C | E | E | I | L | R | V | V | F | E | S | F | G | K | I | K | N | V | D | I | P | M | L | D | P | Y | R | E | V | M | T | G | G | S | F | G | G | L |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
S | I | Y | V | G | N | V | D | . |
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A | E | E | L | E | A | H | F | H | G | C | G | S | V | N | R | V | T | I | L | C | D | K | F | S | G | H | P | K | . |
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Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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173 | . | . | . | . | . | . | 180 | |
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206 | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
N | F | G | L | Q | T | F | E | A | F | I | Q | Y | Q | E | S | T | D | F | I | K | A | M | E | S | L | R | G | M | K | L | M |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
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G | F | A | Y | I | E | F | S | D | K | E | S | V | R | T | S | L | . |
A | L | D | E | S | L | F | R |
Template Known Secondary structure |   |
. | . | . | . | . | . |  |  |  |  |  |  |  | S | S | S |  |  |  |  |  |  | G | . | G | G | T | T |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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214 | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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Phyre2 is part of Genome3D |
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