 |
Job Description | A2A3V1 | Confidence | 93.04% | Date | Tue Jul 30 13:01:13 BST 2013 |
Rank | 155 | Aligned Residues | 60 |
% Identity | 27% | Template | c2hvzA_ |
PDB info |
PDB header:rna binding protein | Chain: A: PDB Molecule:splicing factor, arginine/serine-rich 7; |
PDBTitle: solution structure of the rrm domain of sr rich factor 9g8
|
Resolution | UNK |
|
 |
  |   |
147 | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | Y | F | E | G | L | P | C | K | W | F | A | P | K | G | S | S | G | E | K | P | C | E | E | I | L | R | V | V | F | E | S | F | G | K | I | K | N | V | D | I | P | M | L | D | P | Y | R | E | V | M | T | G | G | S | F | G | G | L | N |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
| . | . |
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
| . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
|
|
|   |
|
|   | . | . |   |   |   |
| . | . | . | . | . | . | . | . | . |
|   |   |
|   |   |   |
|   |   |   |
|   |
|   |   |   |   |   |   | . | . | . | . |   |   |   |   | . | . | . | . | . | . | . | . | . | . |
Template Sequence |   |
V | Y | V | G | N | L | G | . |
. |
T | G | A | G | . |
. |
. |
. |
. |
. |
. |
. |
. |
K | G | E | L | E | R | A | F | S | Y | Y | G | P | L | R | T | V | W | I | A | . |
. |
. |
. |
R | N | P | P | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Template Known Secondary structure |   |
 |  |  |  |
|
|
| . | . | S | S |
| S | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
| S |  |  |  |  |  | . | . | . | . | S | S | S | S | . | . | . | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
| . | . |
|
|
|
| . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
| . | . | . | . | . | . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | |
|
10 | . | . | . | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | |
|
|
|
. | . | . | . | |
|
|
|
|
|
|
|
|
|
  |
  |   |
207 | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
F | G | L | Q | T | F | E | A | F | I | Q | Y | Q | E | S | T | D | F | I | K | A | M | E | S | L | R | G | M | K | L |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . |   |   |
|
|
|   |
|   |   |   |   |   |
|   |   |
|
|   |   |   |   |
|   |   |
|
Template Sequence |   |
. |
. |
. |
. |
. |
G | F | A | F | V | E | F | E | D | P | R | D | A | E | D | A | V | R | G | L | D | G | K | V | I |
Template Known Secondary structure |   |
. | . | . | . | . | S |  |  |  |  |  |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | S |
| S |
Template Predicted Secondary structure |   |
. | . | . | . | . |
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
38 | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
Phyre2 is part of Genome3D |
|