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Job DescriptionA2A3V1
Confidence69.52%DateTue Jul 30 13:01:13 BST 2013
Rank226Aligned Residues452
% Identity7%Templatec1ciiA_
PDB info PDB header:transmembrane proteinChain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   400.........410.........420.........430.........440.........450.........
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Query Sequence  QCNPQEVGVMKSEAHHTPGTALKSPEEEELNTRHLLDWEEMPSYQASTLDLSQKAEKRCY
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Template Conservation 
 


    

  

  
    

 
    
                     
      
Template Sequence  RSDIEKRDKEITAYKNTLSAQQKENENKRTEAGKRLSAAIAAREKDENTLKTLRAGNADA
Template Known Secondary structure  TT

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   67..70.........80.........90.........100.........110.........120......
 
   460.. .......470.........480.........490.........500.........510........
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Query Sequence  QAS. KSDNKQKQKGKKKTKAQLQKSSHTPGVKQMRHSARKEETGKVLSDGCDYSLVSDQN
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Template Conservation            
           
        
      
      
     
        
Template Sequence  ADITRQEFRLLQAELREYGFRTEIAGYDALRLHTESRMLFADADSLRISPREARSLIEQA
Template Known Secondary structure  TT
SSS
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   127..130.........140.........150.........160.........170.........180......
 
   519520.........530.........540.........550.........560.........570........
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Query Sequence  SLQSTMIADQSLAKEDHASSNESHSSRQAVINRGRKQKIYETDEFIDYLLNYYQTPEYAR
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Template Conservation               
     


            
                 
       
Template Sequence  EKRQKDAQNADKKAADMLAEYERRKGILDTRLSELEKNGGAALAVLDAQQARLLGQQTRN
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   187..190.........200.........210.........220.........230.........240......
 
   579580.........590.........600.........610.........620.........630........
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Query Sequence  FCLEASHLTSTCQWQRDVYAKGDGFQIYLRKQGYHSNSLSEEESLQGIEQDEEQDWPQVY
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Template Conservation     
      
      
      
      
      
                     
Template Sequence  DRAISEARNKLSSVTESLNTARNALTRAEQQLTQQKNTPDGKTIVSPEKFPGRSSTNDSI
Template Known Secondary structure  SS
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   247..250.........260.........270.........280.........290.........300......
 
   639640.........650.........660.........670.........680.........690........
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Query Sequence  IKDPESKSQKTGKINYAKEFTKKLKNHCKDIASETDEHLSPTDGESYPVEKIHSHGVKDS
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Template Conservation                                           
                  
Template Sequence  VVSGDPRFAGTIKITTSAVIDNRANLNYLLSHSGLDYKRNILNDRNPVVTEDVEGDKKIY
Template Known Secondary structure 

S
TTT
S

TS
TS



S

SS
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   307..310.........320.........330.........340.........350.........360......
 
   699700.........710.........720.........730.........740.........750........
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Query Sequence  QHIRKSPVSSSLRSVDVGLPLADFLEEISSDSECFSETLSMNQEEEERSMAVYNSSPEKR
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Template Sequence  NAEVAEWDKLRQRLLDARNKITSAESAVNSARNN. . . . LSARTNEQKHANDALNALLKEK
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   367..370.........380.........390.........400 .........410.........420..
 
   759760.........770.........780.........790.........800.........810........
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Query Sequence  PLGTDKISTCKQKTKSSQQTLCSEWKHDNEGKYSKHRVRAPGKRSKSELRYSWLEEEGDS
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Template Conservation 
 
   
  
            
                            
  

    
Template Sequence  ENIRNQLSGINQKIAEEKRKQDELKATKDAINFTTEFLKSVSEKYGAKAEQLAREMAGQA
Template Known Secondary structure 
TTT
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   423......430.........440.........450.........460.........470.........480..
 
   819820.........830.........840.........850.....
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Query Sequence  IRVDKNISKTRGKLAPKHMLDEGQYHESSSSDELEST
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Template Conservation    
 
          

    
  
    

      
Template Sequence  KGKKIRNVEEALKTYEKYRADINKKINAKDRAAIAAA
Template Known Secondary structure  TT
B


TTTSS
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   483......490.........500.........510.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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