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Job Description | A2A3V1 | Confidence | 95.03% | Date | Tue Jul 30 13:01:13 BST 2013 |
Rank | 78 | Aligned Residues | 83 |
% Identity | 22% | Template | c3cw18_ |
PDB info |
PDB header:splicing | Chain: 8: PDB Molecule:u1 small nuclear ribonucleoprotein 70 kda; | PDB Fragment:nucleotides 57-82 absent, replaced with kissing loop;
PDBTitle: crystal structure of human spliceosomal u1 snrnp
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Resolution | 5.49 Å |
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140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
H | D | K | G | P | D | S | I | Y | F | E | G | L | P | C | K | W | F | A | P | K | G | S | S | G | E | K | P | C | E | E | I | L | R | V | V | F | E | S | F | G | K | I | K | N | V | D | I | P | M | L | D | P | Y | R | E | V | M | T | G |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
E | L | K | M | W | K | T | L | F | V | A | R | V | N | . |
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Y | D | T | T | E | S | K | L | R | R | E | F | E | V | Y | G | P | I | K | R | I | H | M | V | Y | S | K | R | S | G | K | P | R | . |
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Template Known Secondary structure |   |
G | G | G |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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685 | . | . | . | . | 690 | . | . | . | . | . | . | . | . | |
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. | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | |
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200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
G | S | F | G | G | L | N | F | G | L | Q | T | F | E | A | F | I | Q | Y | Q | E | S | T | D | F | I | K | A | M | E | S | L | R | G | M | K | L | M | L | K | G | D | D | G | K | A | L | A | C | N | I | K | V | M | F | D | T |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
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G | Y | A | F | I | E | Y | E | H | E | R | D | M | H | S | A | Y | K | H | A | D | G | K | K | I | D | G | R | . |
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R | V | L | V | D | V | E | R |
Template Known Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  | S | S | S |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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745 | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . | . | . | 770 | . | . | |
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. | . | . | . | . | . | . | 780 |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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Phyre2 is part of Genome3D |
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