 |
Job Description | A2A3V1 | Confidence | 92.42% | Date | Tue Jul 30 13:01:13 BST 2013 |
Rank | 166 | Aligned Residues | 80 |
% Identity | 26% | Template | d1a9nb_ |
SCOP info | Ferredoxin-like
| RNA-binding domain, RBD
| Canonical RBD
|
Resolution | 2.38 |
|
 |
  |   |
146 | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | I | Y | F | E | G | L | P | C | K | W | F | A | P | K | G | S | S | G | E | K | P | C | E | E | I | L | R | V | V | F | E | S | F | G | K | I | K | N | V | D | I | P | M | L | D | P | Y | R | E | V | M | T | G | G | S | F | G | G | L |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
| . |
Template Conservation |   |
|
|   |
|   |
|
|   |   |   |
|
|
|   | . | . | . | . | . | . | . |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |
|   |   |
|   |   |   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   | . |
Template Sequence |   |
T | I | Y | I | N | N | M | N | D | K | I | K | K | E | . |
. |
. |
. |
. |
. |
. |
E | L | K | R | S | L | Y | A | L | F | S | Q | F | G | H | V | V | D | I | V | A | L | . |
. |
. |
. |
. |
. |
. |
. |
K | T | M | K | M | R | G | Q | . |
Template Known Secondary structure |   |
 |  |  |  |  | S |
|
| T | T | S |
|  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  | T | T | S |
|  |  |  |  |  |
|
| . | . | . | . | . | . | . | . |
| S | T | T | T | T | T |
| . |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|  | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
11 | . | . | . | . | . | . | . | . | 20 | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | 50 | . | . | . | . | |
  |
  |   |
206 | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | F | G | L | Q | T | F | E | A | F | I | Q | Y | Q | E | S | T | D | F | I | K | A | M | E | S | L | R | G | M | K | L | M | L | K | G | D | D | G | K | A | L | A | C | N | I | K | V | M | F | D | T | T | K |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|
|   |   |
|
Alig confidence |   |
. | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . | . | . |
|
|
|   |
|   |   |   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |
|
| . | . | . | . | . | . | . | . | . |   |
|   |
|   |   |
|
|   |   |
Template Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
A | F | V | I | F | K | E | L | G | S | S | T | N | A | L | R | Q | L | Q | G | F | P | F | Y | G | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
P | M | R | I | Q | Y | A | K | T | D |
Template Known Secondary structure |   |
. | . | . | . | . | . | . | . |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  | S | T | T |
|  |  | T | T |  | . | . | . | . | . | . | . | . | . |  |
|  |  |  |  |
| S | S |
|
Template Predicted Secondary structure |   |
. | . | . | . | . | . | . | . |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |
|
|  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
|
|
55 | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 90 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
Phyre2 is part of Genome3D |
|