Return to main results Retrieve Phyre Job Id

Job DescriptionA2A3V1
Confidence96.14%DateTue Jul 30 13:01:13 BST 2013
Rank15Aligned Residues83
% Identity17%Templated2cq1a1
SCOP infoFerredoxin-like RNA-binding domain, RBD Canonical RBD
ResolutionUNK
Model Dimensions (Å)X:37.626 Y:41.269 Z:29.761

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   140.........150.........160.........170.........180.........190.........
Predicted Secondary structure 

































Query SS confidence 



























































Query Sequence  HDKGPDSIYFEGLPCKWFAPKGSSGEKPCEEILRVVFESFGKIKNVDIPMLDPYREVMTG
Query Conservation                                                              
Alig confidence 
















...........




















.....


...
Template Conservation     

 

 
 


   ...........
   
   
   
 
  
   .....  
...
Template Sequence  DGAPSRVLHIRKLPGEV. . . . . . . . . . . TETEVIALGLPFGKVTNILML. . . . . KGK. . .
Template Known Secondary structure 
SS

SS

TT
...........
TTTTTS
.....TTT...
Template Predicted Secondary structure 












...........









.....

...
Template SS confidence 



























































   54.....60.........70 .........80.........90. ...
 
   200.........210.........220.........230.........240.........250.........
Predicted Secondary structure 



















Query SS confidence 



























































Query Sequence  GSFGGLNFGLQTFEAFIQYQESTDFIKAMESLRGMKLMLKGDDGKALACNIKVMFDTTKH
Query Conservation                                                    


 

  
 
Alig confidence  ............






























.......









Template Conservation  ............  




     
  

         
 
  .......
 
  
    
Template Sequence  . . . . . . . . . . . . NQAFLELATEEAAITMVNYYSAVTPHLRNQP. . . . . . . IYIQYSNHKE
Template Known Secondary structure  ............TSSS

TT.......

S
SS
Template Predicted Secondary structure  ............








.......




Template SS confidence 



























































   95....100.........110.........120..... ....130.....
 
   260
Predicted Secondary structure 
Query SS confidence 
Query Sequence  F
Query Conservation   
Alig confidence 
Template Conservation 
Template Sequence  L
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 
   136
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D