Return to main results Retrieve Phyre Job Id

Job DescriptionA2A3V1
Confidence95.52%DateTue Jul 30 13:01:13 BST 2013
Rank50Aligned Residues161
% Identity19%Templatec2adcA_
PDB info PDB header:rna binding protein/rnaChain: A: PDB Molecule:polypyrimidine tract-binding protein 1; PDBTitle: solution structure of polypyrimidine tract binding protein2 rbd34 complexed with cucucu rna
ResolutionUNK
Model Dimensions (Å)X:44.203 Y:50.087 Z:35.268

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   47..50.........60.........70.........80.........90 .........100.....
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Query Sequence  NWEVLDQLKSLICPDQFTTVRLSKSTKDFIRFEGEAETRSLVQI. LKAKLHGKIIKLNGL
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Template Sequence  TPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS
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T


TTS

S
TT
B
SSSB


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   350.........360.........370.........380.........390.........400.........
 
   106...110......... 120.........130 .........140.........150.........160
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Query Sequence  KTDLKVVATDAQGE. . . . WEHFPKEKEAS. VIEGAEEQDHDKGPDSIYFEGLPCKWFAPK
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Template Sequence  KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIP. . . . . . .
Template Known Secondary structure  S







SSSSTTTT
TT
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STTSGGGTT


S
S


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   410.........420.........430.........440.........450.........460..
 
   161........170.........180.........190.........200.........210.........220
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Query Sequence  GSSGEKPCEEILRVVFESFGKIKNVDIPMLDPYREVMTGGSFGGLNFGLQTFEAFIQYQE
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Template Sequence  . . . . PSVSEEDLKVLFSSNGGVVKGFKF. . . . . . . . . . . . . . . . . . FQKDRKMALIQMGS
Template Known Secondary structure  ....TT

TTS

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SSSTT
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   463......470.........480...... ...490.........500
 
   221........230......
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Query Sequence  STDFIKAMESLRGMKL
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Template Sequence  VEEAVQALIDLHNHDL
Template Known Secondary structure  TT
BS
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   501........510......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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