Return to main results Retrieve Phyre Job Id

Job DescriptionA2A3V1
Confidence96.28%DateTue Jul 30 13:01:13 BST 2013
Rank11Aligned Residues78
% Identity26%Templatec2kn4A_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:immunoglobulin g-binding protein g, splicing factor; PDBTitle: the structure of the rrm domain of sc35
ResolutionUNK
Model Dimensions (Å)X:51.093 Y:32.871 Z:28.500

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   137..140.........150.........160.........170.........180.........190......
Predicted Secondary structure 
































Query SS confidence 



























































Query Sequence  EQDHDKGPDSIYFEGLPCKWFAPKGSSGEKPCEEILRVVFESFGKIKNVDIPMLDPYREV
Query Conservation                                                              
Alig confidence 



















...........




























Template Conservation            


 


   ...........

  
   
   
 
    
         
Template Sequence  HHMDVEGMTSLKVDNLTYRT. . . . . . . . . . . SPDTLRRVFEKYGRVGDVYIPRDRYTKES
Template Known Secondary structure 





B

S

TT
...........
S




SS
TTS
Template Predicted Secondary structure 












...........



















Template SS confidence 



























































   63......70.........80.. .......90.........100.........110.
 
   197..200.........210.........220.........230.........
Predicted Secondary structure 
















Query SS confidence 










































Query Sequence  MTGGSFGGLNFGLQTFEAFIQYQESTDFIKAMESLRGMKLMLK
Query Conservation                                             
Alig confidence 
..............



























Template Conservation 
..............
 


 
     
  

  
 
  
 

Template Sequence  R. . . . . . . . . . . . . . GFAFVRFHDKRDAEDAMDAMDGAVLDGR
Template Known Secondary structure 
..............
SBSTTSSSS
Template Predicted Secondary structure 
..............





Template SS confidence 










































   112 .......120.........130.........140
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D