Return to main results Retrieve Phyre Job Id

Job DescriptionA2A3V1
Confidence93.66%DateTue Jul 30 13:01:13 BST 2013
Rank132Aligned Residues87
% Identity21%Templatec2dnmA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:srp46 splicing factor; PDBTitle: solution structure of rna binding domain in srp46 splicing2 factor
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   139140.........150.........160.........170.........180.........190........
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Query Sequence  DHDKGPDSIYFEGLPCKWFAPKGSSGEKPCEEILRVVFESFGKIKNVDIPMLDPYREVMT
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Template Sequence  PDVDGMITLKVDNLT. . . . . . . . YR. . . TSPDSLRRVFEKYGRVGDVYIPREPHTKAPR.
Template Known Secondary structure  S

S


S

........TT...

TTTS


B
SSS
SB
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   8.10.........20.. .. .....30.........40.........50.....
 
   199200.........210.........220.........230.........240.........250........
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Query Sequence  GGSFGGLNFGLQTFEAFIQYQESTDFIKAMESLRGMKLMLKGDDGKALACNIKVMFDTTK
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Template Sequence  . . . . . . . . . . . . . GFAFVRFHDRRDAQDAEAAMDGAELDGR. . . . . . . . . ELRVQVARYG
Template Known Secondary structure  .............S
SSSSSS

BTTB.........


SS
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   56...60.........70.........80... ......90...
 
   259
Predicted Secondary structure 
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Query Sequence  H
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Template Sequence  R
Template Known Secondary structure 
Template Predicted Secondary structure 
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   94
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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