Return to main results Retrieve Phyre Job Id

Job DescriptionP02340
Confidence100.00%DateTue Jul 30 12:57:01 BST 2013
Rank1Aligned Residues231
% Identity86%Templatec3q06B_
PDB info PDB header:cell cycle/dnaChain: B: PDB Molecule:cellular tumor antigen p53; PDBTitle: an induced fit mechanism regulates p53 dna binding kinetics to confer2 sequence specificity
Resolution3.20 Å
Model Dimensions (Å)X:50.748 Y:63.048 Z:37.064

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   90.........100.........110.........120.........130.........140.........
Predicted Secondary structure 


































Query SS confidence 



























































Query Sequence  FVPSQKTYQGNYGFHLGFLQSGTAKSVMCTYSPPLNKLFCQLAKTCPVQLWVSATPPAGS
Query Conservation   

    


 
 
 
 
      

  



  





 
   


 
     

 
 
Alig confidence 



























































Template Conservation    

   


 
 
 
        

  



  
 



 
   


 
     

 
 
Template Sequence  SVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFVQLAKTVPVQLYVDSTPPPGT
Template Known Secondary structure 








TTTT


B






TT
S

B
TTT



TT



SS


TT
Template Predicted Secondary structure 



































Template SS confidence 



























































   96...100.........110.........120.........130.........140.........150.....
 
   150.........160.........170.........180.........190.........200.........
Predicted Secondary structure 

































Query SS confidence 



























































Query Sequence  RVRAMAIYKKSQHMTEVVRRCPHHERCSDGDGLAPPQHLIRVEGNLYPEYLEDRQTFRHS
Query Conservation   



 

   
   
 
 

  
    
        



 


  
 
  
  
 
 
Alig confidence 



























































Template Conservation   


  

   
     
 

  
             



 
 
  
 
  
  


 
Template Sequence  RVRAMAIYKQSQHMTEVVRRCPHHERSSDSDGLAPPQHLIRVEGNLRAEYLDDPNTFRHS
Template Known Secondary structure 
STTTTTS




T


S
SSS
SS
SSS
TT


TTT

Template Predicted Secondary structure 






























Template SS confidence 



























































   156...160.........170.........180.........190.........200.........210.....
 
   210.........220.........230.........240.........250.........260.........
Predicted Secondary structure 


























Query SS confidence 



























































Query Sequence  VVVPYEPPEAGSEYTTIHYKYMCNSSCMGGMNRRPILTIITLEDSSGNLLGRDSFEVRVC
Query Conservation 
 

 
 
  
    

   


 


 







 





   
 



  
 



Alig confidence 



























































Template Conservation 
 

 
 

 
     
   


 


 

 




 





   
 



  
 



Template Sequence  VVVPYEPPEVGSDYTTIYFKFMCNSSCMGGMNRRPILVIITLEDSSGNLLGRDSFEVRVC
Template Known Secondary structure 




SS




S
TT
TTTTTT




TTS

S



Template Predicted Secondary structure 























Template SS confidence 



























































   216...220.........230.........240.........250.........260.........270.....
 
   270.........280.........290.........300.........310.........320.........
Predicted Secondary structure 








































Query SS confidence 



























































Query Sequence  ACPGRDRRTEEENFRKKEVLCPELPPGSAKRALPTCTSASPPQKKKPLDGEYFTLKIRGR
Query Conservation 






  

    

           
               
   
 


 
 



Alig confidence 















............................















Template Conservation 


 


  


   
............................
       
 
 
 

Template Sequence  ACPGRDRRTEEENLRK. . . . . . . . . . . . . . . . . . . . . . . . . . . . KKTMDGEYFTLQIRGR
Template Known Secondary structure  S
TTTTSS............................S













S
Template Predicted Secondary structure 





............................






Template SS confidence 



























































   276...280.........290. ........300.......
 
   330.........340........
Predicted Secondary structure 



Query SS confidence 


















Query Sequence  KRFEMFRELNEALELKDAH
Query Conservation    

 
 

 




 
  
Alig confidence 


















Template Conservation    

 
 
    


    
Template Sequence  ERFEQFRERNEALELKDAQ
Template Known Secondary structure  TTTTTTSSSTTSS

Template Predicted Secondary structure 


Template SS confidence 


















   336...340.........350....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D