Return to main results Retrieve Phyre Job Id

Job DescriptionP02340
Confidence6.38%DateTue Jul 30 12:57:01 BST 2013
Rank68Aligned Residues46
% Identity15%Templatec1svcP_
PDB info PDB header:transcription/dnaChain: P: PDB Molecule:protein (nuclear factor kappa-b (nf-kb)); PDBTitle: nfkb p50 homodimer bound to dna
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   214.....220.........230.........240. ........250.........
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Query Sequence  YEPPEAGSEYTTIHYKYMCNSSCMGGMN. . . . . . . . . RRPILTIITLEDSSGNLL
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Template Sequence  YDSKAPNASNLKIVRMDRTAGCVTGGEEIYLLCDKVQKDDIQIRFYEEEENGGVW
Template Known Secondary structure 
TTSGGG



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STT


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GGG
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   241........250.........260.........270.........280.........290.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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