Job Description P32020 Confidence 99.69% Date Tue Jul 30 13:21:56 BST 2013 Rank 92 Aligned Residues 257 % Identity 16% Template c3v7iA_ PDB info PDB header:transferase, lyase Chain: A: PDB Molecule:putative polyketide synthase; PDBTitle: germicidin synthase (gcs) from streptomyces coelicolor, a type iii2 polyketide synthase Resolution 2.90 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.
Predicted Secondary structure																																								.													.
Query SS confidence																																								.													.
Query Sequence		Y	P	D	M	A	K	E	A	G	Q	K	A	L	E	D	A	Q	I	P	Y	S	A	V	E	Q	A	C	V	G	Y	V	Y	G	D	S	T	S	G	.	Q	R	A	I	Y	H	S	L	G	L	T	G	.	I	P	I	I	N	V	N	N
Query Conservation																																								.													.
Alig confidence																																								.													.
Template Conservation
Template Sequence		V	Q	A	Y	G	E	R	A	A	R	G	A	L	Q	I	A	G	L	D	V	A	D	V	D	C	L	I	T	S	N	S	T	T	P	A	L	P	G	L	D	V	A	L	A	N	R	L	P	L	R	G	D	T	M	L	L	P	A	T	Q
Template Known Secondary structure																		T			G	G	G										S	S			S	S										T	T			T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
			93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	N	C	S	T	G	S	T	A	L	F	M	A	H	Q	L	I	Q	G	G	L	A	N	C	V	L	A	L	G	F	E	K	M	E	R	G	S	I	G	T	K	F	S	D	R	T	T	P	T	D	K	H	I	E	V	L	I	D	K	Y
Query Conservation		.
Alig confidence		.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	A	C	V	A	G	T	R	S	L	A	L	A	A	D	L	V	A	A	D	P	D	R	V	V	L	V	V	I	S	E	A	L	S	T	T	Y	Q	P	A	D	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			G	G	G																	T	T											G	G	G	G			S	S			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	S	A	H	P	I	T	P	Q	M	F	G	Y	A	G	K	E	H	M	E	K	Y	G	T	K	V	E	H	F	A	K	I	G	W	K	N	H	K	H	S	V	N	N	T	Y	S	Q	F	Q	D	E	Y	S	L	E	E	V	M	K
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	K	P	V	F	D	F	L	T	I	L	Q	C	C	P	T	S	D	G	A	A	A	A	I	L	S	S	E	E	F	V	Q	Q	Y	G	L	Q	S	K	A	V	E	I	V	A	Q	E	M	M	T	D	L	P	S	T	F	E	E	K	S
Query Conservation
Alig confidence		.	.	.	.	.	.																								.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.																								.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	L	E	S	L	I	V	R	L	L	F	A	D	T	A	V	A	A	V	V	T	G	R	P	.	.	.	.	.	.	R	P	E	S	V	L	R	L	D	A	A	W	H	H	T	L	P	G	T	R	D	L	H	R	L
Template Known Secondary structure		.	.	.	.	.	.	T	T								B											S	S		.	.	.	.	.	.		T	T														T	T		T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.																								.	.	.	.	.	.
Template SS confidence
								216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.							.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		272	.	.	.	.	.	.														.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.			.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Query Sequence		I	I	K	V	V	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	D	M	S	K	E	A	A	R	R	C	Y	E	K	S	G	L	.	.	T	P	N	D	V	D	V	I	E	L	H	D	C	F	S	V	N	E	L	I	T	Y
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation
Template Sequence		E	T	R	A	D	G	T	H	F	V	M	D	R	R	G	P	R	A	V	Q	E	T	V	T	A	M	W	E	W	L	R	V	R	Y	E	D	D	P	S	S	W	H	P	D	V	L	L	A	H	P	G	G	T	R	V	L	E	Y	M	E
Template Known Secondary structure					T	T								T	T																				T	S	S	S		T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	L	G	L	C	P	E	G	Q	G	G	T	L	V	D	R	G	D	N	T	Y	G	G	K	W	V	I	N	P	S	G	G	L	I	S	K	G	H	P	L	G	A	T	G	L	A	Q	C	A	E	L	C	W	Q	L	R	G	E	A
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Sequence		Q	T	M	P	D	E	W	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	L	L	S	Y	S	R	D	S	Y	T	S	G	N	R	G	G	A	A	V	F	D	I	L	R	R	A	H	D	A	G	Q	.	K	T
Template Known Secondary structure				S		S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		S	T								T	T		B		G	G	G															.		T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template SS confidence
		324	.	.	.	.	.	330	.																	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	R	Q	V	P	G	A	K	V	A	L	Q	H	N	L	G	L	G	G	A	V	V	V	T	L	Y	R
Query Conservation
Alig confidence			.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.
Template Sequence		G	.	.	.	.	.	.	.	S	R	A	V	L	Y	A	A	A	P	G	L	T	A	T	A	L	E	G	E
Template Known Secondary structure		T	.	.	.	.	.	.	.										T	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.
Template SS confidence
		367								.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D