Job Description P32020 Confidence 100.00% Date Tue Jul 30 13:21:56 BST 2013 Rank 12 Aligned Residues 344 % Identity 24% Template c2iikA_ PDB info PDB header:transferase Chain: A: PDB Molecule:3-ketoacyl-coa thiolase, peroxisomal; PDBTitle: crystal structure of human peroxisomal acetyl-coa acyl transferase 12 (acaa1) Resolution 2.55 Å Model Dimensions (Å) X:61.278 Y:55.265 Z:50.548

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		R	R	V	F	V	V	G	V	G	M	T	K	F	M	K	.	.	P	G	G	E	N	S	R	D	Y	P	D	M	A	K	E	A	G	Q	K	A	L	E	D	A	Q	I	P	Y	S	A	V	E	Q	A	C	V	G	Y	V	Y	G	D	S
Query Conservation																	.	.
Alig confidence																	.	.
Template Conservation
Template Sequence		A	D	V	V	V	V	H	G	R	R	T	A	I	C	R	A	G	R	G	G	F	K	D	T	T	P	D	E	L	L	S	A	V	M	T	A	V	L	K	D	V	N	L	R	P	E	Q	L	G	D	I	C	V	G	N	V	L	Q	P	G
Template Known Secondary structure		T															T	T	T	S	T	T	T	T																			T			G	G	G									S	S	S	G	G
Template Predicted Secondary structure
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		70	.			.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure				.	.														.
Query SS confidence				.	.														.
Query Sequence		T	S	.	.	G	Q	R	A	I	Y	H	S	L	G	L	T	G	.	I	P	I	I	N	V	N	N	N	C	S	T	G	S	T	A	L	F	M	A	H	Q	L	I	Q	G	G	L	A	N	C	V	L	A	L	G	F	E	K	M	E	R
Query Conservation				.	.														.
Alig confidence				.	.														.
Template Conservation
Template Sequence		A	G	A	I	M	A	R	I	A	Q	F	L	S	D	I	P	E	T	V	P	L	S	T	V	N	R	Q	C	S	S	G	L	Q	A	V	A	S	I	A	G	G	I	R	N	G	S	Y	D	I	G	M	A	C	G	V	E	S	M	S	L
Template Known Secondary structure		G	G											T	T			T	T	S								G	G	G															T	T	S		S										T	T	T
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	I	G	T	K	F	S	D	R	T	T	P	T	D	K	H	I	E	V	L	I	D	K	Y	G	L	S	A	H	P	I	T	P	Q	M	F	G	Y	A	G	K	E	H	M	E	K	Y	G	T	K	V	E	H	F	A	K	I	G	W
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	G	N	I	T	S	R	L	M	E	K	E	K	A	R	D	C	L	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	G	I	T	S	E	N	V	A	E	R	F	G	I	S	R	E	K	Q	D	T	F	A	L
Template Known Secondary structure				.				T	T	G	G	G						G	G	G	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.																.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		187	.	.	190	.	.	.																															.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	N	H	K	H	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	N	T	Y	S	Q	F	Q	D	E	Y	S	L	E	E	V	M	K	S	K	P	V	F
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	S	Q	Q	K	A	A	R	A	Q	S	K	G	C	F	Q	A	E	I	V	P	V	T	T	T	V	H	D	D	K	G	T	K	R	S	I	T	V	T	Q	D	E	G	I	R	P	S	T	T	M	E	G	L	A	K	L	K	P	A	F
Template Known Secondary structure														T	T	T	T	T	T	B										T	T	S									S		T	T			T	T												S	S
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
		217	.				.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure				.	.	.
Query SS confidence				.	.	.
Query Sequence		D	F	.	.	.	L	T	I	L	Q	C	C	P	T	S	D	G	A	A	A	A	I	L	S	S	E	E	F	V	Q	Q	Y	G	L	Q	S	K	A	V	E	I	V	A	Q	E	M	M	T	D	L	P	S	T	F	E	E	K	S	I	I
Query Conservation				.	.	.
Alig confidence				.	.	.																																		.																	.	.	.	.	.
Template Conservation																																								.																	.	.	.	.	.
Template Sequence		K	K	D	G	S	T	T	A	G	N	S	S	Q	V	S	D	G	A	A	A	I	L	L	A	R	R	S	K	A	E	E	L	G	L	P	I	L	G	.	V	L	R	S	Y	A	V	V	G	V	P	P	D	I	M	G	.	.	.	.	.
Template Known Secondary structure		S	T	T					S	T	T	B																						T						.												G	G	G	G	G	.	.	.	.	.
Template Predicted Secondary structure																																								.																	.	.	.	.	.
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.		.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	V	G	Y	D	M	S	K	E	A	A	R	R	C	Y	E	K	S	G	L	T	P	N	D	V	D	V	I	E	L	H	D	C	F	S	V	N	E	L	I	T	Y	E	A	L	G	L	C	P	E	G	Q	G	G	T	L	V	D	R
Query Conservation
Alig confidence		.	.	.	.	.																																															.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																															.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	I	G	P	A	Y	A	I	P	V	A	L	Q	K	A	G	L	T	V	S	D	V	D	I	F	E	I	N	E	A	F	A	S	Q	A	A	Y	C	V	E	K	L	R	L	P	P	E	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	G														T			G	G	G									S	B												T			G	G	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.																																															.	.	.	.	.	.	.	.	.
Template SS confidence
							320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	N	T	Y	G	G	K	W	V	I	N	P	S	G	G	L	I	S	K	G	H	P	L	G	A	T	G	L	A	Q	C	A	E	L	C	W	Q	L	R	G	E	A	G	K	R	Q	V	P	G	A	K	V	A	L	Q	H	N	L	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	K	V	N	P	L	G	G	A	V	A	L	G	H	P	L	G	C	T	G	A	R	Q	V	I	T	L	L	N	E	L	K	R	R	G	K	R	A	.	.	.	.	.	.	Y	G	V	V	S	M	C	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	G	B		T	T																													T	S			.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.
Template SS confidence
											366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.							.	.	.	.	.	.	.	410
		394	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	G	A	V	V	V	T	L	Y	R	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	T	G	M	G	A	A	A	V	F	E	Y
Template Known Secondary structure		T	T	T
Template Predicted Secondary structure
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.