Job Description P32020 Confidence 99.55% Date Tue Jul 30 13:21:56 BST 2013 Rank 96 Aligned Residues 263 % Identity 19% Template c2f9aA_ PDB info PDB header:transferase Chain: A: PDB Molecule:3-hydroxy-3-methylglutaryl coenzyme a synthase 1; PDBTitle: hmg-coa synthase from brassica juncea in complex with f-244 Resolution 2.51 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.	.	80	.	.				.	.	.
Predicted Secondary structure																																															.	.								.	.	.
Query SS confidence																																															.	.								.	.	.
Query Sequence		N	S	R	D	Y	P	D	M	A	K	E	A	G	Q	K	A	L	E	D	A	Q	I	P	Y	S	A	V	E	Q	A	C	V	G	Y	V	Y	G	D	S	T	S	G	Q	R	A	.	.	I	Y	H	S	L	G	L	.	.	.	T	G	I
Query Conservation																																															.	.								.	.	.
Alig confidence																																															.	.								.	.	.
Template Conservation
Template Sequence		E	L	E	D	V	I	S	M	S	F	N	A	V	T	S	L	L	E	K	Y	K	I	D	P	K	Q	I	G	R	L	E	V	G	S	E	T	V	I	D	K	S	K	S	I	K	T	F	L	M	Q	L	F	E	K	C	G	N	T	D	V
Template Known Secondary structure		T	T																		T	T			G	G	G												S		S	S	S							T					T	T	T
Template Predicted Secondary structure
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		P	I	I	N	V	N	N	N	C	S	T	G	S	T	A	L	F	M	A	H	Q	L	I	Q	G	G	L	.	.	A	N	C	V	L	A	L	G	F	E	K	M	E	R	G	S	I	G	T	K	F	S	D	R	T	T	P	T	D	K	H
Query Conservation																													.	.
Alig confidence																													.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	G	V	D	S	T	N	A	C	Y	G	G	T	A	A	L	L	N	C	V	N	W	V	E	S	N	S	W	D	G	R	Y	G	L	V	I	C	T	D	S	A	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		B						S	G	G	G														T	S	T	T			S													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	V	L	I	D	K	Y	G	L	S	A	H	P	I	T	P	Q	M	F	G	Y	A	G	K	E	H	M	E	K	Y	G	T	K	V	E	H	F	A	K	I	G	W	K	N	H	K	H	S	V	N	N	T	Y	S	Q	F	Q	D	E
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	L	E	E	V	M	K	S	K	P	V	F	D	F	L	T	I	L	Q	C	C	P	T	S	D	G	A	A	A	A	I	L	S	S	E	E	F	V	Q	Q	Y	G	L	Q	S	K	A	V	E	I	V	A	Q	E	M	M	T	D	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	A	E	G	P	A	R	P	T	G	G	A	A	A	I	A	M	L	I	G	P	.	.	.	.	.	.	.	.	D	A	P	I	V	F	E	S	K	L	R	G	S	H	M	A	H
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S	T	T	G	G	G												S	.	.	.	.	.	.	.	.	S		S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.
Template SS confidence
																151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.									.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.								.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.											.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Query Sequence		P	S	T	F	E	E	K	S	I	I	K	V	.	.	.	.	.	.	.	V	G	Y	D	M	S	K	E	A	A	R	R	C	Y	E	K	S	.	.	.	.	.	.	.	.	.	.	G	L	T	P	N	D	V	D	V	I	E	L	H	D
Query Conservation														.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Y	D	F	Y	K	P	N	L	A	S	E	Y	P	V	V	D	G	K	L	S	Q	T	C	Y	L	M	A	L	D	S	C	Y	K	H	L	C	N	K	F	E	K	L	E	G	K	E	F	S	I	N	D	A	D	Y	F	V	F	H	S
Template Known Secondary structure				S						T	T																																			S	S				G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		C	F	S	V	N	E	L	I	T	Y	E	A	L	G	L	C	P	E	G	Q	G	G	T	L	V	D	R	G	D	N	T	Y	G	G	K	W	V	I	N	P	S	G	G	L	I	S	K	.	G	H	P	L	G	A	T	G	L	A	Q	C
Query Conservation																																																	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	Y	N	K	L	V	Q	K	S	F	A	R	L	L	Y	Y	D	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Q	P	T	T	L	V	P	K	Q	V	G	N	M	Y	T	A	S	L	Y	A	A	F
Template Known Secondary structure		S	S																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	G	G											G	G	G
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.																			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	L	C	W	Q	L	R	G	E	A	G	K	R	Q	V	P	G	A	K	V	A	L	Q	H	N	L	G	L	G	G	A	V	V	V	T	L	Y	R	M	G	F	P	E	A	A	S	S	F	R	T	H	Q	V
Query Conservation
Alig confidence									.	.	.	.	.													.	.	.
Template Conservation									.	.	.	.	.													.	.	.
Template Sequence		A	S	L	V	H	N	K	.	.	.	.	.	H	S	D	L	A	G	K	R	V	V	M	F	.	.	.	S	Y	G	S	G	S	T	A	T	M	F	S	L	R	L	C	E	N	Q	S	P	F	S	L	S	N	I
Template Known Secondary structure									.	.	.	.	.	T	T	T		T	T							.	.	.				T	T	T														T	T	S	S
Template Predicted Secondary structure									.	.	.	.	.													.	.	.
Template SS confidence
		337	.	.	340	.	.	.						.	.	.	.	.	.	350	.	.	.	.	.				.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D