Job Description P32020 Confidence 100.00% Date Tue Jul 30 13:21:56 BST 2013 Rank 2 Aligned Residues 352 % Identity 22% Template c2d3tC_ PDB info PDB header:lyase, oxidoreductase/transferase Chain: C: PDB Molecule:3-ketoacyl-coa thiolase; PDBTitle: fatty acid beta-oxidation multienzyme complex from2 pseudomonas fragi, form v Resolution 3.40 Å Model Dimensions (Å) X:57.807 Y:59.888 Z:46.006

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
Predicted Secondary structure																						.	.																						.
Query SS confidence																						.	.																						.
Query Sequence		S	P	R	L	R	R	V	F	V	V	G	V	G	M	T	K	F	M	K	P	.	.	G	G	E	N	S	R	D	Y	P	D	M	A	K	E	A	G	Q	K	A	L	E	.	D	A	Q	I	P	Y	S	A	V	E	Q	A	C	V	G	Y
Query Conservation																						.	.																						.
Alig confidence																						.	.																						.
Template Conservation
Template Sequence		S	L	N	P	R	D	V	V	I	V	D	F	G	R	T	P	M	G	R	S	K	G	G	M	H	R	N	T	R	A	E	D	M	S	A	H	L	I	S	K	V	L	E	R	N	S	K	V	D	P	G	E	V	E	D	V	I	W	G	C
Template Known Secondary structure					T	T	S														S	S	S		T	T	T	T																	T	T	T	T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
		65	.	.	.	.				70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure							.	.	.															.
Query SS confidence							.	.	.															.
Query Sequence		V	Y	G	D	S	.	.	.	T	S	G	Q	R	A	I	Y	H	S	L	G	L	T	.	G	I	P	I	I	N	V	N	N	N	C	S	T	G	S	T	A	L	F	M	A	H	Q	L	I	Q	G	G	L	A	N	C	V	L	A	L	G
Query Conservation							.	.	.															.
Alig confidence							.	.	.															.
Template Conservation
Template Sequence		V	N	Q	T	L	E	Q	G	W	N	I	A	R	M	A	S	L	M	T	Q	I	P	H	T	S	A	A	Q	T	V	S	R	L	C	G	S	S	M	S	A	L	H	T	A	A	Q	A	I	M	T	G	N	G	D	V	F	V	V	G	G
Template Known Secondary structure		S	S		S	G	G	G	T	T	T							T	T	S	S	S		T	T	S								G	G	G															T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	K	M	E	R	G	S	I	G	T	K	F	S	D	R	T	T	P	T	D	K	H	I	E	V	L	I	D	K	Y	G	L	S	A	H	P	I	T	P	Q	M	F	G	Y	A	G	K	E	H	M	E	K	Y	G	T	K	V	E	H
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	E	H	M	G	H	V	S	M	M	H	G	V	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	H	M	S	L	Y	A	A	K	A	S	G	M	M	G	L	T	A	E	M	L	G	K	M	H	G	I	S	R	E	Q
Template Known Secondary structure					T	T	T	S		T	T	S	S				.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	G	G	T	S		G	G	G	G	S												T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.														.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.																											.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	A	K	I	G	W	K	N	H	K	H	S	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	T	Y	S	Q	F	Q	D	E	Y	S	L	E	E	V	M	K	S	K	P
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	D	A	F	A	V	R	S	H	Q	L	A	H	K	A	T	V	E	G	K	F	K	D	E	I	I	P	M	Q	G	Y	D	E	N	G	F	L	K	I	F	D	Y	D	E	T	I	R	P	D	T	T	L	E	S	L	A	A	L	K	P
Template Known Secondary structure																			T	T	S	S	T	T	T	B								T	T								S		T	T			T	T								T	S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		215	.	.	.					.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure						.	.	.	.
Query SS confidence						.	.	.	.
Query Sequence		V	F	D	F	.	.	.	.	L	T	I	L	Q	C	C	P	T	S	D	G	A	A	A	A	I	L	S	S	E	E	F	V	Q	Q	Y	G	L	Q	S	K	A	V	E	I	V	A	Q	E	M	M	T	D	L	P	S	T	F	E	E	K
Query Conservation						.	.	.	.
Alig confidence						.	.	.	.																																		.
Template Conservation																																											.
Template Sequence		A	F	N	P	K	G	G	T	V	T	A	G	T	S	S	Q	I	T	D	G	A	S	C	M	I	V	M	S	A	Q	R	A	K	D	L	G	L	E	P	L	A	.	V	I	R	S	M	A	V	A	G	V	D	P	A	I	M	G	Y	G
Template Known Secondary structure		S	S		T	T	T					T	T	T	B																						T				S		.												G	G	G	G	G	G
Template Predicted Secondary structure																																											.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	I	K	V	V	G	Y	D	M	S	K	E	A	A	R	R	C	Y	E	K	S	G	L	T	P	N	D	V	D	V	I	E	L	H	D	C	F	S	V	N	E	L	I	T	Y	E	A	L	G	L	C	P	E	G	Q	G	G	T	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																																.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	P	V	P	A	T	Q	K	A	L	K	R	A	G	L	N	M	A	D	I	D	F	I	E	L	N	E	A	F	A	A	Q	A	L	P	V	L	K	D	L	K	V	L	D	K	M	N	E	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.											T	T	T			T	T	T		S							S	B											T	T		G	G	G				.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																.	.	.
Template SS confidence
												288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	R	G	D	N	T	Y	G	G	K	W	V	I	N	P	S	G	G	L	I	S	K	G	H	P	L	G	A	T	G	L	A	Q	C	A	E	L	C	W	Q	L	R	G	E	A	G	K	R	Q	V	P	G	A	K	V	A	L	Q	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	K	V	N	L	H	G	G	A	I	A	L	G	H	P	F	G	C	S	G	A	R	I	S	G	T	L	L	N	V	M	K	Q	N	G	G	T	F	G	L	.	.	.	.	.	.	.	S	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.		B	S	S	S										T	T	T																T	T						.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.
Template SS confidence
														335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.								.	.
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	G	L	G	G	A	V	V	V	T	L	Y	R	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	C	I	G	L	G	Q	G	I	A	T	V	F	E	R
Template Known Secondary structure					T	T	T
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390