Job Description P32020 Confidence 99.96% Date Tue Jul 30 13:21:56 BST 2013 Rank 24 Aligned Residues 306 % Identity 26% Template c1j3nB_ PDB info PDB header:transferase Chain: B: PDB Molecule:3-oxoacyl-(acyl-carrier protein) synthase ii; PDBTitle: crystal structure of 3-oxoacyl-(acyl-carrier protein)2 synthase ii from thermus thermophilus hb8 Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		11	.	.	.	.	.	.	.	.	20	.	.																															.	.		.	.	.	.	.	30	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.														.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.														.	.
Query Sequence		L	R	R	V	F	V	V	G	V	G	M	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	F	.	M	K	P	G	G	E	N	S	R	D	Y	P	D	.	.
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.														.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			.														.	.
Template Conservation
Template Sequence		M	R	R	V	V	V	T	G	L	G	A	L	T	P	I	G	V	G	Q	E	A	F	H	K	A	Q	L	A	G	K	S	G	V	R	P	I	T	R	F	D	A	S	A	L	P	V	R	I	A	A	E	V	D	V	D	P	G	A	Y	L
Template Known Secondary structure															T	T			S										T	T									S	S			T	T	S	S											G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
															38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.					.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	M	A	K	E	A	G	Q	K	A	L	E	D	A	Q	I	P	Y	S	A	V	E	.	.	.	.	Q	A	C	V	G	Y	V	Y	G	D	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	R	K	E	L	R	R	L	D	R	F	V	Q	Y	A	L	I	A	A	Q	L	A	L	E	D	A	G	L	K	P	E	D	L	D	P	E	R	V	G	T	L	V	G	T	G	I	G	G	M	E	T	W	E	A	Q	S	R	V	F	L
Template Known Secondary structure			T	T	T	G	G	G	S																		T	T			G	G	G	S		G	G	G								S	S
Template Predicted Secondary structure
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
																		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	S	G	Q	R	A	I	Y	H	S	L	G	L	T	G	I	P	I	I	N	V	N	N	N	C	S	T	G	S	T	A	L	F	M	A	H	Q	L	I	Q	G	G	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																																		.
Template Sequence		E	R	G	P	N	R	I	S	P	F	F	I	P	M	M	I	A	N	M	A	S	A	H	I	A	M	R	Y	G	F	T	G	.	P	S	S	T	V	V	T	A	C	A	T	G	A	D	A	L	G	S	A	L	R	M	I	Q	L	G	E
Template Known Secondary structure					T	T	S	S		T	T						S	T	T											T			S	.								G	G	G															T	T	S
Template Predicted Secondary structure																																		.
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	N	C	V	L	A	L	G	F	E	K	M	E	R	G	S	I	G	T	K	F	S	D	R	T	T	P	T	D	K	H	I	E	V	L	I	D	K	Y	G	L	S	A	H	P	I	T	P	Q	M	F	G	Y	A	G	K	E	H	M	E
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	D	L	V	L	A	G	G	T	E	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	G	T	K	V	E	H	F	A	K	I	G	W	K	N	H	K	H	S	V	N	N	T	Y	S	Q	F	Q	D	E	Y	S	L	E	E	V	M	K	S	K	P	V	F	D	F	L	T	I	L	Q	C	C	P	T	S	D	G	A	A
Query Conservation
Alig confidence		.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	I	T	P	M	A	I	G	A	F	A	V	M	R	A	L	S	T	R	N	E	E	P	E	K	A	S	R	P	F	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	R	D	G	F	V	M	G	E	G	A	G
Template Known Secondary structure		.	.	.		S										T	T		B				T	T	S	G	G	G	S			T	T	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T				B		B	B
Template Predicted Secondary structure		.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.															.	.	.	.	.	.	.	.	230	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	I	L	S	S	E	E	F	V	Q	Q	Y	G	L	Q	S	K	A	V	E	I	V	A	Q	E	M	M	T	D	L	P	S	T	F	E	E	K	S	I	I	K	V	V	G	Y	D	M	S	K	E	A	A	R	R	C	Y	E	K	S
Query Conservation
Alig confidence																					.											.	.	.	.	.
Template Conservation																					.											.	.	.	.	.
Template Sequence		V	L	V	L	E	A	Y	E	H	A	K	K	R	G	A	R	I	Y	A	.	E	L	V	G	F	G	R	S	A	D	.	.	.	.	.	A	H	H	I	T	E	P	H	P	E	G	K	G	A	A	L	A	M	A	R	A	L	K	D	A
Template Known Secondary structure															T						.											.	.	.	.	.		S		S	S				T	T
Template Predicted Secondary structure																					.											.	.	.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.						.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310					.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.
Query SS confidence																				.	.	.	.
Query Sequence		G	L	T	P	N	D	V	D	V	I	E	L	H	D	C	F	S	V	.	.	.	.	N	E	L	I	T	Y	E	A	L	G	L	C	P	E	G	Q	G	G	T	L	V	D	R	G	D	N	T	Y	G	G	K	W	V	I	N	P	S	G
Query Conservation																				.	.	.	.
Alig confidence																				.	.	.	.										.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	A	P	E	Q	V	G	Y	I	N	A	H	G	T	S	T	P	V	G	D	R	A	E	V	L	A	I	K	R	V	.	F	G	D	H	A	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	L	M	V	S	S	T	K
Template Known Secondary structure		T			G	G	G																										.		G	G	G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T						T
Template Predicted Secondary structure																																	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.															.	.	.	.	330	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.																				.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	L	I	S	K	G	H	P	L	G	A	T	G	L	A	Q	C	A	E	L	C	W	Q	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	E	A	G	K	R	Q	V	P	G	A	K	V	A	L	Q
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.
Template Sequence		S	M	I	.	.	G	H	L	L	G	A	A	G	A	V	E	A	I	A	T	V	Q	A	L	Y	H	G	V	I	P	P	T	I	N	L	E	D	P	D	P	E	L	D	L	D	F	V	P	E	P	R	E	A	K	V	D	Y	A	L	S
Template Known Secondary structure					.	.		B		G	G	G																T						T	T	T	T	S	B		T	T			S	B			S	S							S
Template Predicted Secondary structure					.	.
Template SS confidence
		334	.	.			.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	N	L	G	L	G	G	A	V	V	V	T	L	Y	R	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	S	F	A	F	G	G	H	N	A	V	L	A	F	K	R
Template Known Secondary structure						T	T	S
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.