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Job DescriptionP39688
Confidence100.00%DateWed Jul 10 14:11:43 BST 2013
Rank166Aligned Residues249
% Identity23%Templatec4dc2A_
PDB info PDB header:transferase/transferase substrateChain: A: PDB Molecule:protein kinase c iota type; PDBTitle: structure of pkc in complex with a substrate peptide from par-3
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   266...270.........280.........290... ......300.........310.........320. ..
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Query Sequence  IPRESLQLIKRLGNGQFGEVWLGTWNGN. TKVAIKTLKPGTMSPESFLEEAQIMKKL. KH
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Template Sequence  LGLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNIDWVQTEKHVFEQASNH
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GGG
SSTTTTGGGT


TT
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   239240.........250.........260.........270.........280.........290........
 
   324.....330..... ....340.........350.........360.........370.........380..
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Query Sequence  DKLVQLYAVVSE. EPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIE
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Template Sequence  PFLVGLHSCFQTESRLFFVIEYVNGGDLMFHM. . QRQRKLPEEHARFYSAEISLALNYLH
Template Known Secondary structure  TTB


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TT
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   303......310.........320.........330.... .....340.........350.........360
 
   383......390.........400.........410.........420.........430.........440..
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Query Sequence  RMNYIHRDLRSANILVGNGLICKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGR
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Template Sequence  ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPN. YIAPEILRGED
Template Known Secondary structure  TT
B




GGG
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GG.G

TT

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   361........370.........380.........390.........400........ .410.........
 
   443......450.........460.........470. ........480.........490.........500
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Query Sequence  FTIKSDVWSFGILLTELVTKGRVPYPGMN. . NREVLEQVERGYRMPCPQDCPISLHELMI
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Template Sequence  YGFSVDWWALGVLMFEMMA. GRSPFDIVGSNTEDYLFQVILEKQIRIPRSLSVKAASVLK
Template Known Secondary structure  B
T.SS
SSTTTT








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   420.........430........ .440.........450.........460.........470........
 
   501........510. .......
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Query Sequence  HCWKKDPEERP. . . . . . TFEYLQG
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Template Sequence  SFLNKDPKERLGCHPQTGFADIQG
Template Known Secondary structure  T
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TTTSTT
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   485....490.........500........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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