Job Description P39688 Confidence 100.00% Date Wed Jul 10 14:11:43 BST 2013 Rank 290 Aligned Residues 240 % Identity 25% Template c4bgqA_ PDB info PDB header:transferase Chain: A: PDB Molecule:cyclin-dependent kinase-like 5; PDBTitle: crystal structure of the human cdkl5 kinase domain Resolution 2.00 Å

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		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																										.
Query SS confidence																										.
Query Sequence		E	S	L	Q	L	I	K	R	L	G	N	G	Q	F	G	E	V	W	L	G	T	W	N	G	.	N	T	K	V	A	I	K	T	L	K	P	G	T	M	S	P	E	S	F	L	E	E	A	Q	I	M	K	K	L	K	H	D	K	L	V
Query Conservation																										.
Alig confidence																										.													.	.	.	.
Template Conservation																																							.	.	.	.
Template Sequence		N	K	F	E	I	L	G	V	V	G	E	G	A	Y	G	V	V	L	K	C	R	H	K	E	T	H	E	I	V	A	I	K	K	F	K	V	K	.	.	.	.	E	T	T	L	R	E	L	K	M	L	R	T	L	K	Q	E	N	I	V
Template Known Secondary structure		T	T										S	S	S									T	T	T													.	.	.	.													T		S	T	T	B
Template Predicted Secondary structure																																							.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.					.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		328	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
Predicted Secondary structure										.
Query SS confidence										.
Query Sequence		Q	L	Y	A	V	V	S	E	.	E	P	I	Y	I	V	T	E	Y	M	S	K	G	S	L	L	D	F	L	K	D	G	E	G	R	A	L	K	L	P	N	L	V	D	M	A	A	Q	V	A	A	G	M	A	Y	I	E	R	M	N	Y
Query Conservation										.
Alig confidence										.																				.	.
Template Conservation																														.	.
Template Sequence		E	L	K	E	A	F	R	R	R	G	K	L	Y	L	V	F	E	Y	V	E	K	N	M	L	E	L	L	E	.	.	E	M	P	N	G	V	P	P	E	K	V	K	S	Y	I	Y	Q	L	I	K	A	I	H	W	C	H	K	N	D	I
Template Known Secondary structure										T	T										S									.	.		S	T	T																								T	T
Template Predicted Secondary structure																														.	.
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.			.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	R	D	L	R	S	A	N	I	L	V	G	N	G	L	I	C	K	I	A	D	F	G	L	A	R	L	I	E	D	N	E	Y	T	A	R	Q	G	A	K	F	P	I	K	W	T	A	P	E	A	A	L	Y	G	R	F	T	I	K
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	H	R	D	I	K	P	E	N	L	L	I	S	H	N	D	V	L	K	L	C	D	F	G	F	A	R	N	L	S	E	T	R	W	.	.	.	.	.	.	.	.	.	.	.	Y	R	S	P	E	L	L	L	G	A	P	Y	G	K	S
Template Known Secondary structure								G	G	G					T	T									T	T				T	T				T	.	.	.	.	.	.	.	.	.	.	.	T							T	T					T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.												.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	D	V	W	S	F	G	I	L	L	T	E	L	V	T	K	G	R	V	P	Y	P	G	M	N	N	R	E	V	L	E	Q	V	E	R	G	Y	R	M	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.
Template Sequence		V	D	M	W	S	V	G	C	I	L	G	E	L	S	D	.	G	Q	P	L	F	P	G	E	S	E	I	D	Q	L	F	T	I	Q	K	V	L	G	P	L	P	S	E	Q	M	K	L	F	Y	S	N	P	R	F	H	G	L	R	F	P
Template Known Secondary structure																	.	S			S				S	S														S												S	G	G	G	T	T
Template Predicted Secondary structure																	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.		.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
													487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	C	P	Q	D	C	P	I	S	L	H	E	L	M	I	H	C	W	K	K	D	P	E	E	R	P	T	F	E	Y	L	Q	G	F	L	E	D	Y	F	T	A	T	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																	.	.
Template Conservation																																													.	.
Template Sequence		A	V	N	H	P	Q	S	L	E	R	R	Y	L	G	I	L	N	S	V	L	L	D	L	M	K	N	L	L	K	L	D	P	A	D	R	Y	L	T	E	Q	C	L	N	.	.	H	P	T	F	Q	T	Q	R
Template Known Secondary structure				S	S									T	T	T	S												S		S	S	G	G	G	S								T	.	.	S
Template Predicted Secondary structure																																													.	.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D