Job Description P39688 Confidence 100.00% Date Wed Jul 10 14:11:43 BST 2013 Rank 251 Aligned Residues 247 % Identity 24% Template c3mi9A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:cell division protein kinase 9; PDBTitle: crystal structure of hiv-1 tat complexed with human p-tefb Resolution 2.10 Å

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		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.				.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
Predicted Secondary structure																										.											.	.	.
Query SS confidence																										.											.	.	.
Query Sequence		E	S	L	Q	L	I	K	R	L	G	N	G	Q	F	G	E	V	W	L	G	T	W	N	G	.	N	T	K	V	A	I	K	T	L	K	.	.	.	P	G	T	M	S	P	E	S	F	L	E	E	A	Q	I	M	K	K	L	K	H	D
Query Conservation																										.											.	.	.
Alig confidence																										.											.	.	.
Template Conservation
Template Sequence		S	K	Y	E	K	L	A	K	I	G	Q	G	T	F	G	E	V	F	K	A	R	H	R	K	T	G	Q	K	V	A	L	K	K	V	L	M	E	N	E	K	E	G	F	P	I	T	A	L	R	E	I	K	I	L	Q	L	L	K	H	E
Template Known Secondary structure		G	G								S	S		S	T	T	S							T	T	T												S	S		S	S	S	S																	T
Template Predicted Secondary structure
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		325	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		K	L	V	Q	L	Y	A	V	V	S	E	.	E	P	I	Y	I	V	T	E	Y	M	S	K	G	S	L	L	D	F	L	K	D	G	E	G	R	A	L	K	L	P	N	L	V	D	M	A	A	Q	V	A	A	G	M	A	Y	I	E	R
Query Conservation													.
Alig confidence													.																				.	.
Template Conservation																																	.	.
Template Sequence		N	V	V	N	L	I	E	I	C	R	T	K	G	S	I	Y	L	V	F	D	F	C	E	H	D	L	A	G	L	L	S	.	.	N	V	L	V	K	F	T	L	S	E	I	K	R	V	M	Q	M	L	L	N	G	L	Y	Y	I	H	R
Template Known Secondary structure		T	B																					S									.	.		T	T	S
Template Predicted Secondary structure																																	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.			.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.		.	440
Predicted Secondary structure																																		.	.																								.
Query SS confidence																																		.	.																								.
Query Sequence		M	N	Y	I	H	R	D	L	R	S	A	N	I	L	V	G	N	G	L	I	C	K	I	A	D	F	G	L	A	R	L	I	.	.	E	D	N	E	Y	T	A	R	Q	G	A	K	F	P	I	K	W	T	A	P	E	A	A	.	L	Y
Query Conservation																																		.	.																								.
Alig confidence																																		.	.																								.
Template Conservation
Template Sequence		N	K	I	L	H	R	D	M	K	A	A	N	V	L	I	T	R	D	G	V	L	K	L	A	D	F	G	L	A	R	A	F	S	L	A	K	N	S	Q	P	N	R	Y	N	R	V	V	T	L	W	Y	R	P	P	E	L	L	L	G	E
Template Known Secondary structure		T	T							S	G	G	G					T	T	S								T	T								S	S	S	S								S		G	G	G							T	T
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		G	R	F	T	I	K	S	D	V	W	S	F	G	I	L	L	T	E	L	V	T	K	G	R	V	P	Y	P	G	M	N	N	R	E	V	L	E	Q	V	E	R	G	Y	R	M	P	C	P	Q	D	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.
Alig confidence																							.																													.	.	.	.	.	.	.	.	.	.
Template Conservation																							.
Template Sequence		R	D	Y	G	P	P	I	D	L	W	G	A	G	C	I	M	A	E	M	W	T	.	R	S	P	I	M	Q	G	N	T	E	Q	H	Q	L	A	L	I	S	Q	L	C	G	S	I	T	P	E	V	W	P	N	V	D	N	Y	E	L	Y
Template Known Secondary structure			S			T																	.	S	S		S				S	S																	T	T	T	S	T	T	G	G	G		G	G	G
Template Predicted Secondary structure																							.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
																							491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	P	I	S	L	H	E	L	M	I	H	C	W	K	K	D	P	E	E	R	P	T	F	E	Y	L	Q	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	K	L	E	L	V	K	G	Q	K	R	K	V	K	D	R	L	K	A	Y	V	R	D	P	Y	A	L	D	L	I	D	K	L	L	V	L	D	P	A	Q	R	I	D	S	D	D	A	L	N
Template Known Secondary structure		T	S	S				S	S																										S		S	S	G	G	G	S								T
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D