Job Description Q9Z0R6 Confidence 97.17% Date Wed Jul 10 14:14:37 BST 2013 Rank 422 Aligned Residues 135 % Identity 19% Template c3dd4A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:kv channel-interacting protein 4; PDBTitle: structural basis of kchip4a modulation of kv4.3 slow inactivation Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.				.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence		I	T	S	E	E	R	T	K	H	D	K	Q	F	D	N	L	K	P	S	G	G	Y	I	T	G	D	Q	A	R	T	F	F	L	Q	.	.	.	S	G	L	P	A	P	V	L	A	E	I	W	A	L	S	D	L	N	K	D	G	K	M
Query Conservation																																				.	.	.
Alig confidence																					.															.	.	.
Template Conservation																					.
Template Sequence		F	T	K	K	E	L	Q	I	L	Y	R	G	F	K	N	E	C	P	S	.	G	V	V	N	E	E	T	F	K	E	I	Y	S	Q	F	F	P	Q	G	D	S	T	T	Y	A	H	F	L	F	N	A	F	D	T	D	H	N	G	A	V
Template Known Secondary structure																T	T			S	.																S		S	S	S											T	T		S	S			S	S
Template Predicted Secondary structure																					.
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	Q	E	F	S	I	A	M	K	L	I	K	L	K	L	Q	G	Q	Q	L	P	V	V	L	P	P	I	M	K	Q	P	P	M	F	S	P	L	I	S	A	R	F	G	M	G	S	M	P	N	L	S	I	H	Q	P	L	P	P	V
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	F	E	D	F	I	K	G	L	S	I	L	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	I	A	T	P	L	S	S	A	T	S	G	T	S	I	P	P	L	M	M	P	A	P	L	V	P	S	V	S	T	S	S	L	P	N	G	T	A	S	L	I	Q	P	L	S	I	P	Y	S	S	S	T	L	P	H	A	S	S	Y
Query Conservation
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	M	M	G	G	F	G	G	A	S	I	Q	K	A	Q	S	L	I	D	L	G	S	S	S	S	T	S	S	T	A	S	L	S	G	N	S	P	K	T	G	T	S	E	W	A	V	P	Q	P	S	R	L	K	Y	R	Q	K	F	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	V	Q	E	K	L	N	W	A	F	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																																		134	.	.	.	.	.	140	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.				.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		S	L	D	K	G	M	S	G	Y	L	S	G	F	Q	A	R	N	A	L	L	Q	.	.	.	S	N	L	S	Q	T	Q	L	A	T	I	W	T	L	A	D	I	D	G	D	G	Q	L	K	A	E	E	F	I	L	A	M
Query Conservation																							.	.	.
Alig confidence																							.	.	.
Template Conservation
Template Sequence		L	Y	D	I	N	K	D	G	Y	I	T	K	E	E	M	L	D	I	M	K	A	I	Y	D	M	M	G	P	R	Q	H	V	E	T	F	F	Q	K	M	D	K	N	K	D	G	V	V	T	I	D	E	F	I	E	S	C
Template Known Secondary structure					T	T		S	S			B																			T											S	S		S	S	B
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D