Job Description Q9Z0R6 Confidence 100.00% Date Wed Jul 10 14:14:37 BST 2013 Rank 15 Aligned Residues 304 % Identity 27% Template c2z0qA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 3; PDBTitle: crystal structure of dh-ph domain of rhogef3(xpln) Resolution 1.79 Å Model Dimensions (Å) X:61.374 Y:82.658 Z:47.038

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		1162	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	M	Q	P	T	E	R	K	R	Q	G	Y	I	H	E	L	I	Q	T	E	E	R	Y	M	D	D	D	L	Q	L	V	I	E	V	F	Q	K	R	M	A	E	E	G	F	L	T	E	A	D	M	A	L	I	F	V	N	W	K	E
Query Conservation
Alig confidence																											.
Template Conservation																											.
Template Sequence		Q	V	L	T	A	K	E	I	K	R	Q	E	A	I	F	E	L	S	Q	G	E	E	D	L	I	.	E	D	L	K	L	A	K	K	A	Y	H	D	P	X	L	K	L	S	I	X	T	E	Q	E	L	N	Q	I	F	G	T	L	D	S
Template Known Secondary structure																											.										T							T	T	S	S										T	T
Template Predicted Secondary structure																											.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
		1222	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	M	S	N	T	K	L	L	R	A	L	R	V	R	K	K	T	G	G	E	K	M	P	V	Q	M	I	G	D	I	L	A	A	E	L	S	H	M	Q	A	Y	I	R	F	C	S	C	Q	L	N	G	A	T	L	L	Q	Q	K	T
Query Conservation
Alig confidence																			.	.	.																																.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.																																.	.	.	.	.	.	.	.	.
Template Sequence		L	I	P	L	H	E	E	L	L	S	Q	L	R	D	V	R	K	.	.	.	P	D	G	S	T	E	H	V	G	P	I	L	V	G	W	L	P	C	L	S	S	Y	D	S	Y	C	S	N	Q	V	A	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																			.	.	.	T	T	S			S										G	G	G	G	G												.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.																																.	.	.	.	.	.	.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.				80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		1282	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	D	T	D	F	K	E	F	L	K	K	L	A	S	D	P	R	C	K	G	M	P	L	S	S	F	L	L	K	P	M	Q	R	I	T	R	Y	P	L	L	I	R	S	I	L	E	N	T	P	Q	S	H	V	D	H	S	S	L	K
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	A	K	A	L	L	D	H	K	K	Q	D	H	R	V	Q	D	F	D	L	W	N	F	L	D	I	P	R	S	R	L	V	K	Y	P	L	L	L	R	E	I	L	R	H	T	P	N	D	N	P	D	Q	Q	H	L	E
Template Known Secondary structure		.	.	.	.	.									T	T									T	T	T	G	G	G																			T	S		T	T	S	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		1342	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	L	E	R	A	E	E	L	C	S	Q	V	N	E	G	V	R	E	K	E	N	S	D	R	L	E	W	I	Q	A	H	V	Q	C	E	G	L	A	E	Q	L	I	F	N	S	L	T	N	C	L	G	P	R	K	L	L	H	S	G
Query Conservation
Alig confidence																																														.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.	.	.	.	.	.	.
Template Sequence		E	A	I	N	I	I	Q	G	I	V	A	E	I	N	T	K	T	G	E	S	E	C	R	Y	Y	K	E	R	L	L	Y	L	E	E	G	Q	K	D	S	L	I	D	S	S	.	.	.	.	.	.	.	.	.	R	V	L	C	C	H	G
Template Known Secondary structure																																		S	T	T								T		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.										.	.	.	.	.	.	.
		1402	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	Y	K	T	K	S	N	K	E	L	H	A	F	L	F	N	D	F	L	L	L	T	Y	L	V	R	Q	F	A	A	A	S	G	H	E	K	L	F	N	S	K	S	S	A	Q	F	R	M	Y	K	T	P	I	F	L	N	E	V	L
Query Conservation
Alig confidence					.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	L	K	.	N	N	R	G	V	K	L	H	V	F	L	F	Q	E	V	L	V	I	T	R	A	V	T	H	N	E	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	C	Y	Q	L	Y	R	Q	P	I	P	V	K	D	L	T
Template Known Secondary structure					.		T	T	S									S	S											T	T	.	.	.	.	.	.	.	.	.	.	.	.	.							S	S					G	G	G
Template Predicted Secondary structure					.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.														.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
		1462	.	.	.	.	.																		.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	K	L	P	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	G	D	E	P	V	F	H	I	S	H	I	D	R	V	Y	T	L	R	T	D	N	I	N	E	R	T	A	W	V	Q	K	I	K	G	A
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	D	L	Q	D	G	E	V	R	L	G	G	S	L	A	F	S	N	N	E	R	V	K	N	F	F	R	V	S	F	K	N	G	S	Q	S	Q	T	H	S	L	Q	A	N	D	T	F	N	K	Q	Q	W	L	N	C	I	R	Q	A
Template Known Secondary structure							T	T	T	S				S					S					T	S	S									G	G	G									S	S
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		1505	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		338	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D