Job Description Q9Z0R6 Confidence 100.00% Date Wed Jul 10 14:14:37 BST 2013 Rank 1 Aligned Residues 366 % Identity 23% Template c2dx1A_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:rho guanine nucleotide exchange factor 4; PDBTitle: crystal structure of rhogef protein asef Resolution 2.36 Å Model Dimensions (Å) X:74.628 Y:68.268 Z:48.019

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		1092	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	I	A	M	Y	D	Y	M	A	N	N	E	D	E	L	N	F	S	K	G	Q	L	I	N	V	M	N	K	D	D	P	D	W	W	Q	G	E	T	N	G	L	T	G	L	F	P	S	N	Y	V	K	M	T	T	D	S	D	P	S
Query Conservation
Alig confidence																																																												.	.
Template Conservation																																																												.	.
Template Sequence		C	A	E	A	L	W	D	H	V	T	X	D	D	Q	E	L	G	F	K	A	G	D	V	I	E	V	X	D	A	T	N	R	E	W	W	W	G	R	V	A	D	G	E	G	W	F	P	A	S	F	V	R	L	R	V	N	Q	D	.	.
Template Known Secondary structure						S	S		B					T	T	B			B		T	T										S	S	S							S	S							G	G	G					S				.	.
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		1152	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.		.	.	.	.	.	.	1210
Predicted Secondary structure																																																						.
Query SS confidence																																																						.
Query Sequence		Q	Q	W	C	A	D	L	Q	A	L	D	T	M	Q	P	T	E	R	K	R	Q	G	Y	I	H	E	L	I	Q	T	E	E	R	Y	M	D	D	D	L	Q	L	V	I	E	V	F	Q	K	R	M	A	E	.	E	G	F	L	T	E	A
Query Conservation																																																						.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																									.																	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																									.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	A	Q	S	S	K	D	Q	X	R	T	N	V	I	N	E	I	L	S	T	E	R	D	Y	I	.	K	H	L	R	D	I	C	E	G	Y	V	R	Q	C	R	K	R	A	D	X	F	S	E	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.																									.										T					T	T		T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																									.
Template SS confidence
													206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		1211	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	A	L	I	F	V	N	W	K	E	L	I	M	S	N	T	K	L	L	R	A	L	R	V	R	K	K	T	G	G	E	K	M	P	V	Q	M	I	G	D	I	L	A	A	E	L	S	H	M	Q	A	Y	I	R	F	C	S	C	Q
Query Conservation
Alig confidence																														.	.
Template Conservation																														.	.
Template Sequence		Q	L	R	T	I	F	G	N	I	E	D	I	Y	R	C	Q	K	A	F	V	K	A	L	E	Q	R	F	N	.	.	R	E	R	P	H	L	S	E	L	G	A	C	F	L	E	H	Q	A	D	F	Q	I	Y	S	E	Y	C	N	N	H
Template Known Secondary structure								T	T																	T	T			.	.	S	S	S	G	G	G										T						T
Template Predicted Secondary structure																														.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.			.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		1271	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	G	A	T	L	L	Q	Q	K	T	D	E	D	T	D	F	K	E	F	L	K	K	L	A	S	D	P	R	C	K	G	M	P	L	S	S	F	L	L	K	P	M	Q	R	I	T	R	Y	P	L	L	I	R	S	I	L	E	N	T
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		P	N	A	C	V	E	L	S	R	L	T	.	K	L	S	K	Y	V	Y	F	F	E	A	C	R	L	L	Q	K	X	I	D	I	S	L	D	G	F	L	L	T	P	V	Q	K	I	C	K	Y	P	L	Q	L	A	E	L	L	K	Y	T
Template Known Secondary structure													.	T																T			S																											T	S
Template Predicted Secondary structure													.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		1331	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	S	H	V	D	H	S	S	L	K	L	A	L	E	R	A	E	E	L	C	S	Q	V	N	E	G	V	R	E	K	E	N	S	D	R	L	E	W	I	Q	A	H	V	Q	C	E	G	L	A	E	Q	L	I	F	N	S	L	T	N
Query Conservation
Alig confidence																																															.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.
Template Sequence		H	P	Q	H	R	D	F	K	D	V	E	A	A	L	H	A	X	K	N	V	A	Q	L	I	N	E	R	K	R	R	L	E	N	I	D	K	I	A	Q	W	Q	S	S	I	E	.	.	.	.	.	.	.	.	D	W	E	G	E	D	L
Template Known Secondary structure			T	T		T	T																																						S	B	.	.	.	.	.	.	.	.	S			S	S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.
Template SS confidence
		371	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.									.	.	.	.	420	.	.
		1391	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410					.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.
Query SS confidence																						.	.	.	.
Query Sequence		C	L	G	P	R	K	L	L	H	S	G	K	L	Y	K	T	K	S	N	K	.	.	.	.	E	L	H	A	F	L	F	N	D	F	L	L	L	T	Y	L	V	R	Q	F	A	A	A	S	G	H	E	K	L	F	N	S	K	S	S	A
Query Conservation																						.	.	.	.
Alig confidence																						.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	R	S	S	E	L	I	Y	S	G	E	L	T	R	V	T	Q	P	Q	A	K	S	Q	Q	R	X	F	F	L	F	D	H	Q	L	I	Y	C	K	K	D	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R
Template Known Secondary structure																			S	S	S	S											T	T									T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.																.	.
		1447	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	R	M	Y	K	T	P	I	F	L	N	E	V	L	V	K	L	P	T	D	P	S	G	D	E	P	V	F	H	I	S	H	I	D	R	V	Y	T	L	R	T	D	N	I	N	E	R	T	A	W	V	Q	K	I	K	G	A	S	E
Query Conservation
Alig confidence																		.	.	.	.	.	.	.											.	.	.	.
Template Conservation																		.	.	.	.	.	.	.											.	.	.	.
Template Sequence		D	V	L	Y	Y	K	G	R	L	D	X	D	G	L	E	V	.	.	.	.	.	.	.	V	I	K	N	A	F	R	L	H	S	.	.	.	.	H	L	L	C	T	R	K	P	E	Q	K	Q	R	W	L	K	A	F	A	R	E	R	E
Template Known Secondary structure		T										T	T	T				.	.	.	.	.	.	.											.	.	.	.						S
Template Predicted Secondary structure																		.	.	.	.	.	.	.											.	.	.	.
Template SS confidence
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.								.	.	.	.	.	.	490	.	.	.					.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.
		1507	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		536	.