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Job DescriptionQ9ERV7
Confidence99.89%DateWed Jul 10 14:21:35 BST 2013
Rank34Aligned Residues238
% Identity24%Templatec3v47B_
PDB info PDB header:immune systemChain: B: PDB Molecule:toll-like receptor 5b and variable lymphocyte receptor b.61 PDBTitle: crystal structure of the n-tetminal fragment of zebrafish tlr5 in2 complex with salmonella flagellin
Resolution2.47 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.........70.........80.........90.........100...
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Query Sequence  NLDLRPGGCHRLQYLCSQQPPQLLQVEFLRLSTHEDPQLLDDTLAKVPWSLLRLRSLVLK
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Template Sequence  NAICINRGLHQVPELP. . . . . . . AHVNYVDLSLNSIAELNETSF. . . . SRLQDLQFLKVE
Template Known Secondary structure 
TTS

SS




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SS



TTTT....TT
TT



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   31........40...... ...50.........60....... ..70.........
 
   104.....110.........120.........130.........140....... ..150.........160..
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Query Sequence  GGQSRGALGACLHGTLTTLPAGLSDLACLAHLDLSFNRLETLPT. CVPELHGLDALLLSH
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Template Conservation   
 
   
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Template Sequence  QQTPGLVIR. . . . . . . . . . NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ
Template Known Secondary structure 

STT

..........TTTTTT
TT


TT
TT

TTTTTT
TT


TT
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   80........ .90.........100.........110.........120.........
 
   163.
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Query Sequence  NH. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                              
Template Sequence  CNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE
Template Known Secondary structure  S


TSSTTTT
TT



SS


S



GGGGG
TT


TT

BS


TT
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   130.........140.........150.........160.........170.........180.........
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF
Template Known Secondary structure  TTGGGTT

TT
B
TT
STT
S


TTTT

TTS


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   190.........200.........210.........220.........230.........240.........
 
   165....170.........180......... 190..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LSELPEALGALPALTFLTVTHNRLE. RLP
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Template Conservation                                                              
Template Sequence  FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK
Template Known Secondary structure  TTT


TT
TTTS

TT

SS



TTTTGGGTTS




SS



T
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   250.........260.........270.........280.........290.........300.........
 
   193......200.........210.... .....220.........230....... ..240.........250
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Query Sequence  LTLGSLSTLQRLDLSENLLDTI. PSEIGNLRSLSELNLASNRLQSL. PASLAGLRSLRLL
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Template Conservation          
                       
  
 
                  
  
Template Sequence  SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL
Template Known Secondary structure  TTTTT
TT


TTS



TTTTTT
TT



SS



GGGGTT
TT

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   310.........320.........330.........340.........350.........360.........
 
   251........260 .........270.........280..... ....290.........300..
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Query Sequence  VLHSNLLTSV. PTGLVHLPLITRLDLRDNRLRDLPA. . . . ELLDAPFVRLQGNPLGE
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Template Conservation   

 
 
  
       
  
  
 

 
 
  
       
  
  
 

 
   
Template Sequence  DLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC
Template Known Secondary structure 

SS



TTTTTT
TT



SS

S


TTTTTT
TT



SS
B

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   370.........380.........390.........400.........410.........420......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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