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Job DescriptionQ9ERV7
Confidence99.58%DateWed Jul 10 14:21:35 BST 2013
Rank93Aligned Residues238
% Identity24%Templatec2z66A_
PDB info PDB header:immune systemChain: A: PDB Molecule:variable lymphocyte receptor b, toll-like receptor 4; PDBTitle: crystal structure of the vt3 hybrid of human tlr4 and hagfish vlrb.61
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.........70.........80.........90.........100...
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Query Sequence  NLDLRPGGCHRLQYLCSQQPPQLLQVEFLRLSTHEDPQLLDDTLAKVPWSLLRLRSLVLK
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Template Sequence  EIRCNSKGLTSVPTGIP. . . . . . SSATRLELESNKLQSLPHGVF. . . . DKLTQLTKLSLS
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SS

SS

S


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TTTT....TT
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   34.....40.........50 .........60.........70. ........80...
 
   104.....110.........120.........130.........140.........150.........160...
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Query Sequence  GGQSRGALGACLHGTLTTLPAGLSDLACLAHLDLSFNRLETLPTCVPELHGLDALLLSHN
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Template Sequence  SNGLSFKGCCS. . . . . . . . . QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS
Template Known Secondary structure  SS


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S
ST
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   84.....90.... .....100.........110.........120.........130....
 
   164.....170. ........180.........190.... .....200.........210.. ......
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Query Sequence  HLSELPEA. . LGALPALTFLTVTHNRLERLPLT. LGSLSTLQRLDLSENLLD. . TIPSEI
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Template Conservation                                                              
Template Sequence  NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF
Template Known Secondary structure  SSTTTTTTTT
TT


TTS


STTTTTT
TT


TT
GGG
S

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   433......440.........450.........460.........470.........480.........490..
 
   219220.........230....... ..240.........250.........260... ......270......
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Query Sequence  GNLRSLSELNLASNRLQSL. PASLAGLRSLRLLVLHSNLLTSVPTG. LVHLPLITRLDLR
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Template Sequence  TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS
Template Known Secondary structure  TT
TT


TTS



TTTTTT
TT


TTS

SB

SGGGTT
TT


T
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   493......500.........510.........520.........530.........540.........550..
 
   277..280...... ...290.........300
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Query Sequence  DNRLRDLPAE. . . . . LLDAPFVRLQGNPL
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Template Sequence  LNHIMTSKKQELQHFPSSLAFLNLTQNDF
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B
SSSS




TT


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   553......560.........570.........580.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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