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Job DescriptionQ9ERV7
Confidence98.64%DateWed Jul 10 14:21:35 BST 2013
Rank123Aligned Residues135
% Identity24%Templatec1kooD_
PDB info PDB header:rna binding proteinChain: D: PDB Molecule:tip associating protein; PDBTitle: the crystal structure and mutational analysis of a novel2 rna-binding domain found in the human tap nuclear mrna3 export factor
Resolution3.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   137..140.........150.. .......160.........170.........180.........190....
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Query Sequence  LSFNRLETLPTCVPEL. . HGLDALLLSHNHLSELPEALGALPALTFLTVTHNRLERLPLT
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Template Sequence  LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSD. . . PDLVAQNIDVVLNRRSSMAATLRII
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TTTT
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   204.....210.........220.........230..... ....240.........250.........260
 
   195....200.........210....... ..220.........230......... 240.........250
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Query Sequence  LGSLSTLQRLDLSENLLDTIPSE. . . IGNLRSLSELNLASNRLQSLPA. SLAGLRSLRLL
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Template Sequence  EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL
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GGGGGGTTT
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TTGGGGG

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   261........270.........280.........290.........300.........310.........320
 
   251........260. ........270....
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Query Sequence  VLHSNLLTSVP. . . . . . . . TGLVHLPLITRLD
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Template Sequence  WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD
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   321........330.........340.........350..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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