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Job DescriptionQ9ERV7
Confidence96.09%DateWed Jul 10 14:21:35 BST 2013
Rank140Aligned Residues176
% Identity22%Templatec1fs2C_
PDB info PDB header:ligaseChain: C: PDB Molecule:skp2; PDBTitle: insights into scf ubiquitin ligases from the structure of2 the skp1-skp2 complex
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   85....90.........100.........110.........120.........130.........140....
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Query Sequence  DTLAKVPWSLLRLRSLVLKGGQSRGALGACLHGTLTTLPAGLSDLACLAHLDLSFNRLET
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Template Sequence  STLHGILSQCSKLQNLSLEGLRLSD. . . . . . . . . . . PIVNTLAKNSNLVRLNLSGCSGFS
Template Known Secondary structure  TT
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S
TT
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TT
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   208.210.........220.........230.. .......240.........250......
 
   145....150.........160.........170. ........180......... 190...
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Query Sequence  . . . LPTCVPELHGLDALLLSHNHLSELPEA. . . . LGALPALTFLTVTHNRLE. . . . RLPL
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Template Conservation               
                             
             
  
Template Sequence  EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST
Template Known Secondary structure 
TT





TT

S
TT





TTT

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   257..260.........270.........280.........290.........300.........310......
 
   194.....200.........210.. .......220.........230. ..... ...240.........
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Query Sequence  TLGSLSTLQRLDLSENLLD. . TIPSEIGNLRSLSELNLAS. NRLQS. LPASLAGLRSLRL
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Template Sequence  LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT
Template Known Secondary structure 
TT
S
TT
TT

GGGTT
TT


TT
TTS
GGGGGGGGG
TT

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   317..320.........330.........340.........350.........360.........370......
 
   250........ .260.........270..
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Query Sequence  LVLHSNLLT. . SVPTGLVHLPLITR
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Template Sequence  LQVFGI. VPDGTLQLLKEALPHLQI
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TTS
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   377..380.. .......390.........400
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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