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Job DescriptionQ9ERV7
Confidence99.81%DateWed Jul 10 14:21:35 BST 2013
Rank53Aligned Residues205
% Identity30%Templated1ogqa_
SCOP infoLeucine-rich repeat, LRR (right-handed beta-alpha superhelix) L domain-like Polygalacturonase inhibiting protein PGIP
Resolution1.7

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   65....70.........80. ........90.........100.........110.........120..
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Query Sequence  QLLQVEFLRLSTHEDPQ. . LLDDTLAKVPWSLLRLRSLVLKGGQSRGALGACLHGTLTTL
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Template Sequence  QTYRVNNLDLSGLNLPKPYPIPSSLA. . . . NLPYLNFLYIGGINNLV. . . . . . . . . . GPI
Template Known Secondary structure  S






SS


GGGG....G
TT
STT..........S

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   48.50.........60.........70... ......80.........90 ...
 
   123......130.........140.... .....150.........160....... ..170.........180
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Query Sequence  PAGLSDLACLAHLDLSFNRLET. LPTCVPELHGLDALLLSHNHLSE. LPEALGALPALTF
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Template Conservation        
  
  
 

 
                                          
Template Sequence  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG
Template Known Secondary structure 
GGGGG
TT
S



GGGGG
TT



SSS


GGGGG
TT

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   94.....100.........110.........120.........130.........140.........150...
 
   181........190........
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Query Sequence  LTVTHNRLERLPLTLGSL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA
Template Known Secondary structure 

SS



GGGG


TT



SS

GGGGG


S

SS

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   154.....160.........170.........180.........190.........200.........210...
 
   199200.........210.........220.........230..... ....240.........250
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Query Sequence  . . . . . . . STLQRLDLSENLLDTIPSEIGNLRSLSELNLASNRLQ. SLPASLAGLRSLRLL
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Template Sequence  SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL
Template Known Secondary structure  GGG

TTS

S

SS

BGGG



TT



SS




GGGGG
TT

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   214.....220.........230.........240.........250.........260.........270...
 
   251....... .260.........270......... 280....
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Query Sequence  VLHSNLLT. SVPTGLVHLPLITRLDLRDNR. LRDLP
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Template Sequence  NVSFNNLCGEIPQ. GGNLQRFDVSAYANNKCLCGSP
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SS


.STTGGGS
GGGT
SSSSTT
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   274.....280...... ...290.........300........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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