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Job DescriptionQ9ERV7
Confidence99.66%DateWed Jul 10 14:21:35 BST 2013
Rank83Aligned Residues196
% Identity29%Templatec2z62A_
PDB info PDB header:immune systemChain: A: PDB Molecule:toll-like receptor 4, variable lymphocyte receptor b; PDBTitle: crystal structure of the tv3 hybrid of human tlr4 and hagfish vlrb.61
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   105....110.........120.........130.........140..... ....150.........160...
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Query Sequence  GQSRGALGACLHGTLTTLPAGLSDLACLAHLDLSFNRLETL. PTCVPELHGLDALLLSHN
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Template Sequence  EVVPNITYQCMELNFYKIPDNL. . PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC
Template Known Secondary structure  TTT
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   31........40.........50.. .......60.........70.........80........
 
   164.....170. ........180......... 190.........200.........210.... .....220
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Query Sequence  HLSELPEA. LGALPALTFLTVTHNRLE. RLPLTLGSLSTLQRLDLSENLLDTI. PSEIGN
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Template Sequence  EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH
Template Known Secondary structure 



TTTTTT
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   8990.........100.........110.........120.........130.........140........
 
   221........230.........240 .........250
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Query Sequence  LRSLSELNLASNRLQSLPAS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LAGLRSLRLL
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Template Sequence  LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL
Template Known Secondary structure 
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GGGGG
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GGGGT
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   149150.........160.........170.........180.........190.........200........
 
   251........260.........270.........280..... ....290.........300..
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Query Sequence  VLHSNLLTSVPTGLVHLPLITRLDLRDNRLRDLPA. . . . ELLDAPFVRLQGNPLGE
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Template Sequence  DLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC
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TTTTTT

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   209210.........220.........230.........240.........250.........260....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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