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Job DescriptionQ9ERV7
Confidence99.75%DateWed Jul 10 14:21:35 BST 2013
Rank70Aligned Residues173
% Identity32%Templatec2z80A_
PDB info PDB header:immune systemChain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   128.130.........140.........150.........160.........170. ........180......
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Query Sequence  DLACLAHLDLSFNRLETLPTCVPELHGLDALLLSHNHLSELPEA. LGALPALTFLTVTHN
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Template Sequence  SCDRNGICKGSSGSLNSIPSGL. . TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN
Template Known Secondary structure 
TTS

STT
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   2930.........40.........50 .........60.........70.........80......
 
   187..190.... .....200.........210...... ...220.........230.........240
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Query Sequence  RLERLPLT. LGSLSTLQRLDLSENLLDTIPS. EIGNLRSLSELNLASNRLQSLPAS. . . .
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Template Sequence  GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFS
Template Known Secondary structure 



TTTTTT
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   87..90.........100.........110.........120.........130.........140......
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH
Template Known Secondary structure  T
TT

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   147..150.........160.........170.........180.........190.........200......
 
   241........250.........260...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LAGLRSLRLLVLHSNLLTSVPTG
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Template Conservation                                             
  
 
  
 
      
Template Sequence  MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSTNSLIKKFTFRNVKITDESLFQVMKL
Template Known Secondary structure 
S
STTTTTS
B
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S
B

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   207..210.........220.........230.........240.........250.........260......
 
   264.....270.........280..... ....290.........300..
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Query Sequence  LVHLPLITRLDLRDNRLRDLPA. . . . ELLDAPFVRLQGNPLGE
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Template Sequence  LNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC
Template Known Secondary structure  T
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TTTTTT
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   273......280.........290.........300.........310.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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