Return to main results Retrieve Phyre Job Id

Job DescriptionQ9ERV7
Confidence99.91%DateWed Jul 10 14:21:35 BST 2013
Rank26Aligned Residues177
% Identity27%Templatec3j0aA_
PDB info PDB header:immune systemChain: A: PDB Molecule:toll-like receptor 5; PDBTitle: homology model of human toll-like receptor 5 fitted into an electron2 microscopy single particle reconstruction
Resolution26.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   105....110.........120.........130.........140...... ...150.........160...
Predicted Secondary structure 


































.









Query SS confidence 









































.
















Query Sequence  GQSRGALGACLHGTLTTLPAGLSDLACLAHLDLSFNRLETLP. TCVPELHGLDALLLSHN
Query Conservation 
 
         
 
  

  
  
  
  



 
 
  

.  
  
  
  
 
  
Alig confidence 


















...



















.
















Template Conservation 
        

   

 

...  
  
  
 

 
 
  
    
  
  
  
 

 
Template Sequence  CSFDGRIAFYRFCNLTQVP. . . QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ
Template Known Secondary structure 
BTTTS


SS


...SS
TT

S




SSS
SS

S
S
TT
Template Predicted Secondary structure 











...

























Template SS confidence 



























































   24.....30.........40.. .......50.........60.........70.........80
 
   164.. ...170. ........180.........190. ........200.........210.... ...
Predicted Secondary structure 


.


.














.















...
Query SS confidence 


.




.



















.






















. . .


Query Sequence  HLS. ELPEA. LGALPALTFLTVTHNRLERL. PLTLGSLSTLQRLDLSENLLDTI. . . PSE
Query Conservation   
 . 

  .
  
  
  
 
  
 
  
.
  
  
  
  
 

 
 
  
...
  
Alig confidence 


.




.



















.






















...


Template Conservation   
   
    
  
  
  
 

 
 
  
    
  
  
  
 

 
 

        
Template Sequence  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY
Template Known Secondary structure 




TTTTSS
TT


TT




TTSS
S
SS



TT


SS

STT

Template Predicted Secondary structure 








































Template SS confidence 



























































   81........90.........100.........110.........120.........130.........140
 
   218.220.........230....... ..240.........250.........260. ........270....
Predicted Secondary structure 















..
















.





Query SS confidence 



















. .























.












Query Sequence  IGNLRSLSELNLASNRLQSL. . PASLAGLRSLRLLVLHSNLLTSVP. TGLVHLPLITRLD
Query Conservation 
  
  
  
 

 
 
  
..
  
  
  
  
 
  
 
  

.  
  
  
  

Alig confidence 



















..























.












Template Conservation     
  
  
 

 
 
           
  
  
 

 
 
                  
Template Sequence  FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF
Template Known Secondary structure 
SS
SS

S








GGGGT
SS

SS





SGGG
SS

Template Predicted Secondary structure 
















































Template SS confidence 



























































   141........150.........160.........170.........180.........190.........200
 
   275....280....
Predicted Secondary structure 









Query SS confidence 









Query Sequence  LRDNRLRDLP
Query Conservation 

 
 
  

Alig confidence 









Template Conservation            
Template Sequence  FSLAANSLYS
Template Known Secondary structure 


SBS

Template Predicted Secondary structure 









Template SS confidence 









   201........210
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D