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Job DescriptionQ9ERV7
Confidence99.94%DateWed Jul 10 14:21:35 BST 2013
Rank10Aligned Residues187
% Identity25%Templatec1m9sA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:internalin b; PDBTitle: crystal structure of internalin b (inlb), a listeria2 monocytogenes virulence protein containing sh3-like3 domains.
Resolution2.65 Å
Model Dimensions (Å)X:67.839 Y:49.449 Z:35.180

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   73......80.........90.........100.........110.........120.........130..
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Query Sequence  RLSTHEDPQLLDDTLAKVPWSLLRLRSLVLKGGQSRGALGACLHGTLTTLPAGLSDLACL
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Template Sequence  NLKKKSVTDAVT. . . . . . QNELNSIDQIIANNSDIKSV. . . . . . . . . . . . . QGIQYLPNV
Template Known Secondary structure  TT
S
TTS
......TT



B
TT





.............TTGGG
TT
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   60.........70. ........80.........90. ........100
 
   133......140.........150.........160.........170.........180.........190..
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Query Sequence  AHLDLSFNRLETLPTCVPELHGLDALLLSHNHLSELPEALGALPALTFLTVTHNRLERLP
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Template Sequence  TKLFLNGNKLTDIKP. LTNLKNLGWLFLDENKIKDLS. SLKDLKKLKSLSLEHNGISDI.
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TTS




GG.GGG
TT



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T.TSTT
TT


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   101........110..... ....120.........130...... ...140.........150.......
 
   193......200.........210.........220.........230.........240.........250..
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Query Sequence  LTLGSLSTLQRLDLSENLLDTIPSEIGNLRSLSELNLASNRLQSLPASLAGLRSLRLLVL
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Template Sequence  NGLVHLPQLESLYLGNNKITDI. TVLSRLTKLDTLSLEDNQISDI. VPLAGLTKLQNLYL
Template Known Secondary structure  GGGGG
TT
S

SS




.GGGGS
TT
S

SS




.GGGTT
TT


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   158.160.........170......... 180.........190.........200. ........210.....
 
   253......260.........270.........280....
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Query Sequence  HSNLLTSVPTGLVHLPLITRLDLRDNRLRDLP
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Template Sequence  SKNHISDL. RALAGLKNLDVLELFSQECLNKP
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SS


B
.GGGTT
TT
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   216...220... ......230.........240......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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