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Job DescriptionQ9ERV7
Confidence99.81%DateWed Jul 10 14:21:35 BST 2013
Rank56Aligned Residues223
% Identity27%Templatec3o6nA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:apl1; PDBTitle: crystal structure of apl1 leucine-rich repeat domain
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   63......70.........80.........90.........100.........110.........120..
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Query Sequence  PPQLLQVEFLRLSTHEDPQLLDDTLAKVPWSLLRLRSLVLKGGQSRGALGACLHGTLTTL
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Template Sequence  DITLNNQKIVTFKNSTMRKLPAALL. . . . DSFRQVELLNLNDLQIEE. . . . . . . . . . . ID
Template Known Secondary structure  SGGG


SS
S
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S
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   174.....180.........190........ .200.........210...... ..
 
   123......130.........140....... ..150.........160.........170.....
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Query Sequence  PAGLSDLACLAHLDLSFNRLETLPT. CVPELHGLDALLLSHNHLSELPEALGAL. . . . . .
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Template Sequence  TYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT
Template Known Secondary structure  TTTTTT
TT



SS





TTTTTT
TT



SS





TTTTTT
TT

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   219220.........230.........240.........250.........260.........270........
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPI
Template Known Secondary structure 

SS


B

TTTTSS
TT



SS

SB

GGG
TT
S

SS

S

S
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   279280.........290.........300.........310.........320.........330........
 
   176...180.........190.........200.........210.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . PALTFLTVTHNRLERLPLTLGSLSTLQRLDLSENLLDTIP
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Template Sequence  AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY
Template Known Secondary structure  S
S

SS






SS



SS




GGGGG
TT
S

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S
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   339340.........350.........360.........370.........380.........390........
 
   216...220.........230.........240.........250.........260.........270.....
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Query Sequence  SEIGNLRSLSELNLASNRLQSLPASLAGLRSLRLLVLHSNLLTSVPTGLVHLPLITRLDL
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Template Conservation                    
            
  
 
  
    
      
  
  
 
Template Sequence  HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYL
Template Known Secondary structure  GGGTT
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SS



SSS

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GGGTT
S
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   399400.........410.........420.........430.........440.........450........
 
   276...280..... ....290.........300
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Query Sequence  RDNRLRDLPA. ELLDAPFVRLQGNPL
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Template Sequence  DHNSIVTLKLSTHHTLKNLTLSHNDW
Template Known Secondary structure 
SS







TT


S

SS
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   459460.........470.........480....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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