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Job DescriptionQ9ERV7
Confidence99.91%DateWed Jul 10 14:21:35 BST 2013
Rank27Aligned Residues228
% Identity27%Templatec4glpA_
PDB info PDB header:immune systemChain: A: PDB Molecule:monocyte differentiation antigen cd14; PDBTitle: the crystal structure of soluble human cd14 reveals a bent solenoid2 with a hydrophobic amino-terminal pocket.
Resolution4.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   62.......70.........80.........90.........100.........110.........120.
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Query Sequence  QPPQLLQVEFLRLSTHEDPQLLDDTLAKVPWSLLRLRSLVLKGGQSRGALGACLHGTLTT
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Template Sequence  DTVKALRVRRLTVGAAQVPAQLLVGALRVL. AYSRLKELTLEDLKITG. . . . . . . . . . . T
Template Known Secondary structure  GGGSS




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   84.....90.........100.........110... ......120.........130 .
 
   122.......130.........140..... ....150.........160.........170. ..
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Query Sequence  LPAGLSDLACLAHLDLSFNRLETL. . . . . . . PTCVPELHGLDALLLSHNHLSELPEA. LG
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Template Sequence  MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR
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B

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   132.......140.........150.........160.........170.........180.........190.
 
   174.....180.........190 .........200.........210....... ..220....
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Query Sequence  ALPALTFLTVTHNRLER. . . . . LPLTLGSLSTLQRLDLSENLLDTIPSE. . . . IGNLRSL
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Template Sequence  AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQP
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TT



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TT
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   192.......200.........210.........220.........230.........240.........250.
 
   225....230........ .240.........250.........260.........270.........280
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Query Sequence  SELNLASNRLQSLP. . . . ASLAGLRSLRLLVLHSNLLTSVPTGLVHLPLITRLDLRDNRL
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Template Sequence  HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL. . PAKLRVLDLSSNRL
Template Known Secondary structure  SS
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   252.......260.........270.........280.........290..... ....300.........
 
   281.... ....290.........300...
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Query Sequence  RDLPA. . ELLDAPFVRLQGNPLGEA
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Template Sequence  NRAPQPDELPEVDNLTLDGNPFLVP
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   310.........320.........330....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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