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Job DescriptionQ9ERV7
Confidence99.85%DateWed Jul 10 14:21:35 BST 2013
Rank39Aligned Residues199
% Identity26%Templatec2omwA_
PDB info PDB header:cell invasion/cell adhesionChain: A: PDB Molecule:internalin-a; PDBTitle: crystal structure of inla s192n y369s/mec1 complex
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   64.....70.........80.........90.........100.........110.........120...
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Query Sequence  PQLLQVEFLRLSTHEDPQLLDDTLAKVPWSLLRLRSLVLKGGQSRGALGACLHGTLTTLP
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Template Sequence  TALAEKMKTVLGKTNVTDTVS. . . . . . QTDLDQVTTLQADRLG. . . . . . . . . . . . IKSID
Template Known Secondary structure  TT
S
TTS
......TT


TTS
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T
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   51........60.........70. ........80....... ..90..
 
   124.....130.........140.........150.........160.........170.........180
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Query Sequence  AGLSDLACLAHLDLSFNRLETLPTCVPELHGLDALLLSHNHLSELPEALGALPALTF. . .
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Template Conservation  . 
  
  
  
 

 
 
  
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Template Sequence  . GVEYLNNLTQINFSNNQLTDITP. LKNLTKLVDILMNNNQIADITP. LANLTNLTGLTL
Template Known Secondary structure  .TGGG
TT



SS




GG.GTT
TT



SS




GG.GTT
TT
S
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   93......100.........110..... ....120.........130....... ..140.........
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                  
       
                                   
Template Sequence  FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTL
Template Known Secondary structure 
SS




GGGTT
TT
S


GGGTT
TT
SS



GGGTT
TT
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   150.........160.........170.........180.........190.........200.........
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL
Template Known Secondary structure 

TTS




GGGGG
TT
S

SS




GGGGG
TT


TTS




GGG
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   210.........220.........230.........240.........250.........260.........
 
   181.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LTVTHNRL
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Template Conservation                                                              
Template Sequence  ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL
Template Known Secondary structure  GG
TT
S

SS




GGGTT
TT
S

SS




GGGTT
TT
S

SS

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   270.........280.........290.........300.........310.........320.........
 
   189190.........200.........210.........220.........230.........240........
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Query Sequence  ERLPLTLGSLSTLQRLDLSENLLDTIPSEIGNLRSLSELNLASNRLQSLPASLAGLRSLR
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Template Sequence  EDI. SPISNLKNLTYLTLYFNNISDI. SPVSSLTKLQRLFFSNNKVSDVSS. LANLTNIN
Template Known Secondary structure 


.GGGGG
TT
S

SS




.GGGTT
TT
S

SS




GG.GGG
TT

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   330.. .......340.........350.... .....360.........370........ .380......
 
   249250.........260.........270.........280.......
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Query Sequence  LLVLHSNLLTSVPTGLVHLPLITRLDLRDNRLRDLPAEL
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Template Sequence  WLSAGHNQISDLTP. LANLTRITQLGLNDQAWTNAPVNY
Template Known Secondary structure 

SS


B
GG.GTT
TT








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   387..390.........400 .........410.........420....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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