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Job DescriptionQ9ERV7
Confidence99.75%DateWed Jul 10 14:21:35 BST 2013
Rank72Aligned Residues188
% Identity23%Templatec3o53A_
PDB info PDB header:protein bindingChain: A: PDB Molecule:protein lrim1; PDBTitle: crystal structure of lrim1 leucine-rich repeat domain
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8990.........100.........110.........120.........130.........140..... ..
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Query Sequence  KVPWSLLRLRSLVLKGGQSRGALGACLHGTLTTLPAGLSDLACLAHLDLSFNRLETL. PT
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Template Sequence  EIKQNGNRYKIEKVTDSSL. . . . . . . . . . . KQALASLRQSAWNVKELDLSGNPLSQISAA
Template Known Secondary structure  TTS

TTT...........TTGGG
S
TTS





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   26...30.........40.... .....50.........60.........70....
 
   148.150.........160.........170.....
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Query Sequence  CVPELHGLDALLLSHNHLSELPEALGAL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS
Template Known Secondary structure  TT
TT


TTS

TT
TT



SS
TT



SS

S
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   75....80.........90.........100.........110.........120.........130....
 
   176...180.........190.........200....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PALTFLTVTHNRLERLPLTLGSLSTLQRL
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Template Sequence  RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE
Template Known Secondary structure 


SS


SS


SGGGB
TGGGSS
TTS


GGGGGGGTTT

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   135....140.........150.........160.........170.........180.........190....
 
   205....210.... .....220.........230.........240.........250.........260...
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Query Sequence  DLSENLLDTI. PSEIGNLRSLSELNLASNRLQSLPASLAGLRSLRLLVLHSNLLTSVPTG
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Template Sequence  HLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA
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TTS







TT



SS



GGGGGGTT
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TT
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   195....200.........210.........220.........230.........240.........250....
 
   264.....270.........280. ......
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Query Sequence  LVHLPLITRLDLRDNRLR. DLPAEL
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Template Sequence  LRFSQNLEHFDLRGNGFHCGTLRDF
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TT


TT


B
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   255....260.........270.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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