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Job DescriptionQ9ERV7
Confidence99.84%DateWed Jul 10 14:21:35 BST 2013
Rank40Aligned Residues196
% Identity23%Templatec3v44A_
PDB info PDB header:immune systemChain: A: PDB Molecule:toll-like receptor 5b and variable lymphocyte receptor b.61 PDBTitle: crystal structure of the n-terminal fragment of zebrafish tlr5
Resolution2.83 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   104.....110.........120.........130.........140........ .150.........160..
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Query Sequence  GGQSRGALGACLHGTLTTLPAGLSDLACLAHLDLSFNRLETLPTC. VPELHGLDALLLSH
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Template Sequence  ECSVIGYNAICINRGLHQVPE. . . LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ
Template Known Secondary structure 

TT
TTS

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TT



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TTTSSS
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   24.....30.........40.... .....50.........60.........70.........80
 
   163..... .170.........180.........190.... .....200.........210.........
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Query Sequence  NHLSEL. . PEALGALPALTFLTVTHNRLERLPLT. LGSLSTLQRLDLSENLLDTIPSEIG
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Template Conservation 
 
   
    
  
  
  
 

 
 
          
  
  
               
Template Sequence  QTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGN
Template Known Secondary structure 
SS


TTTTTT
TT


TT
TT

TTTTTT
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TSS
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   81........90.........100.........110.........120.........130.........140
 
   220..
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Query Sequence  NLR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                              
Template Sequence  FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT
Template Known Secondary structure  TTTT
TT


TTS


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GGGGG
TT


TT

BS


TTTTGGGTT
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   141........150.........160.........170.........180.........190.........200
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                              
Template Sequence  LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS
Template Known Secondary structure 
TT
B
TT
STT
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TTTT

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TTT

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   201........210.........220.........230.........240.........250.........260
 
   223......230....... ..240.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SLSELNLASNRLQSL. PASLAGLRSLRL
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Template Conservation                                                           
  
Template Sequence  LILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQ
Template Known Secondary structure 
TT
TT
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SSSTT




TTTTGGGGGS



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TTTTTT
TT

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   261........270.........280.........290.........300.........310.........320
 
   250.........260 .........270.........280..... ....290.........300..
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Query Sequence  LVLHSNLLTSV. PTGLVHLPLITRLDLRDNRLRDLPA. . . . ELLDAPFVRLQGNPLGE
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Template Conservation 
 

 
            
  
  
 

 
 
  
       
  
  
 

 
 
 
Template Sequence  LTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC
Template Known Secondary structure 
TTS



TTTTTT
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SS

S


TTTTTT
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SS
B

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   321........330.........340.........350.........360.........370........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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