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Job DescriptionQ9ERV7
Confidence99.57%DateWed Jul 10 14:21:35 BST 2013
Rank95Aligned Residues191
% Identity24%Templatec1otnA_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:internalin b; PDBTitle: calcium-binding mutant of the internalin b lrr domain
Resolution1.97 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   64.....70.........80.........90.........100.........110.........120...
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Query Sequence  PQLLQVEFLRLSTHEDPQLLDDTLAKVPWSLLRLRSLVLKGGQSRGALGACLHGTLTTLP
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Template Sequence  AAFAETIKDNLKKKSVTDAVT. . . . . . QNELNSIDQIIANNSDIKSV. . . . . . . . . . . . .
Template Known Secondary structure  TT
S
TTS
......T


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   51........60.........70. ........80.........90.
 
   124.....130.........140.........150.........160.........170.........180...
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Query Sequence  AGLSDLACLAHLDLSFNRLETLPTCVPELHGLDALLLSHNHLSELPEALGALPALTFLTV
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Template Sequence  QGIQYLPNVTKLFLNGNKLTDIKP. LTNLKNLGWLFLDENKIKDL. SSLKDLKKLKSLSL
Template Known Secondary structure  TTGGG
TT



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GG.GTT
TT



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G.GGGTT
TT


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   92.......100.........110..... ....120.........130..... ....140.........
 
   184.....190.........200.........210.........220.........230.........240...
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Query Sequence  THNRLERLPLTLGSLSTLQRLDLSENLLDTIPSEIGNLRSLSELNLASNRLQSLPASLAG
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Template Sequence  EHNGISDI. NGLVHLPQLESLYLGNNKITDI. TVLSRLTKLDTLSLEDNQISDI. VPLAG
Template Known Secondary structure 
SS




.GGGGG
TT



SS




.GGGGG
TT
S

SS




.GGGTT
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   150....... ..160.........170......... 180.........190.........200. .....
 
   244.....250.........260.........270.........
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Query Sequence  LRSLRLLVLHSNLLTSVPTGLVHLPLITRLDLRDNR
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Template Sequence  LTKLQNLYLSKNHISDLR. ALAGLKNLDVLELFSQE
Template Known Secondary structure 
TT



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G.GGTT






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   207..210.........220.... .....230.........240.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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