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Job DescriptionQ9ERV7
Confidence99.27%DateWed Jul 10 14:21:35 BST 2013
Rank115Aligned Residues255
% Identity15%Templatec2p1nE_
PDB info PDB header:signaling proteinChain: E: PDB Molecule:transport inhibitor response 1 protein; PDBTitle: mechanism of auxin perception by the tir1 ubiqutin ligase
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   60.........70.........80. ........90........
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Query Sequence  SQQPPQLLQVEFLRLSTHEDPQ. . . . . . . . . . . . . . . . . . . . . LLDDTLAKVPWSLLRLR
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Template Sequence  PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLR
Template Known Secondary structure  GGGSGGGGS
S
TT



TT
TT

TTS

TT

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   282.......290.........300.........310.........320.........330.........340.
 
   99100.........110.........120.........130.........140... ......150......
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Query Sequence  SLVLKGGQSRGALGACLHGTLTTLPAGLSDLACLAHLDLSFNRLE. . TLPTCVPELHGLD
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Template Sequence  ELRVFPSEPFVMEPNVALTEQGLV. SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMT
Template Known Secondary structure 
S
TT
SS
SS


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TT

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   342.......350.........360..... ....370.........380.........390.........400
 
   157..160....... ..170.........180.........190....... ..200...
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Query Sequence  ALLLSHNHLSE. . . . . . . . . . . . LPEALGALPALTFLTVTHNRLERLPLTLGS. LSTLQR
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Template Conservation   
 
                             
  
 
           
      
  
Template Sequence  RFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEM
Template Known Secondary structure  SSTT


TTT


T
TT



SS


TT

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   401........410.........420.........430.........440.........450.........460
 
   204.....210.. .......220.........230..... ....240.........250........
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Query Sequence  LDLSENLLD. . TIPSEIGNLRSLSELNLASNRLQ. . SLPASLAGLRSLRLLVLHSNLLT.
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Template Sequence  LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF
Template Known Secondary structure  S

SS
TT

S
S
BTSGGGGGSSSSB
B
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   461........470.........480.........490.........500.........510.........520
 
   259260...... ...270.........280.........290.........300.........310.....
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Query Sequence  SVPTGLVH. LPLITRLDLRDNRLRDLPAELLDAPFVRLQGNPLGEASPAPPSPPDISQ
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Template Conservation       
                                           
        
Template Sequence  GACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMDQ
Template Known Secondary structure 
TT
TTS
GGGS
TTSB
S
SS
S
S


TTTT
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   521........530.........540.........550.........560.........570........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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