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Job DescriptionQ9ERV7
Confidence97.92%DateWed Jul 10 14:21:35 BST 2013
Rank134Aligned Residues201
% Identity21%Templatec1fqvK_
PDB info PDB header:ligaseChain: K: PDB Molecule:skp2; PDBTitle: insights into scf ubiquitin ligases from the structure of2 the skp1-skp2 complex
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   67..70.........80.........90.........100.........110.........120......
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Query Sequence  LQVEFLRLSTHEDPQLLDDTLAKVPWSLLRLRSLVLKGGQSRGALGACLHGTLTTLPAGL
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Template Sequence  FRVQHMDLSNSVIEV. . . STLHGILSQCSKLQNLSLEGLRLSDPIV. . . . . . . . . . . NTL
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S
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   193......200....... ..210.........220.........230..... ...
 
   127..130.........140... ......150.........160.........170. ........
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Query Sequence  SDLACLAHLDLSFNRLE. . . TLPTCVPELHGLDALLLSHNHLSELPEA. . . . LGALPALT
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Template Sequence  AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT
Template Known Secondary structure  TT
TT
S
TT
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TT





TT

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TT

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   239240.........250.........260.........270.........280.........290........
 
   180.........190 .........200.........210.. .......220.........230. .
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Query Sequence  FLTVTHNRLER. . . . LPLTLGSLSTLQRLDLSENLLD. . TIPSEIGNLRSLSELNLAS. N
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Template Sequence  QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY
Template Known Secondary structure 
TT
TTT


TT
S
TT
TT

GGGTT
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TT
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   299300.........310.........320.........330.........340.........350........
 
   233... ...240.........250........ .260.........270.........280.....
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Query Sequence  RLQS. LPASLAGLRSLRLLVLHSNLLT. . SVPTGLVHLPLITRLDLRDNRLRDLPA
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Template Sequence  DIIPETLLELGEIPTLKTLQVFGI. VPDGTLQLLKEALPHLQ. . . INCSHFTTIAR
Template Known Secondary structure  TS
GGGGGGGGS
SS


TTS.S

TTS
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TT
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   359360.........370.........380.. .......390......... 400.........410
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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