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Job DescriptionQ9ERV7
Confidence99.95%DateWed Jul 10 14:21:35 BST 2013
Rank8Aligned Residues233
% Identity23%Templatec3ojaA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex
Resolution2.70 Å
Model Dimensions (Å)X:51.175 Y:64.459 Z:37.297

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.........70.........80.........90.........100...
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Query Sequence  NLDLRPGGCHRLQYLCSQQPPQLLQVEFLRLSTHEDPQLLDDTLAKVPWSLLRLRSLVLK
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Template Sequence  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADL. . . . APFTKLELLNLS
Template Known Secondary structure  S

TTTTTSTTGGG



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GGGG....TT
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   33......40.........50.........60.........70...... ...80........
 
   104.....110.........120.........130.........140.........150.........160...
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Query Sequence  GGQSRGALGACLHGTLTTLPAGLSDLACLAHLDLSFNRLETLPTCVPELHGLDALLLSHN
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Template Sequence  SNVLYETLD. . . . . . . . . . . . . LESLSTLRTLDLNNNYVQELL. . . . VGPSIETLHAANN
Template Known Secondary structure  TS

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TT
TT



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   8990....... ..100.........110........ .120.........130.
 
   164.....170.........180.........190.... .....200.........210....... ..220
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Query Sequence  HLSELPEALGALPALTFLTVTHNRLERLPLT. LGSLSTLQRLDLSENLLDTIPSE. . IGN
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Template Sequence  NISRVS. . CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS
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SS


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SGGGB
GGGGSS
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   132..... ..140.........150.........160.........170.........180.........
 
   221........230.........240.........250.........260.........270.........280
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Query Sequence  LRSLSELNLASNRLQSLPASLAGLRSLRLLVLHSNLLTSVPTGLVHLPLITRLDLRDNRL
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Template Sequence  SDTLEHLNLQYNFIYDVKG. QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKL
Template Known Secondary structure  TTT


TTS



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TT



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GGGGGGTT
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   190.........200........ .210.........220.........230.........240........
 
   281...... ..290.........300
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Query Sequence  RDLPAEL. . . LDAPFVRLQGNPL
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Template Sequence  VLIEKALRFSQNLEHFDLRGNGF
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TT



TT


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B
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   249250.........260.........270.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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