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Job DescriptionQ9ERV7
Confidence99.79%DateWed Jul 10 14:21:35 BST 2013
Rank67Aligned Residues173
% Identity40%Templatec1g9uA_
PDB info PDB header:toxinChain: A: PDB Molecule:outer protein yopm; PDBTitle: crystal structure of yopm-leucine rich effector protein from yersinia2 pestis
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   96...100.........110.........120.........130.........140.........150.....
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Query Sequence  RLRSLVLKGGQSRGALGACLHGTLTTLPAGLSDLACLAHLDLSFNRLETLPTCVPELHGL
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Template Sequence  QAHELELNNLG. . . . . . . . . . . . LSSLPEL. . . PPHLESLVASCNSLTELP. . . ELPQSL
Template Known Secondary structure  T
S
TTS
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S




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TT



SS

SS

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TT
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   72.......80.. ....... 90.........100....... ..110...
 
   156...160.........170.........180.........190.........200.......
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Query Sequence  DALLLSHNHLSELPEALGALPALTFLTVTHNRLERLPLTLGSLSTLQRLDLS. . . . . . . .
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Template Sequence  KSLLVDNNNLKALSD. . . LPPLLEYLGVSNNQLEKL. PELQNSSFLKIIDVDNNSLKKLP
Template Known Secondary structure 


SS

SB


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TT



SS

SB
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GGG
TT



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S


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   114.....120........ .130.........140...... ...150.........160.........
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEE
Template Known Secondary structure 


TT



SS

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TT
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SS

S





TT



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S
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   170.........180.........190.........200.........210.........220.........
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF
Template Known Secondary structure 



TT
TT



SS

SS




TT



SS

S





TT



SS

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   230.........240.........250.........260.........270.........280.........
 
   208.210.........220.........230.........240.........250....
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Query Sequence  . . . . . . . . . . . . . ENLLDTIPSEIGNLRSLSELNLASNRLQSLPASLAGLRSLRLLVLHS
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Template Sequence  SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL. . . PPRLERLIASF
Template Known Secondary structure  S





TT



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TT



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SS



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S
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   290.........300.........310.........320.........330..... ....340......
 
   255....260.........270.........280.........290......
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Query Sequence  NLLTSVPTGLVHLPLITRLDLRDNRLRDLPAELLDAPFVRLQ
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Template Sequence  NHLAEVP. . . ELPQNLKQLHVEYNPLREFPDIPESVEDLRMN
Template Known Secondary structure  S

S


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TT



SS

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TT



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   347..350... ......360.........370.........380.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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