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Job DescriptionQ9ERV7
Confidence99.44%DateWed Jul 10 14:21:35 BST 2013
Rank107Aligned Residues249
% Identity19%Templatec1k5dL_
PDB info PDB header:signaling protein/signaling activatorChain: L: PDB Molecule:ran gtpase activating protein 1; PDBTitle: crystal structure of ran-gppnhp-ranbp1-rangap complex
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   43......50.........60.........70.........80.........90.........100..
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Query Sequence  LNLDLRPGGCHRLQYLCSQQPPQLLQVEFLRLSTHEDPQLLDDTLAKVPWSLLRLRSLVL
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Template Sequence  KSLKLDAITTEDEKSV. FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF
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SGG.G
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   910.........20.... .....30.........40.........50.........60.......
 
   103......110.........120.........130.........140...... ...150.......
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Query Sequence  KGGQSRGALGACLHGTLTTLPAGLSDLACLAHLDLSFNRLETLP. . . . . TCVPELHGLDA
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Template Sequence  SDIFTGRVKDE. IPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH
Template Known Secondary structure 
S

TT

TTT.TT
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   68.70........ .80.........90.........100.........110.........120......
 
   158.160...... ...170.........180.........190.... ....
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Query Sequence  LLLSHNHLS. . . . . . . . . . . . . . ELPEALGALPALTFLTVTHNRLERLPLT. . . . . LGSL
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Template Sequence  LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH
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S



TTT






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   127..130.........140.........150.........160.........170.........180......
 
   199200.........210..... ....220....
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Query Sequence  STLQRLDLSENLLDTIP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SEIGNLRSL
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Template Conservation                                                              
Template Sequence  RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL
Template Known Secondary structure  TT



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TGGG
TT


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   187..190.........200.........210.........220.........230.........240......
 
   225....230..... ....240.........250......... 260.... .....270.
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Query Sequence  SELNLASNRLQ. . . . . . . SLPASLAGLRSLRLLVLHSNLLTS. . . . . VPTGL. VHLPLIT
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Template Conservation                               
  
 

 
 
       
   
   
  
 
Template Sequence  RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL
Template Known Secondary structure 

TT




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SS

B
TT

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   247..250.........260.........270.........280.........290.........300......
 
   272.......280.........290...
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Query Sequence  RLDLRDNRLRDLPAELLDAPFV
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Template Sequence  FLELNGNRFSEEDDVVDEIREV
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TTSBS
TTS
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   307..310.........320........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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