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Job DescriptionQ9ERV7
Confidence99.80%DateWed Jul 10 14:21:35 BST 2013
Rank59Aligned Residues198
% Identity28%Templatec2o6sA_
PDB info PDB header:immune systemChain: A: PDB Molecule:variable lymphocyte receptor b; PDBTitle: structural diversity of the hagfish variable lymphocyte2 receptors b59
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   103......110.........120.........130.........140..... ....150.........160.
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Query Sequence  KGGQSRGALGACLHGTLTTLPAGLSDLACLAHLDLSFNRLETL. PTCVPELHGLDALLLS
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Template Sequence  SRCSCSGTTVECYSQGRTSVPTGIP. . AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG
Template Known Secondary structure  TT
TT

SS

SS

S


..TT
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TTTTTT
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   26...30.........40.........50 .........60.........70.........80...
 
   162.......170. ........180.........190.... .....200.........210.... ....
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Query Sequence  HNHLSELPEA. LGALPALTFLTVTHNRLERLPLT. LGSLSTLQRLDLSENLLDTI. PSEI
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Template Sequence  GNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVF
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   84.....90.........100.........110.........120.........130.........140...
 
   219220.........230.........240 .........250.........260.........270 .....
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Query Sequence  GNLRSLSELNLASNRLQSLPAS. LAGLRSLRLLVLHSNLLTSVPTGLVHLPLI. . TRLDL
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Template Sequence  DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGV
Template Known Secondary structure  TT
TT



SS

S


TTTTTT
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B


TTTT
TTT
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   144.....150.........160.........170.........180.........190.........200...
 
   276...280.........290.........300.....
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Query Sequence  RDNRLRDLPAELLDAPFVRLQGNPLGEASP
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Template Sequence  VRNSAGSVAPDSAKCS. . . GSGKPVRSIIC
Template Known Secondary structure  BB
TTSSB
TT
SBBT...TT

BGGG


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   204.....210......... 220.........230
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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