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Job DescriptionQ9ERV7
Confidence99.92%DateWed Jul 10 14:21:35 BST 2013
Rank16Aligned Residues221
% Identity35%Templatec3g06A_
PDB info PDB header:ligaseChain: A: PDB Molecule:ssph2 (leucine-rich repeat protein); PDBTitle: the salmonella virulence effector ssph2 functions as a2 novel e3 ligase
Resolution1.90 Å
Model Dimensions (Å)X:80.215 Y:37.463 Z:37.642

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   41........50.........60.........70.........80.........90.........100
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Query Sequence  NQLNLDLRPGGCHRLQYLCSQQPPQLLQVEFLRLSTHEDPQLLDDTLAKVPWSLLRLRSL
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Template Sequence  GNAVLNVGESGLTTLPDCLPA. . . . . . HITTLVIPDNNLTSLPA. . . . . . . . LPPELRTL
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   202.......210.........220.. .......230......... 240.......
 
   101........110.........120.........130.........140.........150.........160
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Query Sequence  VLKGGQSRGALGACLHGTLTTLPAGLSDLACLAHLDLSFNRLETLPTCVPELHGLDALLL
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Template Sequence  EVSGNQ. . . . . . . . . . . . LTSLP. . . VLPPGLLELSIFSNPLTHLP. . . ALPSGLCKLWI
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   248.250... ..... .260.........270........ .280.........
 
   161........170.........180.........190.........200 ...
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Query Sequence  SHNHLSELPEALGALPALTFLTVTHNRLERLPLTLGSLST. . . . . . . . . . . . . . . . . LQR
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Template Sequence  FGNQLTSLPV. . . LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQE
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   290......... 300.........310.........320.........330.........340......
 
   204.....210.........220... ......230.........240......
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Query Sequence  LDLSENLLDTIPSEIGNLRS. . . . . . . . . . . . . . . . . LSELNLASNRLQSLPASLAGLRS
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Template Sequence  LSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP. . . VLPSE
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   347..350.........360.........370.........380.........390........ .400...
 
   247..250.........260.........270.........280..... ....290.........300..
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Query Sequence  LRLLVLHSNLLTSVPTGLVHLPLITRLDLRDNRLRDLPA. . . ELLDAPFVRLQGNPLGE
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Template Sequence  LKELMVSGNRLTSLPM. . . LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE
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   404.....410......... 420.........430.........440.........450.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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