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Job DescriptionQ9ERV7
Confidence99.91%DateWed Jul 10 14:21:35 BST 2013
Rank29Aligned Residues223
% Identity29%Templatec2id5D_
PDB info PDB header:ligand binding protein,membrane proteinChain: D: PDB Molecule:leucine rich repeat neuronal 6a; PDBTitle: crystal structure of the lingo-1 ectodomain
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   63...... 70.........80.........90.........100.........110.......
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Query Sequence  PPQLLQV. . . . . EFLRLSTHEDPQLLDDTLAKVPWSLLRLRSLVLKGGQSRGALGACLHG
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Template Sequence  RKRFVAVPEGIPRLLDLGKNRIKTLNQDEF. . . . ASFPHLEELELNENIVSAVEP. . . . .
Template Known Secondary structure  SS

SS

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S




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TT




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   20.........30.........40......... 50.........60.........70
 
   118.120.........130.........140....... ..150.........160.........170. ....
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Query Sequence  TLTTLPAGLSDLACLAHLDLSFNRLETLPT. CVPELHGLDALLLSHNHLSELPEA. LGAL
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Template Sequence  . . . . . . GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL
Template Known Secondary structure  ......S
STT
TT


TTS

S


TTTTTT
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   74.....80.........90.........100.........110.........120.......
 
   176...180.........190.... .....200.........210........
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Query Sequence  PALTFLTVTHNRLERLPLT. LGSLSTLQRLDLSENLLDTIPSEI. . . . . . . . . . . . . . . .
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Template Sequence  YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN
Template Known Secondary structure  TT



TT


TTTTTT
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SS

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   128.130.........140.........150.........160.........170.........180.......
 
   219220.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GNL
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Template Sequence  INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL
Template Known Secondary structure 


TT
S
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TT



TT


TTTTTT


SSS

SS

TTTTTT
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   188.190.........200.........210.........220.........230.........240.......
 
   222.......230....... ..240.........250.........260 .........270.........
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Query Sequence  RSLSELNLASNRLQSL. PASLAGLRSLRLLVLHSNLLTSV. PTGLVHLPLITRLDLRDNR
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Template Sequence  VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ
Template Known Secondary structure  TT



SS



TTSSTT
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SS

S
TTTTTT
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   248.250.........260.........270.........280.........290.........300.......
 
   280..... ....290.........300
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Query Sequence  LRDLPA. . . . ELLDAPFVRLQGNPL
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Template Sequence  LTTLEESVFHSVGNLETLILDSNPL
Template Known Secondary structure 
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GGG
S
GGG



SS
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   308.310.........320.........330..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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