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Job DescriptionQ9ERV7
Confidence99.92%DateWed Jul 10 14:21:35 BST 2013
Rank22Aligned Residues191
% Identity43%Templatec2z7xB_
PDB info PDB header:immune systemChain: B: PDB Molecule:toll-like receptor 1, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   108.110.........120.........130.........140..... ....150.........160......
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Query Sequence  RGALGACLHGTLTTLPAGLSDLACLAHLDLSFNRLETL. PTCVPELHGLDALLLSHNHLS
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Template Sequence  SEFLVDRSKNGLIHVPKDL. . SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ
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TTS

SS


S
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TT
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TT
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   25....30.........40... ......50.........60.........70.........80..
 
   167. .170.........180.........190.........200.........210..... ....220...
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Query Sequence  EL. PEALGALPALTFLTVTHNRLERLPLTLGSLSTLQRLDLSENLLDTIP. . SEIGNLRS
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Template Sequence  YLDISVFKFNQELEYLDLSHNKLVKIS. . CHPTVNLKHLDLSFNAFDALPICKEFGNMSQ
Template Known Secondary structure  GGGGTT
TT



SS


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S

SS

SS



GGGGG
TT
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   83......90.........100......... 110.........120.........130.........140
 
   224.....230.........240
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Query Sequence  LSELNLASNRLQSLPAS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK
Template Known Secondary structure 

SS

GGGGGGGTTS

TTTTSS

TTTTTT



SSS
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   141........150.........160.........170.........180.........190.........200
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS
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TT
S



STTTTGGGG
TT

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   201........210.........220.........230.........240.........250.........260
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                           
                  
Template Sequence  FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY
Template Known Secondary structure  TSS
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S







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T
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   261........270.........280.........290.........300.........310.........320
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
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Template Sequence  EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ
Template Known Secondary structure  T


SSS







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SS


TTTTTT



SS



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   321........330.........340.........350.........360.........370.........380
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                     
  
                     
  
            
Template Sequence  MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF
Template Known Secondary structure  SS


BTT
TT



SS

B

GGG
S



TT



SS


GGGG
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   381........390.........400.........410.........420.........430.........440
 
   241........250.........260.........270.........280..... ....290......
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Query Sequence  LAGLRSLRLLVLHSNLLTSVPTGLVHLPLITRLDLRDNRLRDLPA. . . . ELLDAPFVRLQ
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Template Sequence  RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH
Template Known Secondary structure  GS

TT



SS





GGGGG
TT



SS





TTTTTT
TT



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   441........450.........460.........470.........480.........490.........500
 
   297..300..
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Query Sequence  GNPLGE
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Template Conservation   
   
Template Sequence  TNPWDC
Template Known Secondary structure  SS
B

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   501.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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