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Job DescriptionQ9ERV7
Confidence99.93%DateWed Jul 10 14:21:35 BST 2013
Rank14Aligned Residues190
% Identity45%Templatec3a79B_
PDB info PDB header:immune systemChain: B: PDB Molecule:toll-like receptor 6, variable lymphocyte receptor b; PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex
Resolution2.90 Å
Model Dimensions (Å)X:82.897 Y:40.862 Z:72.186

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   109110.........120.........130.........140..... ....150.........160.......
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Query Sequence  GALGACLHGTLTTLPAGLSDLACLAHLDLSFNRLETL. PTCVPELHGLDALLLSHNHLSE
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Template Sequence  ESMVDYSNRNLTHVPKDL. . PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS
Template Known Secondary structure 


TTS


S

TTS..
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GGGTTT
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   33......40.........50 .........60.........70.........80.........90
 
   168 .170.........180.........190.........200.........210..... ....220....
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Query Sequence  L. PEALGALPALTFLTVTHNRLERLPLTLGSLSTLQRLDLSENLLDTIP. . SEIGNLRSL
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Template Sequence  LDFHVFLFNQDLEYLDVSHNRLQNIS. . CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKL
Template Known Secondary structure 
TTTTTT
TT


TTS



..S


TT
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SB



GGGGG
TT
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   91........100.........110...... ...120.........130.........140........
 
   225....230.........240
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Query Sequence  SELNLASNRLQSLPAS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL
Template Known Secondary structure 

SB

TTTTGGGTTS
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SSS
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   149150.........160.........170.........180.........190.........200........
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                              
Template Sequence  FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK
Template Known Secondary structure 




SS

STTS
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   209210.........220.........230.........240.........250.........260........
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF
Template Known Secondary structure  TTSS
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S
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   269270.........280.........290.........300.........310.........320........
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG
Template Known Secondary structure  T


SSS







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SS


TTTTTT

S
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SS
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   329330.........340.........350.........360.........370.........380........
 
   241..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LAG
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Template Conservation                  
  
                     
  
               
Template Sequence  LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL
Template Known Secondary structure 

BTTTTTT
TT


TTS

BS

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TT



SS


GGGGSS
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   389390.........400.........410.........420.........430.........440........
 
   244.....250.........260.........270.........280..... ....290.........
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Query Sequence  LRSLRLLVLHSNLLTSVPTGLVHLPLITRLDLRDNRLRDLPA. . . . ELLDAPFVRLQGNP
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Template Sequence  PPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP
Template Known Secondary structure 
TT
S

SS





TTTTSS


S

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TTSTTT
TT




S

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   449450.........460.........470.........480.........490.........500........
 
   300..
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Query Sequence  LGE
Query Conservation 
  
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Template Conservation    
Template Sequence  WDC
Template Known Secondary structure  B

Template Predicted Secondary structure 


Template SS confidence 


   509510.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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