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Job DescriptionQ9ERV7
Confidence98.83%DateWed Jul 10 14:21:35 BST 2013
Rank122Aligned Residues119
% Identity24%Templatec3rw6A_
PDB info PDB header:transport protein/rnaChain: A: PDB Molecule:nuclear rna export factor 1; PDBTitle: structure of nuclear rna export factor tap bound to cte rna
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   152.......160.........170.........180.........190....... ..200.........210
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Query Sequence  LHGLDALLLSHNHLSELPEALGALPALTFLTVTHNRLERLPLTLGS. LSTLQRLDLSENL
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Template Sequence  DGSQQALDLKGLRSDPDLVAQNIDVVLN. . . . RRSCMAATLRIIEENIPELLSLNLSNNR
Template Known Secondary structure  TTTT
TTGGG
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TT....S
TT


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   221........230.........240........ .250.........260.........270......
 
   211.... ....220.........230......... 240.........250........ .260...
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Query Sequence  LDTIP. . . SEIGNLRSLSELNLASNRLQSLPA. SLAGLRSLRLLVLHSNLLT. SVPTG. .
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Template Sequence  LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQST
Template Known Secondary structure 



GGGTTSTT


TTS


SGGGGGGGTTS

S
TTSTTGGG
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   277..280.........290.........300.........310.........320.........330......
 
   264.....270....
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Query Sequence  . . . . . LVHLPLITRLD
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Template Sequence  YISAIRERFPKLLRLD
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   337..340.........350..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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