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Job DescriptionQ9ERV7
Confidence100.00%DateWed Jul 10 14:21:35 BST 2013
Rank3Aligned Residues363
% Identity16%Templatec3g5bA_
PDB info PDB header:apoptosisChain: A: PDB Molecule:netrin receptor unc5b; PDBTitle: the structure of unc5b cytoplasmic domain
Resolution2.00 Å
Model Dimensions (Å)X:89.527 Y:47.141 Z:45.683

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   463......470.........480.........490.........500.........510.........520..
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Query Sequence  TCLLPPEGALLCSSGHPGVRVTFPPGVTEEPRQVSMQVVHMAGLELRTLLEESEASVSPL
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Template Sequence  SGTFGCLGGRLTIPGT. GVSLLVPNGAIPQGKFYDLYLRINKTESTLPLSEGSQTVLSPS
Template Known Secondary structure 
TT
TTT.T
TTSS
TT



GGGGGGG
STT
S

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   546...550.........560. ........570.........580.........590.........600....
 
   523......530.........540.........550.........560.........570... .
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Query Sequence  LCLSQSGPPSFLQPVTVQLPLPPGVTGFSLDRSHLHLLYRTPLTTTWDDIT. . . . . . . . T
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Template Sequence  VTC. GPTGLLLCRPVVLTVPHCAEVIAGDWIF. . . . QLKTQAHQGHWEEVVTLDEETLNT
Template Known Secondary structure  .
SS


SS


B

SSS

....SSTT
TT


TT
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   605.. ..610.........620.........630..... ....640.........650.........
 
   575....580.........590........ .600.........610.........620.........630...
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Query Sequence  QVALEFTHLYARFQVTHFSWYWLW. YTTKTCVGGLARKAWERLRLHRVNLIALQRRRDPE
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Template Sequence  PCYCQLEAKSCHILLDQLGTYVFTGESYSRSAVK. . . . . . . . . . . . RLQLAIFAPALCTS
Template Known Secondary structure  S
SSSS



TT
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S
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   660.........670.........680.........690... ......700.......
 
   634.....640.........650.........660.........670.........680.........690
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Query Sequence  . . . QVLLQCLPRNKVDATLSRLLVRYRGPEPSETVEMFEGEKFFAAFERGIDVDADRPDC
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Template Sequence  LEYSLRVYCLEDTP. . AALKE. VLELERTLGGYLVEEPKPLLFKDSYHNLRLSLHDIPH.
Template Known Secondary structure  SSS...T
S

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T.
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   708.710.........720. ..... ...730.........740.........750.........760...
 
   691........700.........710.........720.........730.........740.........750
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Query Sequence  VDGRICFVFYSHLKNVKEVYITTALDREAQDVRGQVSFYRGSLPVEVPAEAEAARQRKGT
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Template Sequence  . . . AHWRSKLLAKYQEIPFY. . . HVWNGSQKAL. HCTFTL. . . . . . . . . . . . . . ERHSLA
Template Known Secondary structure  ...TT

SSS

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TT
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   764.....770.........780 .........790 ...... ...800..
 
   751........760.........770 .........780.........790.........800.........
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Query Sequence  DALWMATLPIKLPRLRGAQG. SGQGTDFSLMPLNLGDAETGFLTQSNLLSVASRLGPDWP
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Template Sequence  STEFTCKVCVRQVEGEGQIFQLHTTLTTQLGPYAFKIPLSIRQKICNSLDAPNSRGNDWR
Template Known Secondary structure 

TTS


TTTT
SS
SS

TTSTT
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   803......810.........820.........830.........840.........850.........860..
 
   810.........820.........830.........840.........850.........860.........
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Query Sequence  AVALHLGMPYHKLQRIRHEFRDDLDGQVRHMLFSWAERQTGQPGAVGHLVQALEQSDRRD
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Template Sequence  LLAQKLSMDRYLNYFATKASP. . . . . . TGVILDLWEARQ. QDDGDLNSLASALEEMGKSE
Template Known Secondary structure  TT

TTTTSS
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TT

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   882.......890.........900.. .......910.... .....920.........930....
 
   870.....
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Query Sequence  VAEEVR
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Template Conservation      

Template Sequence  MLVAMT
Template Known Secondary structure 
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   935....940
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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