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Job DescriptionQ9ERV7
Confidence99.50%DateWed Jul 10 14:21:35 BST 2013
Rank102Aligned Residues166
% Identity19%Templatec3g04C_
PDB info PDB header:immune systemChain: C: PDB Molecule:thyrotropin receptor; PDBTitle: crystal structure of the tsh receptor in complex with a thyroid-2 stimulating autoantibody
Resolution2.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   129130.........140.........150.........160.........170. ........180.......
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Query Sequence  LACLAHLDLSFNRLETLPTCVPELHGLDALLLSHNHLSELPEA. LGALPALTFLTVTHNR
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Template Sequence  CHQEEDFRVTCKDIQRIP. . . SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV
Template Known Secondary structure  TTT
S
SS

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TT
SS


S
TTTTTT
TT



S
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   31........40........ .50.........60.........70.........80.......
 
   188.190. ........200.........210........
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Query Sequence  LERL. . PLTLGSLSTLQRLDLSENLLDTIPSEI. . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV
Template Known Secondary structure  S


TTTS
TT

TT


TTS

TT



SS



TT
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   88.90.........100.........110.........120.........130.........140.......
 
   219220.........230.........240.........250 .
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . GNLRSLSELNLASNRLQSLPASLAGLRSLRLL. V
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Template Sequence  YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYL
Template Known Secondary structure 
B

SS
TT


TTTTTTTBSS

S


S
TTTTTT
B
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   148.150.........160.........170.........180.........190.........200.......
 
   252.......260... .... ..270.........280...... ...290.......
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Query Sequence  LHSNLLTSVPTG. LVHL. PLITRLDLRDNRLRDLPAE. LLDAPFVRLQG
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Template Sequence  NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN
Template Known Secondary structure  TT
TT


TTTTTT
SB

S
TTS





STT
SS
S


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   208.210.........220.........230.........240.........250......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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