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Job DescriptionQ9ERV7
Confidence99.92%DateWed Jul 10 14:21:35 BST 2013
Rank19Aligned Residues232
% Identity31%Templatec3a79A_
PDB info PDB header:immune systemChain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of tlr2-tlr6-pam2csk4 complex
Resolution2.90 Å
Model Dimensions (Å)X:76.788 Y:79.470 Z:44.994

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.........70.........80.........90.........100...
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Query Sequence  NLDLRPGGCHRLQYLCSQQPPQLLQVEFLRLSTHEDPQLLDDTLAKVPWSLLRLRSLVLK
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Template Conservation    
 
   
  

  
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Template Sequence  VCDGRSRSFTSIPSGL. . . . . . TAAMKSLDLSFNKITYIGHGDL. . . . RACANLQVLILK
Template Known Secondary structure 

SS

SSS
S

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TT
S

SS



SSTT....SS
TT
S
T
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   35....40.........50 .........60.........70.. .......80....
 
   104.....110.........120.........130.........140........ .150.........160..
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Query Sequence  GGQSRGALGACLHGTLTTLPAGLSDLACLAHLDLSFNRLETLPTC. VPELHGLDALLLSH
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Template Conservation   
 
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Template Sequence  SSRINT. . . . . . . . . . . IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG
Template Known Secondary structure  TS


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TTTTTT
TT



SS


S

TTSSTT
TT


TT
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   85....90 .........100.........110.........120.........130...
 
   163......170. ........180
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Query Sequence  NHLSELPEA. . LGALPALTF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation 
                
  
 
                   
                 
Template Sequence  NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS
Template Known Secondary structure 


SSS
SS
SSTT
TT

SSS


SSTTTT

TT


TTT
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   134.....140.........150.........160.........170.........180.........190...
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                          
                   
Template Sequence  LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK
Template Known Secondary structure  TTS


SBGGGTTTTBSS
B
TT





S








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   194.....200.........210.........220.........230.........240.........250...
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT
Template Known Secondary structure  SS
GGGGGT
TT


S
S
S




TTTT

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   254.....260.........270.........280.........290.........300.........310...
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                          
  
                    
  
        
Template Sequence  IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV
Template Known Secondary structure  S
B
TTGGG



GGGTTTTSS

SS






TT


TTS


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   314.....320.........330.........340.........350.........360.........370...
 
   181........190......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LTVTHNRLERLPLTLG
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Template Conservation                 
  
                      
                  
Template Sequence  EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ
Template Known Secondary structure  T
TTS
TT


TTS



GGG
TT



S






S


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   374.....380.........390.........400.........410.........420.........430...
 
   197..200.........210.........220.........230.........240.........250......
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Query Sequence  SLSTLQRLDLSENLLDTIPSEIGNLRSLSELNLASNRLQSLPASLAGLRSLRLLVLHSNL
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Template Conservation      
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Template Sequence  WPEKMRFLNLSSTGIRVV. . KTCIPQTLEVLDVSNNNLDSFSL. . . FLPRLQELYISRNK
Template Known Secondary structure 

TT


TT





..
TTS
TT
S

SS

S



...

TT



SS
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   434.....440.........450. ........460.........470.... .....480........
 
   257..260.........270.........280..... ....290.........300..
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Query Sequence  LTSVPTGLVHLPLITRLDLRDNRLRDLPA. . . . ELLDAPFVRLQGNPLGE
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Template Conservation 
  
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Template Sequence  LKTLP. DASLFPVLLVMKIASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC
Template Known Secondary structure 
SS

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TTS
TT



SS

S


SS
TTS
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S




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   489490... ......500.........510.........520.........530.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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