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Job DescriptionQ9ERV7
Confidence99.91%DateWed Jul 10 14:21:35 BST 2013
Rank24Aligned Residues180
% Identity26%Templatec2a0zA_
PDB info PDB header:immune systemChain: A: PDB Molecule:toll-like receptor 3; PDBTitle: the molecular structure of toll-like receptor 3 ligand binding domain
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   104.....110.........120.........130.........140...... ...150.........160..
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Query Sequence  GGQSRGALGACLHGTLTTLPAGLSDLACLAHLDLSFNRLETLP. TCVPELHGLDALLLSH
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Template Sequence  KCTVSHEVADCSHLKLTQVPDDL. . PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF
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TT

SS

SS

SSS..
TT
S

SS





GGGGTT
TT
S

S
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   27..30.........40......... 50.........60.........70.........80....
 
   163..... .170.........180.........190.... .....200.........210.... .....
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Query Sequence  NHLSEL. PEALGALPALTFLTVTHNRLERLPLT. LGSLSTLQRLDLSENLLDTI. PSEIG
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Template Sequence  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV
Template Known Secondary structure  S





TT
TT



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TTTTTT
TT
S
TTS





S
TTT
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   85....90.........100.........110.........120.........130.........140....
 
   220.........230....... ..240.........250.........260... ......270.....
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Query Sequence  NLRSLSELNLASNRLQSL. PASLAGLRSLRLLVLHSNLLTSVPTG. . . LVHLPLITRLDL
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Template Sequence  KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL
Template Known Secondary structure  T
TT



SS







SSS

TT



SS



B
GGGTGGGTT
S
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   145....150.........160.........170.........180.........190.........200....
 
   276...280.....
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Query Sequence  RDNRLRDLPA
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Template Sequence  SSNQIKEFSP
Template Known Secondary structure 
S




B
T
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   205....210....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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