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Job DescriptionQ9ERV7
Confidence99.79%DateWed Jul 10 14:21:35 BST 2013
Rank64Aligned Residues192
% Identity26%Templatec3bz5A_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:internalin-j; PDBTitle: functional domain of inlj from listeria monocytogenes2 includes a cysteine ladder
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   117..120.........130.........140.........150.........160.........170......
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Query Sequence  GTLTTLPAGLSDLACLAHLDLSFNRLETLPTCVPELHGLDALLLSHNHLSELPEALGALP
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Template Sequence  EMQATDTISEEQLATLTSLDCHNSSITDMTG. IEKLTGLTKLICTSNNITTLD. . LSQNT
Template Known Secondary structure  T

TTSTT



SS




TT.GGG
TT
S

SS

S


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TT
T
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   80.........90.........100.........110 .........120.........130. .....
 
   177..180.........190.........200.........210.........220.........230......
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Query Sequence  ALTFLTVTHNRLERLPLTLGSLSTLQRLDLSENLLDTIPSEIGNLRSLSELNLASNRLQS
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Template Sequence  NLTYLACDSNKLTNLD. . VTPLTKLTYLNCDTNKLTKLD. . VSQNPLLTYLNCARNTLTE
Template Known Secondary structure  T
S

SS

S


..
TT
TT



SS

S


..
TT
TT


TTS

S
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   137..140.........150.. .......160.........170... ......180.........190..
 
   237..240
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Query Sequence  LPAS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation 
          
                                                
Template Sequence  IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTN
Template Known Secondary structure 


TT
TT


TT
S






TT
TT



SS






TT
TT



SS
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   193......200.........210.........220.........230.........240.........250..
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation              
                       
                 
     
Template Sequence  NITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHC
Template Known Secondary structure 

S



TT
TT
S

SS

S



TT
TT
S

SS

S



TT
TT


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   253......260.........270.........280.........290.........300.........310..
 
   241........250.........260.........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LAGLRSLRLLVLHSNLLTSVPTGLVHLPL
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Template Sequence  IQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD. . LSQNPK
Template Known Secondary structure  TT


S



TT
TT


TT
TT





TT
TT


TT


S


..
TT
TT
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   313......320.........330.........340.........350.........360.... .....370
 
   270.........280.... .....290.........300.........310.......
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Query Sequence  ITRLDLRDNRLRDLP. AELLDAPFVRLQGNPLGEASPAPPSPPDISQVP
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Template Conservation 
  
 
  
 
  
    
  
  
 

 
 
  
  
  
  
     
Template Sequence  LVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFE
Template Known Secondary structure 


TT


S



TT
TT
S

SS


B
TTGGGSSGGGTS
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   371........380.........390.........400.........410.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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