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Job DescriptionQ9ERV7
Confidence99.84%DateWed Jul 10 14:21:35 BST 2013
Rank41Aligned Residues230
% Identity31%Templatec3rg1I_
PDB info PDB header:immune systemChain: I: PDB Molecule:cd180 molecule; PDBTitle: crystal structure of the rp105/md-1 complex
Resolution2.91 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.........70.........80.........90.........100...
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Query Sequence  NLDLRPGGCHRLQYLCSQQPPQLLQVEFLRLSTHEDPQLLDDTLAKVPWSLLRLRSLVLK
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Template Conservation   

 
   
  

  
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Template Sequence  TYNCENLGLREIPDTLP. . . . . . NTTEVLEFSFNFLPTIQNTTF. . . . SRLINLIFLDLT
Template Known Secondary structure 
TTS

SS

TTS
......TT



S


S
TTTT....SS
TT
S
T
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   36...40.........50.. .......60.........70... ......80.....
 
   104.....110.........120.........130.........140....... ..150.........160..
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Query Sequence  GGQSRGALGACLHGTLTTLPAGLSDLACLAHLDLSFNRLETLPT. CVPELHGLDALLLSH
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Template Conservation   
 
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Template Sequence  RCQINW. . . . . . . . . . . VHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQ
Template Known Secondary structure  TS


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TTTTTT
TT


TT




TTTT


S



TT
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   86...90. ........100.........110.........120.........130....
 
   163......170.....
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Query Sequence  NHLSELPEALGAL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                              
Template Sequence  TGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAIHYISRKDTN
Template Known Secondary structure  S



GGGS

TT
TT
S
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   135....140.........150.........160.........170.........180.........190....
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  SLEQATNLSLNFNGNDIKGIEPGAFISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGT
Template Known Secondary structure  TTTT
SS
TT




TTTT
STT
TT
S
TTT



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   195....200.........210.........220.........230.........240.........250....
 
   176...180.........190..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PALTFLTVTHNRLERLP
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Template Conservation                                                              
Template Sequence  FEDTDDQYLTSATFEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNGLP
Template Known Secondary structure 
TTS



B
GGGGGGGGGS
TT

BSS

GGGGTT
TT


TT


S


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   255....260.........270.........280.........290.........300.........310....
 
   193......200.........210.... .....220.........230...... ...240.........
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Query Sequence  LTLGSLSTLQRLDLSENLLDTI. PSEIGNLRSLSELNLASNRLQS. . LPASLAGLRSLRL
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Template Conservation          
  
 
  
 
          
  
  
 

 
 
   
       
  
  
Template Sequence  SGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQK
Template Known Secondary structure  S

STTTT


TT


SBGGGG
GGG
TT



S
SS

B

SSTTTT
TT

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   315....320.........330.........340.........350.........360.........370....
 
   250.........260.........270.........280..... ....290.........300......
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Query Sequence  LVLHSNLLTSVPTGLVHLPLITRLDLRDNRLRDLPA. . ELLDAPFVRLQGNPLGEASPA
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Template Conservation 
 

 
 
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Template Sequence  LDLSHSDI. . . . . . . . . . . . LQYLNLSYNEPLELLDVAFVLNLSHLNLQILILSHLDLS
Template Known Secondary structure 
TTS

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   375....380.. .......390.........400.........410.........420.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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