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Job DescriptionQ9ERV7
Confidence99.74%DateWed Jul 10 14:21:35 BST 2013
Rank73Aligned Residues227
% Identity25%Templatec3rfsA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:internalin b, repeat modules, variable lymphocyte receptor PDBTitle: design of a binding scaffold based on variable lymphocyte receptors of2 jawless vertebrates by module engineering
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   71........80.........90.........100.........110.........120.........130
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Query Sequence  FLRLSTHEDPQLLDDTLAKVPWSLLRLRSLVLKGGQSRGALGACLHGTLTTLPAGLSDLA
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Template Sequence  TITVS. TPIKQIFPDDA. . . . . . FAETIKANLKKKSVTD. . . . . . . . . . . . . AVTQNELN
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S
.S
S......T
S
TTS.............
T
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   2.... ...10....... ..20.........30... ......40.
 
   131........140.........150.........160.........170.........180.........
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Query Sequence  CLAHLDLSFNRLETLPTCVPELHGLDALLLSHNHLSELPEALGALPALTFLTVTHNRLE.
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Template Sequence  SIDQIIANNSDIKSVQG. IQYLPNVRYLALGGNKLHDI. SALKELTNLTYLILTGNQLQS
Template Known Secondary structure  T


TTS




TT.GGG
TT


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.GGGTT
TT


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   42.......50........ .60.........70........ .80.........90.........
 
   190.........200.........210....... ..220....
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Query Sequence  RLPLTLGSLSTLQRLDLSENLLDTIPSE. . . . . . . . . . . . . . . . . . . . . . . . . IGNLRSL
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Template Sequence  LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL
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TTTTTT
TT


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TTTTTT
TT



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TTTTTT
TT
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   100.........110.........120.........130.........140.........150.........
 
   225....230....... ..240.........250.........260... ......270.........280..
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Query Sequence  SELNLASNRLQSL. PASLAGLRSLRLLVLHSNLLTSVPTG. LVHLPLITRLDLRDNRLRD
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Template Sequence  TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC
Template Known Secondary structure 


SS





TTTTTT
TT



SS

S


TTTTTT
TT



SS
B

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   160.........170.........180.........190.........200.........210.........
 
   283.. ....290.........300.........310.........
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Query Sequence  LPA. . . . . . ELLDAPFVRLQGNPLGEASPAPPSPPDISQVPEM
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Template Sequence  TCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSGSGKPVRSI
Template Known Secondary structure 
TTTTTGGGBB
TTS
B
GGGSBBTTT

BGGG
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   220.........230.........240.........250.........260..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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