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Job DescriptionQ9ERV7
Confidence99.92%DateWed Jul 10 14:21:35 BST 2013
Rank23Aligned Residues232
% Identity31%Templatec2z81A_
PDB info PDB header:immune systemChain: A: PDB Molecule:toll-like receptor 2, variable lymphocyte receptor b; PDBTitle: crystal structure of the tlr1-tlr2 heterodimer induced by binding of a2 tri-acylated lipopeptide
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.........70.........80.........90.........100...
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Query Sequence  NLDLRPGGCHRLQYLCSQQPPQLLQVEFLRLSTHEDPQLLDDTLAKVPWSLLRLRSLVLK
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Template Conservation    
 
   
  

  
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Template Sequence  VCDGRSRSFTSIPSGL. . . . . . TAAMKSLDLSFNKITYIGHGDL. . . . RACANLQVLILK
Template Known Secondary structure 
TTS

SS

S

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TT



SS



SSTT....SS
TT


T
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   35....40.........50 .........60.........70.. .......80....
 
   104.....110.........120.........130.........140...... ...150.........160..
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Query Sequence  GGQSRGALGACLHGTLTTLPAGLSDLACLAHLDLSFNRLETLP. TCVPELHGLDALLLSH
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Template Conservation   
 
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Template Sequence  SSRINT. . . . . . . . . . . IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG
Template Known Secondary structure  TS


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TTTTTT
TT


TTS


S

TT
TT


TT
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   85....90 .........100.........110.........120.........130...
 
   163......170. ........180
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Query Sequence  NHLSELPEA. . LGALPALTF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation 
             
  
  
 
                   
  
              
Template Sequence  NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS
Template Known Secondary structure 


SSS
SS
S
TT
TT

SSS


TTTTTT

TT


TTT
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   134.....140.........150.........160.........170.........180.........190...
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                          
                   
Template Sequence  LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK
Template Known Secondary structure  TTT
S
SBSTTSTTTBSS
B
TT





SS







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   194.....200.........210.........220.........230.........240.........250...
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT
Template Known Secondary structure  S
GGGGG
TT

S


S




TTT




TT

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   254.....260.........270.........280.........290.........300.........310...
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                          
  
                    
  
        
Template Sequence  IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV
Template Known Secondary structure  S
B
S
GGGS



STT

SS






TT



SS


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   314.....320.........330.........340.........350.........360.........370...
 
   181........190......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LTVTHNRLERLPLTLG
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Template Conservation                 
  
                      
                  
Template Sequence  EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ
Template Known Secondary structure  T
TTSSTT


TTS



GGG
TT


TT






S


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   374.....380.........390.........400.........410.........420.........430...
 
   197..200.........210.........220.........230.........240.........250......
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Query Sequence  SLSTLQRLDLSENLLDTIPSEIGNLRSLSELNLASNRLQSLPASLAGLRSLRLLVLHSNL
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Template Conservation      
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Template Sequence  WPEKMRFLNLSSTGIRVV. . KTCIPQTLEVLDVSNNNLDSFSL. . . FLPRLQELYISRNK
Template Known Secondary structure 

TT


TTS

S

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TTS
TT
S

SS

S



...

TT



SS
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   434.....440.........450. ........460.........470.... .....480........
 
   257..260.........270.........280..... ....290.........300..
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Query Sequence  LTSVPTGLVHLPLITRLDLRDNRLRDLPA. . . . ELLDAPFVRLQGNPLGE
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Template Conservation 
  
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Template Sequence  LKTLPD. ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC
Template Known Secondary structure 
SS


.GGG
TT



SS





TTGGGG
TT



SS
B

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   489490.... .....500.........510.........520.........530.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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