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Job DescriptionQ9ERV7
Confidence99.84%DateWed Jul 10 14:21:35 BST 2013
Rank45Aligned Residues162
% Identity35%Templatec1ltxA_
PDB info PDB header:transferase/protein bindingChain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   122.......130.........140.........150.........160.........170.....
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Query Sequence  LPAGLSDLACLAHLDLSFNRLETLPTCVPELHGLDALLLSHNHLSELPEALGAL. . . . . .
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Template Sequence  FRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQEL
Template Known Secondary structure  TTT

TT
S

TTTTTSS




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   318.320.........330.........340.........350.........360.........370.......
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLK
Template Known Secondary structure  STT

TTTT
GGG
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   378.380.........390.........400.........410.........420.........430.......
 
   176...180.........190.........200.........210.........220.........230..
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Query Sequence  . . . PALTFLTVTHNRLERLPLTLGSLSTLQRLDLSENLLDTIPSEIGNLRSLSELNLASN
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Template Sequence  MEYADVRVLHLAHKDLTVLCH. LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN
Template Known Secondary structure  T
S

SS


S


.GGG
TT



SS


B

GGGGG
TT



SS
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   438.440.........450........ .460.........470.........480.........490......
 
   233......240.........250.........260. ........270.........280.....
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Query Sequence  RLQSLPASLAGLRSLRLLVLHSNLLTSVP. . TGLVHLPLITRLDLRDNRLRDLPA
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Template Sequence  ALENVD. GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG
Template Known Secondary structure 


B
G.GGSS
TT



SS


SGGGGGGGGG
TT


TTSGGGGSTT
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   497..500.. .......510.........520.........530.........540.........550
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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