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Job DescriptionQ9ERV7
Confidence99.83%DateWed Jul 10 14:21:35 BST 2013
Rank46Aligned Residues210
% Identity25%Templatec4fcgA_
PDB info PDB header:structural genomics, unknown functionChain: A: PDB Molecule:uncharacterized protein; PDBTitle: structure of the leucine-rich repeat domain of the type iii effector2 xcv3220 (xopl)
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   68.70.........80.........90.........100.........110.........120.......
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Query Sequence  QVEFLRLSTHEDPQLLDDTLAKVPWSLLRLRSLVLKGGQSRGALGACLHGTLTTLPAGLS
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Template Sequence  NNPQIETRTGRALKATADLLEDA. . TQPGRVALELRSVP. . . . . . . . . . . . LPQFPDQAF
Template Known Secondary structure  T
TTS

S..TSTT

SS
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SS

S
GG
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   178.180.........190.........200 .........210.... .....220...
 
   128.130.........140.........150.........160.........170.........180.......
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Query Sequence  DLACLAHLDLSFNRLETLPTCVPELHGLDALLLSHNHLSELPEALGALPALTFLTVTHNR
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Template Sequence  RLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP
Template Known Secondary structure  GGTT
SSS





S
GGGGTT
SS






GGGGG
TT

T
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   224.....230.........240.........250.........260.........270.........280...
 
   188.190.........200.........210.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LERLPLTLGSLSTLQRLDLSENLLDTIP
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Template Sequence  ELTELPEPLASTDSGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG
Template Known Secondary structure  T




S
S



STT







GGGGG
TT

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   284.....290.........300.........310.........320.........330.........340...
 
   216...220.........230..... ....240.........250........ .260.........270...
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Query Sequence  SEIGNLRSLSELNLASNRLQ. SLPASLAGLRSLRLLVLHSNLLT. SVPTGLVHLPLITRL
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Template Sequence  PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL
Template Known Secondary structure  GGGGG
TT


TT
TT

B



TT






TT
TT

B

TTGGG
TT

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   345....350.........360.........370.........380.........390.........400....
 
   274..... 280.........290.
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Query Sequence  DLRDNR. LRDLPAELLDAP
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Template Sequence  DLRGCVNLSRLPSLIAQLP
Template Known Secondary structure 
TT
TT




GGGGGS
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   405....410.........420...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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