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Job DescriptionQ9ERV7
Confidence99.82%DateWed Jul 10 14:21:35 BST 2013
Rank48Aligned Residues159
% Identity28%Templatec4b8cD_
PDB info PDB header:hydrolase/cell cycleChain: D: PDB Molecule:glucose-repressible alcohol dehydrogenase transcriptional PDBTitle: nuclease module of the yeast ccr4-not complex
Resolution3.41 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   123......130.........140.........150.........160.........170.........180..
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Query Sequence  PAGLSDLACLAHLDLSFNRLETLPTCVPELHGLDALLLSHNHLSELPEALGALPALTFLT
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Template Sequence  SKTAKDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLD
Template Known Secondary structure  TT








B
TTS

S


GGGGG

S
S

B
TTS

S


GGGGGGTT

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   257..260.........270.........280.........290.........300.........310......
 
   183......190.........200.........210.........220.........230.........240
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Query Sequence  VTHNRLERLPLTLGSLSTLQRLDLSENLLDTIPSEIGNLRSLSELNLASNRLQSLPAS. .
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Template Sequence  LSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL
Template Known Secondary structure 
TTS

SS

SSGGGGTT
S

SS





SSTTS
TT



TTS


S
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   387..390.........400.........410.........420.........430.........440......
 
   241..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LAG
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Template Sequence  TEKSVTGLIFYLRDNRPEIPLPHETLCQHYATPKMYRYTPSWALSWDYRRNKLKEQILSY
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GGG

TTT

SS
SS
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   447..450.........460.........470.........480.........490.........500......
 
   244.....250......... 260.........270.........280.
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Query Sequence  LRSLRLLVLHSNLLTS. VPTGLVHLPLITRLDLRDNRLR
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Template Sequence  DSDLLCLQVESKTFEEYWVPTGIFVDGCCIFFLPFTNFT
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SS


TTT











SB

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   548.550.........560.........570.........580......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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