Job Description Q62077 Confidence 99.75% Date Tue Jul 30 13:20:18 BST 2013 Rank 28 Aligned Residues 172 % Identity 17% Template c3or8A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: a tandem sh2 domain in transcription elongation factor spt6 Resolution 1.60 Å

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		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.		600	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		S	S	E	K	W	F	H	G	K	L	G	A	G	R	D	G	R	H	I	A	E	R	L	L	T	E	Y	C	I	E	T	G	A	P	D	G	S	F	L	V	R	E	S	E	T	F	V	G	D	Y	T	L	S	F	.	W	R	N	G	K
Query Conservation																																																								.
Alig confidence									.				.	.	.	.	.												.	.	.	.	.	.																						.
Template Conservation									.				.	.	.	.	.												.	.	.	.	.	.
Template Sequence		I	N	H	P	Y	Y	F	.	P	F	N	.	.	.	.	.	G	K	Q	A	E	D	Y	L	R	S	K	.	.	.	.	.	.	E	R	G	D	F	V	I	R	Q	S	S	R	G	D	D	H	L	A	I	T	W	K	L	D	K	D	L
Template Known Secondary structure					T	T			.				.	.	.	.	.									T	T	S	.	.	.	.	.	.		T	T								S	S		T	T										T	T
Template Predicted Secondary structure									.				.	.	.	.	.												.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10		.	.	.						.	.	.	.	.	.	20	.	.	.	.							.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.
		605	.	.	.	.	610	.	.	.	.	.	.	.	.				.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		V	Q	H	C	R	I	H	S	R	Q	D	A	G	T	.	.	.	P	K	F	F	L	T	D	N	L	V	F	D	S	L	Y	D	L	I	T	H	Y	Q	Q	V	P	L	R	C	N	E	F	E	M	R	L	S	E	P	V	P	Q	T	N
Query Conservation																.	.	.
Alig confidence																.	.	.																								.											.	.	.	.	.	.	.	.	.
Template Conservation																																										.											.	.	.	.	.	.	.	.	.
Template Sequence		F	Q	H	V	D	I	Q	E	L	E	K	E	N	P	L	A	L	G	K	V	L	V	V	E	G	Q	R	Y	H	D	L	D	Q	I	I	V	E	Y	L	Q	.	N	K	I	R	L	L	N	E	L	T	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S		S	S	T	T	S			S					T	T				S	S								T			.											.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.											.	.	.	.	.	.	.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.
		662	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.		.	.	.	.	.	690	.	.	.	.					.	.	.	.	.	700	.	.	.	.	.	.	.	.	.			710	.	.	.	.
Predicted Secondary structure																									.											.	.	.	.																.	.
Query SS confidence																									.											.	.	.	.																.	.
Query Sequence		A	H	E	S	K	E	W	Y	H	A	S	L	T	R	A	Q	A	E	H	M	L	M	R	.	V	P	R	D	G	A	F	L	V	R	.	.	.	.	K	R	N	E	P	N	S	Y	A	I	S	F	R	A	E	.	.	G	K	I	K	H
Query Conservation																									.											.	.	.	.																.	.
Alig confidence		.	.	.									.												.											.	.	.	.																.	.
Template Conservation		.	.	.									.
Template Sequence		.	.	.	S	N	E	K	F	K	A	G	.	T	K	K	E	V	V	K	F	I	E	D	Y	S	K	V	N	P	K	K	S	V	Y	Y	F	S	L	N	Y	E	N	P	G	W	F	Y	L	I	F	K	L	N	A	E	S	K	L	Y	I
Template Known Secondary structure		.	.	.	T	S	T	T				S	.																	T	T										T	T	S	T	T								S	S	T	T	S
Template Predicted Secondary structure		.	.	.									.
Template SS confidence
					102	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		715	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	R	V	Q	Q	E	G	Q	T	V	M	L	G	N	S	E	F	D	S	L	V	D	L	I	S	Y	Y	E	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	N	V	K	L	T	H	T	G	F	F	L	V	N	Y	N	Y	P	T	V	I	Q	L	C	N	G	F	K	T
Template Known Secondary structure								S	S	S				T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D