Job Description Q62077 Confidence 99.29% Date Tue Jul 30 13:20:18 BST 2013 Rank 66 Aligned Residues 141 % Identity 18% Template c3nsjA_ PDB info PDB header:immune system Chain: A: PDB Molecule:perforin-1; PDBTitle: the x-ray crystal structure of lymphocyte perforin Resolution 2.75 Å

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		1056	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	G	H	C	G	Y	V	L	Q	P	S	T	M	R	D	E	A	F	D	P	F	D	K	S	S	L	R	G	L	E	P	C	V	I	C	I	E	V	L	G	A	R	H	L	P	K	N	G	R	G	I	V	C	P	F	V	E	I	E
Query Conservation
Alig confidence																												.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.
Template Sequence		S	H	D	S	C	Q	C	E	C	Q	D	S	K	V	T	N	Q	D	C	C	P	R	Q	R	G	L	.	.	.	.	.	.	A	H	L	V	V	S	N	F	R	A	E	H	L	W	G	D	Y	T	T	A	T	D	A	Y	L	K	V	F
Template Known Secondary structure		S	S		T	T					S		T	T	T	B		G	G	G		B	S	S	T	T		.	.	.	.	.	.												S				S	S		S
Template Predicted Secondary structure																												.	.	.	.	.	.
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.							.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
		1116	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.		.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		V	A	G	A	E	Y	D	S	T	K	Q	K	T	E	F	V	V	D	N	G	L	N	P	V	W	P	A	K	P	F	H	F	Q	I	S	N	P	E	F	A	.	F	L	R	F	V	V	Y	E	E	D	M	F	S	D	Q	N	F	L	A
Query Conservation																																										.
Alig confidence			.	.	.	.	.													.								.														.
Template Conservation			.	.	.	.	.													.								.
Template Sequence		F	.	.	.	.	.	G	G	Q	E	F	R	T	G	V	V	W	N	.	N	N	N	P	R	W	T	.	D	K	M	D	F	E	N	V	L	L	S	T	G	G	P	L	R	V	Q	V	W	D	A	D	Y	G	W	D	D	D	L	L	G
Template Known Secondary structure			.	.	.	.	.	T	T								B		S	.		S	S		B			.										T	T	T													S	S	S
Template Predicted Secondary structure			.	.	.	.	.													.								.
Template SS confidence
		442						.	.	.	.	.	.	.	450	.	.	.	.		.	.	.	.	.	460	.		.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
		1175	.	.	.	.	1180	.									.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.
Query Sequence		Q	A	T	F	P	V	K	.	.	.	.	.	.	.	.	G	L	K	T	G	Y	R	A	V	P	L	K	N	N	Y	S	E	D	L	E	L	A	S	L	L	I	K	I
Query Conservation									.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	C	D	R	S	P	H	S	G	F	H	E	V	T	C	E	L	N	H	G	R	V	K	F	S	Y	H	A	K	C	L	P	H	L	T	G	G	T	C	L	E	Y	A
Template Known Secondary structure									S										S	S	S												T	T			S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D