Job Description Q62077 Confidence 99.69% Date Tue Jul 30 13:20:18 BST 2013 Rank 31 Aligned Residues 162 % Identity 18% Template c2xp1A_ PDB info PDB header:transcription Chain: A: PDB Molecule:spt6; PDBTitle: structure of the tandem sh2 domains from antonospora locustae2 transcription elongation factor spt6 Resolution 2.20 Å

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		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.		600	.	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		S	S	E	K	W	F	H	G	K	L	G	A	G	R	D	G	R	H	I	A	E	R	L	L	T	E	Y	C	I	E	T	G	A	P	D	G	S	F	L	V	R	E	S	E	T	F	V	G	D	Y	T	L	S	F	.	W	R	N	G	K
Query Conservation																																																								.
Alig confidence									.				.	.	.	.	.													.	.	.	.	.	.	.									.											.
Template Conservation									.				.	.	.	.	.													.	.	.	.	.	.	.									.
Template Sequence		Y	K	H	P	L	F	K	.	N	F	N	.	.	.	.	.	V	T	E	S	E	N	Y	L	R	S	S	T	.	.	.	.	.	.	.	D	D	F	L	I	R	K	G	.	S	R	H	G	Y	C	V	L	V	I	K	F	A	S	D	V
Template Known Secondary structure		G	G	S	T	T			.				.	.	.	.	.											S	S	.	.	.	.	.	.	.									.	S	S	T	T										T	T
Template Predicted Secondary structure									.				.	.	.	.	.													.	.	.	.	.	.	.									.
Template SS confidence
		790	.	.	.	.	.	.		.	.	.						800	.	.	.	.	.	.	.	.	.	810	.								.	.	.	.	.	.	.	.		820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.
		605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	H	C	R	I	H	S	R	Q	D	A	G	T	P	K	F	F	L	T	D	N	L	V	F	D	S	L	Y	D	L	I	T	H	Y	Q	Q	V	P	L	R	C	N	E	F	E	M	R	L	S	E	P	V	P	Q	T	N	A	H	E
Query Conservation
Alig confidence														.	.	.	.	.																									.	.										.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.																									.	.										.	.	.	.	.	.	.	.
Template Sequence		F	V	H	M	K	I	E	E	H	S	E	H	.	.	.	.	.	Y	T	C	S	N	K	H	F	E	D	I	D	E	V	I	S	V	Y	V	R	P	I	L	R	.	.	N	L	K	S	I	K	A	H	A	.	.	.	.	.	.	.	.
Template Known Secondary structure											S	S		.	.	.	.	.				T	T				S	S								T							.	.								S	T	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.																									.	.										.	.	.	.	.	.	.	.
Template SS confidence
		836	.	.	.	840	.	.	.	.	.	.	.						.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.			.	.	.	.	.	.	.	.	880
		665	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.		.	.	.	.	690	.	.	.	.	.	.		.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.
Predicted Secondary structure																							.												.
Query SS confidence																							.												.
Query Sequence		S	K	E	W	Y	H	A	S	L	T	R	A	Q	A	E	H	M	L	M	R	V	.	P	R	D	G	A	F	L	V	R	K	R	.	N	E	P	N	S	Y	A	I	S	F	R	A	E	G	K	I	K	H	C	R	V	Q	Q	E	G	Q
Query Conservation																							.												.
Alig confidence		.	.	.								.	.										.												.																										.
Template Conservation		.	.	.								.	.																																																.
Template Sequence		.	.	.	K	Y	F	N	S	P	E	.	.	D	A	E	K	L	L	S	S	F	D	G	S	K	V	V	Y	A	F	Y	F	S	R	K	Y	P	G	K	L	T	F	A	Y	N	N	G	S	I	L	E	E	Y	I	G	V	S	D	M	.
Template Known Secondary structure		.	.	.	T	B		S		T	T	.	.	T	S						T			S	S	S									S	S	S	T	T								S	S	S									S	S	S	.
Template Predicted Secondary structure		.	.	.								.	.																																																.
Template SS confidence
					881	.	.	.	.	.	.			.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.
		723	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	M	L	G	N	S	E	F	D	S	L	V	D	L	I	S	Y	Y	E	K
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	L	T	Y	N	N	S	T	F	K	D	I	D	S	F	V	A	Y	R	K	R
Template Known Secondary structure		.				T	T				S	S
Template Predicted Secondary structure		.
Template SS confidence
			935	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D